1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' | 12 5' 3' | 13 5' 3' |
...cgagctgggtcctcattcccgaaccctccaatcccttccccatggtgcactggttctgcggccgaatcgcttaatcgcttattggtctctgtggaatcagCGGCGATGCGGTGGAAGCTTAACTCCTCCGTCTACAAGCGCGTGCCGTCCAGGGAAACCGCCATGGAACCCGACGTCGAGACGCCAAGTTCGTGCCGCAT
species | Zea mays |
transcript | GRMZM2G412899_T04 |
intron # | 1 |
splice site | 3' |
intron type | U2 |
EST: GACACGTCGCCTCCCCCGCGCGATCTGATGCAGGCGCACGCGGTGGCCAA CGGCGATGCGGTGGAAGCTTAEST: gi|32802215|gb|CD954451.1|CD954451
genomic: GACACGTCGCCTCCCCCGCGCGATCTGATGCAGGCGCACGCGGTGGCCAGgtaaacaagc ... gtggaatcagCGGCGATGCGGTGGAAGCTTA
EST: GACACGTCGCCTCCCCCGCGCGATCTGATGCAGGCGCACGCGGTGGCCAG CGGCGATGCGGTGGAAGCTTAEST: gi|211187601|gb|FL070471.1|FL070471
genomic: GACACGTCGCCTCCCCCGCGCGATCTGATGCAGGCGCACGCGGTGGCCAGgtaaacaagc ... gtggaatcagCGGCGATGCGGTGGAAGCTTA
EST: GACACGTCGCCTCCCCCGCGCGATCTGATGCAGGCGCACGCGGTGGCCAG CGGCGATGCGGTGGAAGCTTAACTCCTCCGTCTACAAGCGCGTGCCGTCCA
genomic: GACACGTCGCCTCCCCCGCGCGATCTGATGCAGGCGCACGCGGTGGCCAGgtaaacaagc ... gtggaatcagCGGCGATGCGGTGGAAGCTTAACTCCTCCGTCTACAAGCGCGTGCCGTCCA
tgcactggttctgcggccgaatcgcttaatcgcttattggtctctgtggaatcagCGGCGATGCGGTGGAAGCTTAACTCCTCCGTCTACAAGCGCGTGCCGTCCAGGGAAACCGCCATGGAACCCGACGTCGAGACGCCAAGTTCGTGCCGCAT
gcttaat putative branch site (score: 4)
tctctgt putative PPT
ttaat TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| cgagctgggtcctcattcccgaaccctccaatcccttccccatggtgcactggttctgcggccgaatcgcttaatcgcttattggtctctgtggaatcagCGGCGATGCGGTGGAAGCTTAACTCCTCCGTCTACAAGCGCGTGCCGTCCAGGGAAACCGCCATGGAACCCGACGTCGAGACGCCAAGTTCGTGCCGCAT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CATGGA