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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

...tgcctgctttgatatcgtgctgctgggctaacgaggatggagctttggcggctccgtttgttgttcagctggatgacgtggttattgcattgacgtgcagGTAAGAAGGTAAGGAAGAGGGCGAAATGGTGAAGCACAACAACGTTATCCCCAACGGGCACTTCAAGAAGCACTGGCAGAACTATGTCAAGACATGGTTC

Basic information

species Zea mays
transcript GRMZM2G409407_T01
intron # 1
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GRMZM2G409407_T01 (Zea mays), 3'ss of exon 1
lower sequence: GLYMA09G34760.4 (Glycine max), 3'ss of exon 1
tgcctgctttgatatc-gtgctgctgggctaacgaggatggagctttggcggctccgtttgttgttcagctggatgacgtggttattgcattgacgtgcagGTAAGAAGGTAAGGAAGAGGGCGAAATGGTGAAGCACAACAACGTTATCCCCAACGGGCACTTCAAGAAGCACTGGCAGAACTATGTCAAGACATGGTTC-----------------
    |  || | |||| |   |  |   ||| |  |     |    |     ||   |   |  |  | |  | || |||||||    | || | ||| |       |||||||  | |       ||||| ||||| ||||| |||||||| ||||| ||||||   |||||||||||||||||||| ||||| ||||||                 
----ttgttagttatctgctattttacactatcttgtgctta-tcctattaccttattacataatctaacctgttgtcgtggttg--actttaatgtgta-------aggtaagCCAAAACC----ATGGTTAAGCATAACAATGTTATCCCAAACGGACACTTCCGTAAGCACTGGCAGAACTATGTGAAGACTTGGTTCAATCAGCCAGCACGGAA

upper sequence: GRMZM2G409407_T01 (Zea mays), 3'ss of exon 1
lower sequence: GLYMA04G14640.1 (Glycine max), 3'ss of exon 1
tgcctgctttgatatcgtgctgctgggctaacgaggatggagctttggcg-gctccgtttgttgttcagctggatgacgtgg-ttattgcattgacgtgcagGTAAGAAGGTAAGGAAGAGGGCGAAATGGTGAAGCACAACAACGTTATCCCCAACGGGCACTTCAAGAAGCACTGGCAGAACTATGTCAAGACATGGTTC-----------------
                    || | |     | | | |   |||||   | |||       ||       |  || |  |   || |||   ||     |  || |   |  | | |||     |  ||||| ||||| ||||| ||||||||||| || ||||||   |||||||||||||||||||| ||||| ||||||                 
-------------------gtgattgatctgctatggttacgctttcttgtgcttatccaattaccttattacataatctaacttgttgtcgtggatgacctgttatgtgtaaggtaagCCAAAGCCATGGTTAAGCATAACAATGTTATCCCCAATGGACACTTCCGTAAGCACTGGCAGAACTATGTGAAGACCTGGTTCAATCAGCCAGCACGGAA

upper sequence: GRMZM2G409407_T01 (Zea mays), 3'ss of exon 1
lower sequence: GLYMA16G08090.1 (Glycine max), 3'ss of exon 1
tgcctgctttgatatcgtgctgctgggctaacgaggatggagctttggcggctccgtttgttgttcagctggatgacgtggttattgcattgacgtgcagGTAAGAAGGTAAGGAAGAGGGCGAAATGGTGAAGCACAACAACGTTATCCCCAACGGGCACTTCAAGAAGCACTGGCAGAACTATGTCAAGACATGGTTC------------------
         |  |||  |  |   ||  |   |  |||    ||||     |    |    |||| | |  | ||   |  || ||   ||   ||     |  | |||||||          | ||||| ||||| ||||||||||||||||| |||||||||| ||| |||||||| |||||||| ||||| |||||                   
-------catagtattttaattggggtttgcagctgatttgtcttttata-catgatcatatgttgaccctgttgttttttttgttcttttattgttgtcatttgtagGTAAG----------ATATGGTTAAGCATAACAACGTTATCCCCAATGGGCACTTCAGGAAACACTGGCAAAACTATGTGAAGACTTGGTTTAATCAACCAGCACGGAAG

upper sequence: GRMZM2G409407_T01 (Zea mays), 3'ss of exon 1
lower sequence: GLYMA09G34760.3 (Glycine max), 3'ss of exon 2
--tgcctgctttgatatc-gtgctgctgggctaacgaggatggagctttggcggctccgtttgttgttcagctggatgacgtggttattgcattgacgtgcagGTAAGAAGGTAAGGAAGAGGGCGAAATGGTGAAGCACAACAACGTTATCCCCAACGGGCACTTCAAGAAGCACTGGCAGAACTATGTCAAGACATGGTTC------------
  ||  || || | |||| |   |  |   ||| |  |     |    |     ||   |   |  |  | |  | || |||||||    | || | ||| |       |||||||  | |       ||||| ||||| ||||| |||||||| ||||| ||||||   |||||||||||||||||||| ||||| ||||||            
gttgattg-ttagttatctgctattttacactatcttgtgctta-tcctattaccttattacataatctaacctgttgtcgtggttg--actttaatgtgta-------agGTAAGCCAAAACC----ATGGTTAAGCATAACAATGTTATCCCAAACGGACACTTCCGTAAGCACTGGCAGAACTATGTGAAGACTTGGTTCAATCAGCCAGCA

upper sequence: GRMZM2G409407_T01 (Zea mays), 3'ss of exon 1
lower sequence: GLYMA16G17370.1 (Glycine max), 3'ss of exon 1
tgcctgctttgatatcgtgctgctgggctaacgaggatggagctttggcggctccgtttgttgttcagctggatgacgtggttattgcattgacgtgcagGTAAGAAGGTAAGGAAGAGG-GCGAAATGGTGAAGCACAACAACGTTATCCCCAACGGGCACTTCAAGAAGCACTGGCAGAACTATGTCAAGACATGGTTC------------------
           |||   || |  | ||     |  | ||    |||| |   |   | || | ||  |  |    ||   ||| ||  |||   || |   ||     ||||     |||   | |||||| ||||| || || ||||||||||| |||||||||  ||| |||||||| |||||||| ||||| |||||                   
----------tatagtatgttaattggggtttgtagttga---tttgtcttttttatatgatcttatgtcg----accctgttgttttatt--tgttcttttattgctgtaatttgtagGTAAGCAATGGTTAAGCATAATAATGTTATCCCCAATGGGCACTTCCGGAAACACTGGCAAAACTATGTGAAGACTTGGTTTAATCAACCAGCCCGAAAG

upper sequence: GRMZM2G409407_T01 (Zea mays), 3'ss of exon 1
lower sequence: GLYMA04G14640.2 (Glycine max), 3'ss of exon 1
tgcctgctttgatatcgtgctgctgggctaacgaggatggagctttggcggctccgtttgttgttcagctggatgacgtggttattgcattgacgtgcagGTAAGAAGGTAAGGAAGAGGGCGAAATGGTGAAGCACAACAACGTTATCCCCAACGGGCACTTCAAGAAGCACTGGCAGAACTATGTCAAGACATGGTTC------------
    || ||||  || |  |||||  | | |||           ||  |   |    || ||    |     |    || ||  | |   |||| ||        ||||||||  | ||      ||||| ||||| ||||| ||||||||||| || ||||||   |||||||||||||||||||| ||||| ||||||            
----tg-tttgtgattgatctgctatggttacgctttcttgtgcttatccaattaccttattacataatctaact-tgttgtcgtgga--tgacctgttatgtgtaagGTAAGCCAAAGCC----ATGGTTAAGCATAACAATGTTATCCCCAATGGACACTTCCGTAAGCACTGGCAGAACTATGTGAAGACCTGGTTCAATCAGCCAGCA

upper sequence: GRMZM2G409407_T01 (Zea mays), 3'ss of exon 1
lower sequence: AT3G49010.1 (Arabidopsis thaliana), 3'ss of exon 1
tgcctgctttgatatcgtgctgctgggctaacgaggatggagctttggcggctccgtttgttgttca--gctggatgacgtggttattgcattgacgtgcagGTAAGAAGGTAAGGAAG---AGGGCGAAATGGTGAAGCACAACAACGTTATCCCCAACGGGCACTTCAAGAAGCACTGGCAGAACTATGTCAAGACATGGTTC--------------
              |  || |  ||   |   |||| |  | | || |    ||| |  | |||| |  | |  || |  || |  ||  | ||  ||     | |     |  || ||     |  |||    ||||||||||||| ||||||||||| || |||||||| |||||||||||||| ||||||||||||||||||              
--------------ttttgtttttgaagtt-tgaggttttatcatttg-atttccttgagctgtttaaagtttcatcatttgat--ttaaagtg-tgtctgattgatgttttttggcagCTTGAGTTGAAGAAATGAAGCACAACAATGTTATCCCCAATGGTCACTTCAAAAAGCACTGGCAGAATTATGTCAAGACATGGTTCAACCAGCCTGCCAG

upper sequence: GRMZM2G409407_T01 (Zea mays), 3'ss of exon 1
lower sequence: Vv14s0006g00820.t01 (Vitis vinifera), 3'ss of exon 1
tgcctgctttgatatcgtgctgctgggctaacgaggatggagctttggcggctccgtttgttgttcagctggatgacgtggttattgcattgacgtgcagGTAAGAAGGTAAGGAAGAGG-GCGAAATGGTGAAGCACAACAACGTTATCCCCAACGGGCACTTCAAGAAGCACTGGCAGAACTATGTCAAGACATGGTTC------------------
                 |  |  |    | |      ||    | |   |  |   |||||     ||||  ||  |    |  |||   ||   |   | |      |  |   | |||   |  ||||| ||||| ||||| ||| | || || |||||||||||||| || |||||||| |||||||| || |||||                   
-----------------tcttttttcattcagatttttgtgtttcttttgagttattttgtgacggagctaaatcgcaaaat--ttgtgatggtattttgtttgtgctgccatttacagGTAAGCCATGGTTAAGCATAACAATGTTGTGCCTAATGGGCACTTCAAGAAACATTGGCAGAATTATGTCAAAACTTGGTTTAACCAACCTGCTCGCAAA

upper sequence: GRMZM2G409407_T01 (Zea mays), 3'ss of exon 1
lower sequence: PP1S21_106V6.1 (Physcomitrella patens), 3'ss of exon 1
tgcctgctttgatatcgtgctgctgggctaacgaggatggagctttggcggctccgttt--gttgttcagctggatgacgtggttattgcattgacgtgcagGTAAGAAGGTAAGGAAGAGGGCGAAATGGTGAAGCACAACAACGTTATCCCCAACGGGCACTTCAAGAAGCACTGGCAGAACTATGTCAAGACATGGTTC---------------
     ||  |     | || ||||    ||    | |||| || |||    |   ||||  ||   |  |    |  |||| |   ||    ||  ||    |   | ||||   |       |   ||||||||||| |||||||| || ||||| || |||||||||||| |||||||||||||||| | ||| ||||||               
-----gccctc-cgccttgatgcttcagtagtttgcatggtgcattg-tatcagggtttaggtctgtgggaaaaaaaacgtagggtttctgatggtgtt---gctcgcagGTCTAG-------CACCATGGTGAAGCATAACAACGTCATTCCCAATGGTCACTTCAAGAAGGACTGGCAGAACTATGTGAGGACTTGGTTCAACCAGCCCGCACGC

upper sequence: GRMZM2G409407_T01 (Zea mays), 3'ss of exon 1
lower sequence: PP1S47_277V6.1 (Physcomitrella patens), 3'ss of exon 1
----------------------------------------------------------------tgcctgctttgatatcgtgctgctgg-gctaacgaggatggagcttt-----------ggcggctccgtttgttgttcagctggatg-acgtggttattg-----cattgacgtgcagGTAAGAAGGTAAGGAAGAGGGCGAAATGGTGAAGCACAACAACGTTATCCCCAACGGGCACTTCAAGAAGCACTGGCAGAACTATGTCAAGACATGGTTC---------------
                                                                ||  |||||    |      ||  || | |     |     || | |           ||  |      | ||| | | |  || ||  | ||||| |||      | | |  |   ||| |  |         || |     ||||||||||| ||||| || ||||| ||||| || ||||||||| ||||||| |||||||| | ||| ||||||               
gtgtgcctcgccgctcatcttaacattgtacagcttcataggcttccagttgggaaggagtttgtggttgcttgtgcaattccttgtgggagatggtctgtccaaagttcttccccctaaacgggaggcgatctagttctcctgaggggtgtgcatggttgttgatgtatactaagtttttggtcatcaccactcagGGACGAAACCATGGTGAAGCATAACAATGTCATCCCTAACGGACATTTCAAGAAGGACTGGCAAAACTATGTGAGGACGTGGTTCAACCAGCCCGCTCGC

upper sequence: GRMZM2G409407_T01 (Zea mays), 3'ss of exon 1
lower sequence: PP1S459_9V6.2 (Physcomitrella patens), 3'ss of exon 1
-------------------------------------------------------tgcctgctttgatatcg--tgctgctgggctaacgaggatggagctttgg--cggctccgtttgttgttcagctggatgacgtggttattgc--attgacgtgcagGTAAGAAGGTAAGGAAGAGGGCGAA-ATGGTGAAGCACAACAACGTTATCCCCAACGGGCACTTCAAGAAGCACTGGCAGAACTATGTCAAGACATGGTTC---------------
                                                         | |||| | | |     | ||    ||  ||    | |||||||  |   |||  | |   |    | || |   |   ||  ||  |||  | | |  |||  ||    |   | | | ||     |  ||||||||||| ||||| || ||||||||||| |||||||||||| |||||||||||||||| | ||| ||||||               
gtatgctggcttgctttcctttgcattgcacagctgcgtaaggttgtggctggggatcgtgctgtaagactcatttctttcaggagaattcagctggagctcagcttcggagctgaaggcgacttaggtttgtttagtttttcatgcccactaaactgcttgtcgtgaaaaacgtagGACCAGAATCATGGTGAAGCATAACAATGTCATCCCCAACGGTCACTTCAAGAAGGACTGGCAGAACTATGTGAGGACCTGGTTCAACCAGCCCGCACGC

upper sequence: GRMZM2G409407_T01 (Zea mays), 3'ss of exon 1
lower sequence: PP1S459_9V6.1 (Physcomitrella patens), 3'ss of exon 1
-------------------------------------------------------tgcctgctttgatatcg--tgctgctgggctaacgaggatggagctttgg--cggctccgtttgttgttcagctggatgacgtggttattgc--attgacgtgcagGTAAGAAGGTAAGGAAGAGGGCGAA-ATGGTGAAGCACAACAACGTTATCCCCAACGGGCACTTCAAGAAGCACTGGCAGAACTATGTCAAGACATGGTTC---------------------
                                                         | |||| | | |     | ||    ||  ||    | |||||||  |   |||  | |   |    | || |   |   ||  ||  |||  | | |  |||  ||    |   | | | ||     |  ||||||||||| ||||| || ||||||||||| |||||||||||| |||||||||||||||| | ||| ||||||                     
gtatgctggcttgctttcctttgcattgcacagctgcgtaaggttgtggctggggatcgtgctgtaagactcatttctttcaggagaattcagctggagctcagcttcggagctgaaggcgacttaggtttgtttagtttttcatgcccactaaactgcttgtcgtgaaaaacgtaggaccagAATCATGGTGAAGCATAACAATGTCATCCCCAACGGTCACTTCAAGAAGGACTGGCAGAACTATGTGAGGACCTGGTTCAACCAGCCCGCACGCAAGAAG

upper sequence: GRMZM2G409407_T01 (Zea mays), 3'ss of exon 1
lower sequence: PP1S58_38V6.1 (Physcomitrella patens), 3'ss of exon 1
tgcctgctttgatatcgtgctgctgggctaacgag--gatggagctttggcggctccgtttgttgttcagctggatgacgtggttattgcat--tgacgtgcagGTAAGAAGGTAAGGAAGAG-GGCGAAATGGTGAAGCACAACAACGTTATCCCCAACGGGCACTTCAAGAAGCACTGGCAGAACTATGTCAAGACATGGTTC---------------
                 |  || |||  |  || |  ||||  | | | |   | |  ||  |  |  ||  || | | | | ||||  |||   || ||    ||  |    |    | |   |||   ||||||||||| || || ||||||||||| || |||||||||||| |||||||||||||||| | ||| ||||||               
-----------------ttgtgatggagtggcgtgccgatgttgttcttgtctcgc-attcctcatatag--ggtttaagggtttatgacataacgatgtcggagtcggtctattttcagGGTTGGCACCATGGTGAAGCATAATAATGTTATCCCCAATGGTCACTTCAAGAAGGACTGGCAGAACTATGTGAGGACCTGGTTCAACCAGCCCGCCCGC

upper sequence: GRMZM2G409407_T01 (Zea mays), 3'ss of exon 1
lower sequence: PP1S126_52V6.1 (Physcomitrella patens), 3'ss of exon 1
tgcctgctttgatatcgtgctgctgggctaacgaggatggagctttggcggctccgtttgttgttcagctggatgacgtggttattgcattgacgtgcagGTAAGAAGGTAAGGAAGAGGGCGAAATGGTGAAGCACAACAACGTTATCCCCAACGGGCACTTCAAGAAGCACTGGCAGAACTATGTCAAGACATGGTTC----------------
    || |    |  |||  |  || | |   |    || |  |   |  ||     ||   | || | | | ||| || |  |||    ||| ||| | || |  || | |           | ||||||||||| ||||| ||||||||||| || |||||||||||| ||||||| |||||||| | ||| |||||                 
--tgtgatggagtggcgtatttttgtgttgttgt---tgtaattcgtgaagcaataattag-ggtcggattgttgatgtcgcaatttttgtgatgtgtatgtgaagAGTTGAA----------ACATGGTGAAGCATAACAATGTTATCCCCAATGGCCACTTCAAGAAGGACTGGCAAAACTATGTGAGGACCTGGTTTAACCAGCCCGCCCGCA

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|211263649|gb|FL031053.1|FL031053
EST:     ACTTCACGCCCCTCCGCCGCCGCCGCGTCTCCTCTGCAG                         GTAAGAAGGTAAGGAAGAGGGCGAAATGGTGAAGCACAACAACGTTATCCC
genomic: ACTTCACGCCCCTCCGCCGCCGCCGCGTCTCCTCTGCAGgtacgctagc ... tgacgtgcagGTAAGAAGGTAAGGAAGAGGGCGAAATGGTGAAGCACAACAACGTTATCCC
EST: gi|211266085|gb|FL031064.1|FL031064
EST:     GTCTCCTCTGCAG                         GTAAGAAGGTAAGGAAGAGGGCGAAATGGTGAAGCACAACAACGTTATCCC
genomic: GTCTCCTCTGCAGgtacgctagc ... tgacgtgcagGTAAGAAGGTAAGGAAGAGGGCGAAATGGTGAAGCACAACAACGTTATCCC
EST: gi|211263644|gb|FL031048.1|FL031048
EST:     GTCTCCTCTGCAG                         GTAAGAAGGTAAGGAAGAGGGCGAAATGGTGAAGCACAACAACGTTATCCC
genomic: GTCTCCTCTGCAGgtacgctagc ... tgacgtgcagGTAAGAAGGTAAGGAAGAGGGCGAAATGGTGAAGCACAACAACGTTATCCC
EST: gi|211247721|gb|FL179851.1|FL179851
EST:     AAACTTCCTCCACTTCACGCCCCTCCGCCGCCGCCGCGTCTCCTCTGCAG                         GTAAGAAGGTAAGGAAGAGGGCGAAATGGTGAAGCACAACAACGTTATCCC
genomic: AAACTTCCTCCACTTCACGCCCCTCCGCCGCCGCCGCGTCTCCTCTGCAGgtacgctagc ... tgacgtgcagGTAAGAAGGTAAGGAAGAGGGCGAAATGGTGAAGCACAACAACGTTATCCC
EST: gi|211266082|gb|FL031061.1|FL031061
EST:     GTCTCCTCTGCAG                         GTAAGAAGGTAAGGAAGAGGGCGAAATGGTGAAGCACAACAACGTTATCCC
genomic: GTCTCCTCTGCAGgtacgctagc ... tgacgtgcagGTAAGAAGGTAAGGAAGAGGGCGAAATGGTGAAGCACAACAACGTTATCCC
EST: gi|211266086|gb|FL031065.1|FL031065
EST:     GTCTCCTCTGCAG                         GTAAGAAGGTAAGGAAGAGGGCGAAATGGTGAAGCACAACAACGTTATCCC
genomic: GTCTCCTCTGCAGgtacgctagc ... tgacgtgcagGTAAGAAGGTAAGGAAGAGGGCGAAATGGTGAAGCACAACAACGTTATCCC
EST: gi|211263648|gb|FL031052.1|FL031052
EST:     TCACGCCCCTCCGCCGCCGCCGCGTCTCCTCTGCAG                         GTAAGAAGGTAAGGAAGAGGGCGAAATGGTGAAGCACAACAACGTTATCCC
genomic: TCACGCCCCTCCGCCGCCGCCGCGTCTCCTCTGCAGgtacgctagc ... tgacgtgcagGTAAGAAGGTAAGGAAGAGGGCGAAATGGTGAAGCACAACAACGTTATCCC
EST: gi|211247720|gb|FL179850.1|FL179850
EST:     CCTCCACTTCACGCCCCTCCGCCGCCGCCGCGTCTCCTCTGCAG                         GTAAGAAGGTAAGGAAGAGGGCGAAATGGTGAAGCACAACAACGTTATCCC
genomic: CCTCCACTTCACGCCCCTCCGCCGCCGCCGCGTCTCCTCTGCAGgtacgctagc ... tgacgtgcagGTAAGAAGGTAAGGAAGAGGGCGAAATGGTGAAGCACAACAACGTTATCCC
EST: gi|211456254|gb|FL273553.1|FL273553
EST:     AAACTTCCTCCACTTCACGCCCCTCCGCCGCCGCCGCGTCTCCTCTGCAG                         GTAAGAAGGTAAGGAAGAGGGCGAAATGGTGAAGCACAACAACGTTATCCC
genomic: AAACTTCCTCCACTTCACGCCCCTCCGCCGCCGCCGCGTCTCCTCTGCAGgtacgctagc ... tgacgtgcagGTAAGAAGGTAAGGAAGAGGGCGAAATGGTGAAGCACAACAACGTTATCCC
EST: gi|211266087|gb|FL031066.1|FL031066
EST:     CCGCCGCCGCCGCGTCTCCTCTGCAG                         GTAAGAAGGTAAGGAAGAGGGCGAAATGGTGAAGCACAACAACGTTATCCC
genomic: CCGCCGCCGCCGCGTCTCCTCTGCAGgtacgctagc ... tgacgtgcagGTAAGAAGGTAAGGAAGAGGGCGAAATGGTGAAGCACAACAACGTTATCCC
EST: gi|33091972|gb|CF051966.1|CF051966
EST:     GCCGCGTCTTCTCTGCAG                         GTAAGAAGGTAAGGAAGAGGGCGAAATGGTGAAGCACAACAACGTTATCCC
genomic: GCCGCGTCTCCTCTGCAGgtacgctagc ... tgacgtgcagGTAAGAAGGTAAGGAAGAGGGCGAAATGGTGAAGCACAACAACGTTATCCC
EST: gi|211263643|gb|FL031047.1|FL031047
EST:     GTCTCCTCTGCAG                         GTAAGAAGGTAAGGAAGAGGGCGAAATGGTGAAGCACAACAACGTTATCCC
genomic: GTCTCCTCTGCAGgtacgctagc ... tgacgtgcagGTAAGAAGGTAAGGAAGAGGGCGAAATGGTGAAGCACAACAACGTTATCCC
EST: gi|211263650|gb|FL031054.1|FL031054
EST:     GTCTCCTCTGCAG                         GTAAGAAGGTAAGGAAGAGGGCGAAATGGTGAAGCACAACAACGTTATCCC
genomic: GTCTCCTCTGCAGgtacgctagc ... tgacgtgcagGTAAGAAGGTAAGGAAGAGGGCGAAATGGTGAAGCACAACAACGTTATCCC
EST: gi|76281416|gb|DV020984.1|DV020984
EST:     AAACTTCCTCCACTTCACGCCCCTCCGCCGCCGCCGCGTCTCCTCTGCAG                         GTAAGAAGGTAAGGAAGAGGGCGAAATGGTGAAGCACAACAACGTTATCCC
genomic: AAACTTCCTCCACTTCACGCCCCTCCGCCGCCGCCGCGTCTCCTCTGCAGgtacgctagc ... tgacgtgcagGTAAGAAGGTAAGGAAGAGGGCGAAATGGTGAAGCACAACAACGTTATCCC
EST: gi|78085923|gb|DV514316.1|DV514316
EST:     CCGCCGCCGCCGCGTCTCCTCTGCAG                         GTAAGAAGGTAAGGAAGAGGGCGAAATGGTGAAGCACAACAACGTTATCCC
genomic: CCGCCGCCGCCGCGTCTCCTCTGCAGgtacgctagc ... tgacgtgcagGTAAGAAGGTAAGGAAGAGGGCGAAATGGTGAAGCACAACAACGTTATCCC
EST: gi|6973668|gb|AW438242.1|AW438242
EST:     GCCGCCGCCGCGT-TCCTCTGCAG                         GTAAGAAGGTAAGGAAGAGGGCGAAATGGTGAAGCACAACAACGTTATCCC
genomic: GCCGCCGCCGCGTCTCCTCTGCAGgtacgctagc ... tgacgtgcagGTAAGAAGGTAAGGAAGAGGGCGAAATGGTGAAGCACAACAACGTTATCCC
EST: gi|211266077|gb|FL031056.1|FL031056
EST:     CGCGTCTCCTCTGCAG                         GTAAGAAGGTAAGGWAGAGGGCGAAATGGTGAAGCACAACAACGTTATCCC
genomic: CGCGTCTCCTCTGCAGgtacgctagc ... tgacgtgcagGTAAGAAGGTAAGGAAGAGGGCGAAATGGTGAAGCACAACAACGTTATCCC
EST: gi|211266083|gb|FL031062.1|FL031062
EST:     CTTCACGCCCCTCCGCCGCCGCCGCGTCTCCTCTGCAG                         GTAAGAAGGTAAGGAAGAGGGCGAAATGGTGAAGCACAACAACGTTATCCC
genomic: CTTCACGCCCCTCCGCCGCCGCCGCGTCTCCTCTGCAGgtacgctagc ... tgacgtgcagGTAAGAAGGTAAGGAAGAGGGCGAAATGGTGAAGCACAACAACGTTATCCC
EST: gi|78180971|gb|DV551344.1|DV551344
EST:     GCCGCCGCCGCGTCTCCTCTGCAG                         GTAAGAAGGTAAGGAAGAGGGCGAAATGGTGAAGCACAACAACGTTATCCC
genomic: GCCGCCGCCGCGTCTCCTCTGCAGgtacgctagc ... tgacgtgcagGTAAGAAGGTAAGGAAGAGGGCGAAATGGTGAAGCACAACAACGTTATCCC
EST: gi|211266080|gb|FL031059.1|FL031059
EST:     ACTTCACGCCCCTCCGCCGCCG-CGCGTCTCCTCTGCAG                         GTAAGAAGGTAAGGAAGAGGGCGAAATGGTGAAGCACAACAACGTTATCCC
genomic: ACTTCACGCCCCTCCGCCGCCGCCGCGTCTCCTCTGCAGgtacgctagc ... tgacgtgcagGTAAGAAGGTAAGGAAGAGGGCGAAATGGTGAAGCACAACAACGTTATCCC
EST: gi|211263641|gb|FL031045.1|FL031045
EST:     GTCTCCTCTGCAG                         GTAAGAAGGTNAGGAAGAGGGCGAAATGGTGAAGCACAACAACGTTATCCC
genomic: GTCTCCTCTGCAGgtacgctagc ... tgacgtgcagGTAAGAAGGTAAGGAAGAGGGCGAAATGGTGAAGCACAACAACGTTATCCC
EST: gi|211263645|gb|FL031049.1|FL031049
EST:     GTCTCCTCTGCAG                         GTAAGAAGGTAAGGAAGAGGGCGAAATGGTGAAGCACAACAACGTTATCCC
genomic: GTCTCCTCTGCAGgtacgctagc ... tgacgtgcagGTAAGAAGGTAAGGAAGAGGGCGAAATGGTGAAGCACAACAACGTTATCCC
EST: gi|211266081|gb|FL031060.1|FL031060
EST:     GTCTCCTCTGCAG                         GTAAGAAGGTAAGGAAGAGGGCGAAATGGTGAAGCACAACAACGTTATCCC
genomic: GTCTCCTCTGCAGgtacgctagc ... tgacgtgcagGTAAGAAGGTAAGGAAGAGGGCGAAATGGTGAAGCACAACAACGTTATCCC
EST: gi|211266084|gb|FL031063.1|FL031063
EST:     GTCTCCTCTGCAG                         GTAAGAAGGTAAGGAAGAGGGCGAAATGGTGAAGCACAACAACGTTATCCC
genomic: GTCTCCTCTGCAGgtacgctagc ... tgacgtgcagGTAAGAAGGTAAGGAAGAGGGCGAAATGGTGAAGCACAACAACGTTATCCC


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

tggcggctccgtttgttgttcagctggatgacgtggttattgcattgacgtgcagGTAAGAAGGTAAGGAAGAGGGCGAAATGGTGAAGCACAACAACGTTATCCCCAACGGGCACTTCAAGAAGCACTGGCAGAACTATGTCAAGACATGGTTC
                                          cattgac  putative branch site (score: 3)
                                    ttatt  TA-rich tract
















Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
        10        20        30        40        50        60        70        80        90        100       110       120       130       140       150       160       170       180       190       200       210       220 
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
tgcctgctttgatatcgtgctgctgggctaacgaggatggagctttggcggctccgtttgttgttcagctggatgacgtggttattgcattgacgtgcagGTAAGAAGGTAAGGAAGAGGGCGAAATGGTGAAGCACAACAACGTTATCCCCAACGGGCACTTCAAGAAGCACTGGCAGAACTATGTCAAGACATGGTTC

- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -  AGAAGC
tgcctgc
- - - - - - - - - gctgctg
- - - - - - - - - - - - - - - - - - -tggagct
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - tcagctg
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -attgcat