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...tgtttgtttaagtttggatgacacaattcaaagtttcagttacttgcatgcttccgaatagtctgcttgctgattagccattctgtttacctgtttgtagATGTCATCATTTAGTGAAAGTAAATCAGATGATAAACGTTTTTATATAATTACTCCGACCAAAACACTTCAACTGAGGACTGGTTGCGCAAAGGACCGGG
species | Zea mays |
transcript | GRMZM2G409265_T01 |
intron # | 1 |
splice site | 3' |
intron type | U2 |
EST: GGGTGGCGCGCGGCGCCGGGGAGCGCCCCATCGGATTCGTGCCTCTCAAG ATGTCATCATTTAGTEST: gi|148943630|gb|EC888694.2|EC888694
genomic: GGGTGGCGCGCGGCGCCGGGGAGCGCCCCATCGGATTCGTGCCTCTCAAGgtcacaccgc ... ctgtttgtagATGTCATCATTTAGT
EST: GGGTGGCGCGCGGCGCCGGGGAGCGCCCCATCGGATTCGTGCCTCTCAAG ATGTCATCATTTAGTGAAAGTAAATCAGATGATAAACGTTTTTATATAATTEST: gi|78086831|gb|DV515224.1|DV515224
genomic: GGGTGGCGCGCGGCGCCGGGGAGCGCCCCATCGGATTCGTGCCTCTCAAGgtcacaccgc ... ctgtttgtagATGTCATCATTTAGTGAAAGTAAATCAGATGATAAACGTTTTTATATAATT
EST: GGTGGCGCGCGGCGCCGGGGAGCGCCCCCATCGGATTCGTGCCTCTCAAG ATGTCATCATTTAGTGAAAGTAAATCAGATGATAAACGTTTTTATATAATTEST: gi|211118607|gb|FL188605.1|FL188605
genomic: GGTGGCGCGCGGCGCCGGGGAGCGCCCC-ATCGGATTCGTGCCTCTCAAGgtcacaccgc ... ctgtttgtagATGTCATCATTTAGTGAAAGTAAATCAGATGATAAACGTTTTTATATAATT
EST: GGGTGGCGCGCGGCGCCGGGGAGCGCCCCATCGGATTCGTGCCTCTCAAG ATGTCATCATTTAGTGAAAGTAAATCAGATGATAAACGTTTTTATATAATT
genomic: GGGTGGCGCGCGGCGCCGGGGAGCGCCCCATCGGATTCGTGCCTCTCAAGgtcacaccgc ... ctgtttgtagATGTCATCATTTAGTGAAAGTAAATCAGATGATAAACGTTTTTATATAATT
gcatgcttccgaatagtctgcttgctgattagccattctgtttacctgtttgtagATGTCATCATTTAGTGAAAGTAAATCAGATGATAAACGTTTTTATATAATTACTCCGACCAAAACACTTCAACTGAGGACTGGTTGCGCAAAGGACCGGG
tgctgat putative branch site (score: 3)
tttacct putative PPT
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| tgtttgtttaagtttggatgacacaattcaaagtttcagttacttgcatgcttccgaatagtctgcttgctgattagccattctgtttacctgtttgtagATGTCATCATTTAGTGAAAGTAAATCAGATGATAAACGTTTTTATATAATTACTCCGACCAAAACACTTCAACTGAGGACTGGTTGCGCAAAGGACCGGG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCAAAG
tgtttgt
- - - - - - -ttggatg
- - - - - - - - - - acacaat
- - - - - - - - - - - - - - - - - - - - - - tgcatgc
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -tgcttgc