1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' |
gtccgtccctcctttgtttttcttcttcctctgtgtttttcttttgtgtttttgctacgtgcgtcggtttgttgatctcggtaagtcctccactcaccccgctccgagcctgtgtggattgcagAAGGACCCGCTCGCCGTGAAGGTGAATCAGCTGAGCTCCATCAAGACGCAGCTGCCCTACTCCTACTACTCCCTCCCCTTCTGCAGGCCGGGCACAATCG
species | Zea mays |
transcript | GRMZM2G409104_T01 |
intron # | 1 |
splice site | 3' |
intron type | U2 |
EST: GTGCGCGCGGGTTCTACCTCCCGGGCGTCGCCCCCGCCGGTTTCCTCAAG AAGGACCCGCTCGCCGTGAAGGTGAATCAGCTGAGCTCCATCAAGACGCAGEST: gi|148965278|gb|EE016081.2|EE016081
genomic: GTGCGCGCGGGTTCTACCTCCCGGGCGTCGCCCCCGCCGGTTTCCTCAAGgtccgtccct ... tggattgcagAAGGACCCGCTCGCCGTGAAGGTGAATCAGCTGAGCTCCATCAAGACGCAG
EST: GTGCGCGCGGGTTCTACCTCCCGGGCGTCGCCCCCGCCGGTTTCCTCAAG AAGGACCCGCTCGCCGTGAAGGTGAATCAGCTGAGCTCCATCAAGACGCAGEST: gi|88752328|gb|DY536469.1|DY536469
genomic: GTGCGCGCGGGTTCTACCTCCCGGGCGTCGCCCCCGCCGGTTTCCTCAAGgtccgtccct ... tggattgcagAAGGACCCGCTCGCCGTGAAGGTGAATCAGCTGAGCTCCATCAAGACGCAG
EST: GTGCGCGCGGGTTCTACCTCCCGGGCGTCGCCCCCGCCGGTTCCCTCAAG AAGGACCCGCTCGCCGTGAAGGTGAATCAGCTGAGCTCCATCAAGACGCAGEST: gi|89250725|gb|DY622511.1|DY622511
genomic: GTGCGCGCGGGTTCTACCTCCCGGGCGTCGCCCCCGCCGGTTTCCTCAAGgtccgtccct ... tggattgcagAAGGACCCGCTCGCCGTGAAGGTGAATCAGCTGAGCTCCATCAAGACGCAG
EST: GTGCGCGCGGGTTCTACCTCCCGGGCGTCGCCCCCGCCGGTTTCCTCAAG AAGGACCCGCTCGCCGTGAAGGTGAATCAGCTGAGCTCCATCAAGACGCAGEST: gi|101390012|gb|EB816938.1|EB816938
genomic: GTGCGCGCGGGTTCTACCTCCCGGGCGTCGCCCCCGCCGGTTTCCTCAAGgtccgtccct ... tggattgcagAAGGACCCGCTCGCCGTGAAGGTGAATCAGCTGAGCTCCATCAAGACGCAG
EST: GTGCGCGCGGGTTCTACCTCCCGGGCGTCGCCCCCGCCGGTTTCCTCAAG AAGGACCCGCTCGCCGTGAAGGTGAATCAGCTGAGCTCCATCAAGACGCAGEST: gi|149013945|gb|EE043446.2|EE043446
genomic: GTGCGCGCGGGTTCTACCTCCCGGGCGTCGCCCCCGCCGGTTTCCTCAAGgtccgtccct ... tggattgcagAAGGACCCGCTCGCCGTGAAGGTGAATCAGCTGAGCTCCATCAAGACGCAG
EST: GTGCGCGCGGGTTCTACCTCCCGGGCGTCGCCCCCGCCGGTTTCCTCAAG AAGGACCCGCTCGCCGTGAAGGTGAATCAGCTGAGCTCCATCAAGACGCAGEST: gi|149102922|gb|EE288273.2|EE288273
genomic: GTGCGCGCGGGTTCTACCTCCCGGGCGTCGCCCCCGCCGGTTTCCTCAAGgtccgtccct ... tggattgcagAAGGACCCGCTCGCCGTGAAGGTGAATCAGCTGAGCTCCATCAAGACGCAG
EST: GTGCGCGCGGGTTCTACCTCCCGGGCGTCGCCCCCGCCGGTTTCCTCAAG AAGGACCCGCTCGCCGTGAAGGTGAATCAGCTGAGCTCCATCAAGACGCAGEST: gi|149096266|gb|EE181975.2|EE181975
genomic: GTGCGCGCGGGTTCTACCTCCCGGGCGTCGCCCCCGCCGGTTTCCTCAAGgtccgtccct ... tggattgcagAAGGACCCGCTCGCCGTGAAGGTGAATCAGCTGAGCTCCATCAAGACGCAG
EST: GTGCGCGCGGGTTCTACCTCCCGGGCGTCGCCCCCGCCGGTTTCCTCAAG AAGGACCCGCTCGCCGTGAAGGTGAATCAGCTGAGCTCCATCAAGACGCAG
genomic: GTGCGCGCGGGTTCTACCTCCCGGGCGTCGCCCCCGCCGGTTTCCTCAAGgtccgtccct ... tggattgcagAAGGACCCGCTCGCCGTGAAGGTGAATCAGCTGAGCTCCATCAAGACGCAG
tgttgatctcggtaagtcctccactcaccccgctccgagcctgtgtggattgcagAAGGACCCGCTCGCCGTGAAGGTGAATCAGCTGAGCTCCATCAAGACGCAGCTGCCCTACTCCTACTACTCCCTCCCCTTCTGCAGGCCGGGCACAATCG
cactcac putative branch site (score: 86)
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtccgtccctcctttgtttttcttcttcctctgtgtttttcttttgtgtttttgctacgtgcgtcggtttgttgatctcggtaagtcctccactcaccccgctccgagcctgtgtggattgcagAAGGACCCGCTCGCCGTGAAGGTGAATCAGCTGAGCTCCATCAAGACGCAGCTGCCCTACTCCTACTACTCCCTCCCCTTCTGCAGGCCGGGCACAATCG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CTGCAG