1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' |
...ctgaaaaacattgaattatttgttctagtggggccttgaattttttgtatgtgtatattttgtagtgagaactttgttttaacacaaaattcgtttccagGAAGAGCATGTCAGACTATGATCCTCGTTTGGTTGCACCTACTTGTTTGTATTTGGCATCTAAG
species | Zea mays |
transcript | GRMZM2G408242_T01 |
intron # | 1 |
splice site | 3' |
intron type | U2 |
EST: ACAGCAATAGCTTACTTCAGGCGTGTGTATACAAG GAAGAGCATGTCAGACTATGATCCTCGTTTGGTTGCACCTACTTGTTTGTAEST: gi|5860411|gb|AW011633.1|AW011633
genomic: ACAGCAATAGCTTACTTCAGGCGTGTGTATACAAGgtatgcttct ... tcgtttccagGAAGAGCATGTCAGACTATGATCCTCGTTTGGTTGCACCTACTTGTTTGTA
EST: TTCAGAGTTGTAGCTACAGCAATAGCTTACTTCAGGCGTGTGTATACAAG GAAGAGCATGTCAGACTATGATCCTCGTTTGGTTGCACCTACTTGTTTGTA
genomic: TTCAGAGTTGTAGCTACAGCAATAGCTTACTTCAGGCGTGTGTATACAAGgtatgcttct ... tcgtttccagGAAGAGCATGTCAGACTATGATCCTCGTTTGGTTGCACCTACTTGTTTGTA
tgtatgtgtatattttgtagtgagaactttgttttaacacaaaattcgtttccagGAAGAGCATGTCAGACTATGATCCTCGTTTGGTTGCACCTACTTGTTTGTATTTGGCATCTAAG
ttttaac putative branch site (score: 2)
ttcgtttcc putative PPT
ttttaacacaaaatt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| ctgaaaaacattgaattatttgttctagtggggccttgaattttttgtatgtgtatattttgtagtgagaactttgttttaacacaaaattcgtttccagGAAGAGCATGTCAGACTATGATCCTCGTTTGGTTGCACCTACTTGTTTGTATTTGGCATCTAAG
- -aaaaaca
- - - - - - - - - - - - - - - - - cttgaat
- - - - - - - - - - - - - - - - - - - - - - - gtatgtg
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -acacaaa