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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtagattgggtcctcacatcaacttaactacttaagtgtgaaaaggcagattgggtcctcaccattgtgttgcgcacatgacagGTCGCCAGAACTGGACGAGTAGCACTGGTCCGCGAATCGAAGGTGGACTCCAAGTACCTCCGCGGCTACTCTCTTCCACTGTAGCCTTGCAGTCGTGATG

Basic information

species Zea mays
transcript GRMZM2G407044_T03
intron # 1
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GRMZM2G407044_T03 (Zea mays), 3'ss of exon 1
lower sequence: LOC_Os02g39570.1 (Oryza sativa), 3'ss of exon 11
------------gtagattgggtcctcacatc-aacttaactacttaagtgtgaaaaggcagattgggtcctcaccattg--tgttgcgcacatg---acagGTCGCCAGAACTGGACGAGTAGCACTGGTCCGCGAATCGAAGGTGGACTCCAAGTACCTCCGCGGCTACTCTCTTCCACTGTAG-CCTTGCAGTCGTGATG
             |||||   |     | |||  |  |   ||   |  ||| | |   |    |   ||||| | | ||  | || ||  ||||   ||||||||||||||| || ||||| || ||||||||||||||    || || ||||||||||| || ||||||||  ||||  ||||  ||  |   | ||||  
cctcactattttttagataatggatagaaatccgatctctatatccacatgtaatatacccagctt--tcctcgctaatgcatattccgtccatgaccacagGTCGCCAGAACAGGGCGAGTGGCGCTGGTCCGCGAATCCGGTGTCGATTCCAAGTACCTTCGTGGCTACTCCTTTCCGTTGTAATCCCAGGTCTTGTGAG-
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|32793555|gb|CD945791.1|CD945791
EST:     ACAAGATGGTTGCACTACAAAGGGTATTGGAGCCATATGGCATCTGTGAG                         GTCGCCAGAACTGGACGAGTAGCACTGGTCCGCGAATCGAAGGTGGACTCC
genomic: ACAAGATGGTTGCACTACAAAGGTTATTGGAGCCATATGGCATCTGTGAGgtagattggg ... cacatgacagGTCGCCAGAACTGGACGAGTAGCACTGGTCCGCGAATCGAAGGTGGACTCC
EST: gi|148949306|gb|EC894757.2|EC894757
EST:     ACAAGATGGTTGCACTACAAAGGTTATTGGAGCCATATGGCATCTGTGAG                         GTCGCCAGAACTGGACGAGTAGCACTGGTCCGCGAATCGAAGGTGGACTCC
genomic: ACAAGATGGTTGCACTACAAAGGTTATTGGAGCCATATGGCATCTGTGAGgtagattggg ... cacatgacagGTCGCCAGAACTGGACGAGTAGCACTGGTCCGCGAATCGAAGGTGGACTCC
EST: gi|60343582|gb|DN210555.1|DN210555
EST:     ACAAGATGGTTGCACTACAAAGGTTATTGGAGCCATATGGCATCTGTGAG                         GTCGCCAGAACTGGACGAGTAGCACTGGTCCGCGAATCGAAGGTGGACTCC
genomic: ACAAGATGGTTGCACTACAAAGGTTATTGGAGCCATATGGCATCTGTGAGgtagattggg ... cacatgacagGTCGCCAGAACTGGACGAGTAGCACTGGTCCGCGAATCGAAGGTGGACTCC


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

acttaagtgtgaaaaggcagattgggtcctcaccattgtgttgcgcacatgacagGTCGCCAGAACTGGACGAGTAGCACTGGTCCGCGAATCGAAGGTGGACTCCAAGTACCTCCGCGGCTACTCTCTTCCACTGTAGCCTTGCAGTCGTGATG
                          tcctcac  putative branch site (score: 2)