Sequence
atgc intronic sequence ATGC exonic sequence...atgtttcatgcgttgaatgtactgaactacccaaaatagaaatcaatgtaaatctgtgattgtcggtacggtgcttatgtttcttattttttatatgcagGTGATTGATATTATTCGGTCACATCCTGATCACGAAGTTATCATTGGTGTTGACACTCTTGGAAAAGAAGACCTCTTGCTTCATATATCTAGAGCACTAC
Basic information
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: GRMZM2G404056_T02 (Zea mays), 3'ss of exon 2
lower sequence: LOC_Os01g57440.1 (Oryza sativa), 3'ss of exon 2
atgtttcatgcgttgaatgtactgaactacccaaaatagaa--atcaatgtaaatctgtgattgtcggtacggtgcttatgtttcttattttttatatgcagGTGATTGATATTATTCGGTCACATCCTGATCACGAAGTTATCATTGGTGTTGACACTCTTGGAAAAGAAGACCTCTTGCTTCATATATCTAGAGCACTAC
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-cgcataagtttgtgtttgaattcttcttgctgatatagaattgtagccatcaagctgtgtttctattttctgtacttatatt-ctcagttttgagatgcagATAGTTAATATTATTCGGGCACATCCTGACCATGAAATTATTATTGGTGTTGACACTCTTGGAAAAGAAGATCTCTTGCTTCATATATCCAGAGCACTGCMapped EST sequences
Showing partial alignments of ESTs and genomic sequences. See full alignments
ATGC EST sequence
ATGC genomic sequence (exon)
ATGC genomic sequence (truncated intron)
EST:
gi|76285341|gb|DV024909.1|DV024909EST: ACTGCCACCCATCGCTCAACTTCCCTCCACGCCCCGTCGTCGCTGAGCAG GTGATTGATATTATTCGGTCACATCCTGATCACGAAGTTATCATTGGTGTT
genomic: ACTGCCACCCATCGCTCAACTTCCCTCCACGCCCCGTCGTCGCTGAGCAGgtcagtttcg ... ttatatgcagGTGATTGATATTATTCGGTCACATCCTGATCACGAAGTTATCATTGGTGTT
EST:
gi|211425060|gb|FL453342.1|FL453342EST: ACTGCCACCCATCGCTCAACTTCCCTCCACGCCCCGTCGTCGCTGAGCAG GTGATTGATATTATTCGGTCACATCCTGATCACGAAGTTATCATTGGTGTT
genomic: ACTGCCACCCATCGCTCAACTTCCCTCCACGCCCCGTCGTCGCTGAGCAGgtcagtttcg ... ttatatgcagGTGATTGATATTATTCGGTCACATCCTGATCACGAAGTTATCATTGGTGTT
atgc intronic sequence ATGC exonic sequenceIntronic sequence truncated to 55 bases.atgtaaatctgtgattgtcggtacggtgcttatgtttcttattttttatatgcagGTGATTGATATTATTCGGTCACATCCTGATCACGAAGTTATCATTGGTGTTGACACTCTTGGAAAAGAAGACCTCTTGCTTCATATATCTAGAGCACTAC
tgtttcttatttttt CT-rich tract
ttatgtttcttatttt TA-rich tract
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
atgtttcatgcgttgaatgtactgaactacccaaaatagaaatcaatgtaaatctgtgattgtcggtacggtgcttatgtttcttattttttatatgcagGTGATTGATATTATTCGGTCACATCCTGATCACGAAGTTATCATTGGTGTTGACACTCTTGGAAAAGAAGACCTCTTGCTTCATATATCTAGAGCACTAC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAAGAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGAGCA
- - ttcatgc
- - - - - - ttgaatg
- - - - - - - - - - - - - - acccaaa
- - - - - - - - - - - - - - - - - - - gaaatcaa
- - - - - - - - - - - - - - - - - - - - - - - - - - - tgtgatt
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -ggtgctt