1 5' 3' | 2 5' 3' | 3 5' 3' |
gtacgtcacccctcccgattcgcttgcttcactcttttctctgcacggctggcacggaactactgatcttcggctggtttttgcggctgacgcgtgcctccgcgcagGATCGCTCATGTACCTCTTCCGCGGAGACCTCGGGTGCATGCTGTACACGGGGGACTTCCGGTGGGAGCTCGGATGCGATGAAGCGCGGCGAGCGAAGCA
species | Zea mays |
transcript | GRMZM2G404056_T03 |
intron # | 1 |
splice site | 3' |
intron type | U2 |
EST: CCAGTCCCTCTCCCTTCACGTCACTGCCATCCCCGCGCTGCACTGCCCCG GATCGCTCATGTACCTCTTCCGCGGAGACCTCGGGTGCATGCTGTACACGGEST: gi|78117402|gb|DV535789.1|DV535789
genomic: CCAGTCCCTCTCCCTTCACGTCACTGCCATCCCCGCGCTGCACTGCCCCGgtacgtcacc ... ctccgcgcagGATCGCTCATGTACCTCTTCCGCGGAGACCTCGGGTGCATGCTGTACACGG
EST: CCAGTCCCTCTCCCTTCACGTCACTGCCATCCCCGCGCTGCACTGCCCCG GATCGCTCATGTACCTCTTCCGCGGAGACCTCGGGTGCATGCTGTACACGGEST: gi|78084427|gb|DV512820.1|DV512820
genomic: CCAGTCCCTCTCCCTTCACGTCACTGCCATCCCCGCGCTGCACTGCCCCGgtacgtcacc ... ctccgcgcagGATCGCTCATGTACCTCTTCCGCGGAGACCTCGGGTGCATGCTGTACACGG
EST: CCAGTCCCTCTCCCTTCACGTCACTGCCATCCCCGCGCTGCACTGCCCCG GATCGCTCATGTACCTCTTCCGCGGAGACCTCGGGTGCATGCTGTACACGGEST: gi|78079300|gb|DV507712.1|DV507712
genomic: CCAGTCCCTCTCCCTTCACGTCACTGCCATCCCCGCGCTGCACTGCCCCGgtacgtcacc ... ctccgcgcagGATCGCTCATGTACCTCTTCCGCGGAGACCTCGGGTGCATGCTGTACACGG
EST: CCAGTCCCTCTCCCTTCACGTCACTGCCATCCCCGCGCTGCACTGCCCCG GATCGCTCATGTACCTCTTCCGCGGAGACCTCGGGTGCATGCTGTACACGGEST: gi|76013943|gb|DT941113.1|DT941113
genomic: CCAGTCCCTCTCCCTTCACGTCACTGCCATCCCCGCGCTGCACTGCCCCGgtacgtcacc ... ctccgcgcagGATCGCTCATGTACCTCTTCCGCGGAGACCTCGGGTGCATGCTGTACACGG
EST: CCAGTCCCTCTCCCTTCACGTCACTGCCATCCCCGCGCTGCACTGCCCCG GATCGCTCATGTACCTCTTCCGCGGAGACCTCGGGTGCATGCTGTACACGG
genomic: CCAGTCCCTCTCCCTTCACGTCACTGCCATCCCCGCGCTGCACTGCCCCGgtacgtcacc ... ctccgcgcagGATCGCTCATGTACCTCTTCCGCGGAGACCTCGGGTGCATGCTGTACACGG
cacggaactactgatcttcggctggtttttgcggctgacgcgtgcctccgcgcagGATCGCTCATGTACCTCTTCCGCGGAGACCTCGGGTGCATGCTGTACACGGGGGACTTCCGGTGGGAGCTCGGATGCGATGAAGCGCGGCGAGCGAAGCA
tgcctcc CT-rich tract
ttttt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtacgtcacccctcccgattcgcttgcttcactcttttctctgcacggctggcacggaactactgatcttcggctggtttttgcggctgacgcgtgcctccgcgcagGATCGCTCATGTACCTCTTCCGCGGAGACCTCGGGTGCATGCTGTACACGGGGGACTTCCGGTGGGAGCTCGGATGCGATGAAGCGCGGCGAGCGAAGCA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAGCT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGAAGC