1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' |
...gtgttccttaaggtctatttatgttctttgtttagttttatagaaatacccatatcattttcattatagtggttaaacaatgagacactacctttttcagGCTCAGAAGAGGAAGGCAGGATTGCTTGAGGACGAGGACATTGCTAGTTTGGCATCTGCAGCTTCCGCACAGGGCAGTGAGTTTGCAGCAAAGGAGAATG
species | Zea mays |
transcript | GRMZM2G403149_T01 |
intron # | 1 |
splice site | 3' |
intron type | U2 |
EST: CGCAGGCGCTCCAGGAGCTCGAGCTCAAGAAGCAGGCGCGCAAGGAGAGG GCTCAGAAGAGGAAGGCAGGATTGCTTGAGGACGAGGACATTGCTAGTTTGEST: gi|211260723|gb|FL355576.1|FL355576
genomic: CGCAGGCGCTCCAGGAGCTCGAGCTCAAGAAGCAGGCGCGCAAGGAGAGGgtatgtcatg ... cctttttcagGCTCAGAAGAGGAAGGCAGGATTGCTTGAGGACGAGGACATTGCTAGTTTG
EST: CGCAGGCGCTCCAGGAGCTCGAGCTCAAGAAGCAGGCGCGCAAGGAGAGG GCTCANAAGAGGAAGGCAGGATTGCTTGAGGACGAGGACATTGCTAGTTTGEST: gi|211045149|gb|FL042102.1|FL042102
genomic: CGCAGGCGCTCCAGGAGCTCGAGCTCAAGAAGCAGGCGCGCAAGGAGAGGgtatgtcatg ... cctttttcagGCTCAGAAGAGGAAGGCAGGATTGCTTGAGGACGAGGACATTGCTAGTTTG
EST: CGCAGGCGCTCCAGGAGCTCGAGCTCAAGAAGCAGGCGCGCAAGGAGAGG GCTCAAAAGAGGAAGGCAGGATTGCTTGAGGACGAGGACATTGCTAGTTTGEST: gi|20301145|gb|BQ164088.1|BQ164088
genomic: CGCAGGCGCTCCAGGAGCTCGAGCTCAAGAAGCAGGCGCGCAAGGAGAGGgtatgtcatg ... cctttttcagGCTCAGAAGAGGAAGGCAGGATTGCTTGAGGACGAGGACATTGCTAGTTTG
EST: CGCAGGCGCTCCAGGAGCTCGAGCTCAAGAAGCAGGCGCGCAAGGAGAGG GCTCAGAAGAGGAAGGCAGGATTGCTTGAGGACGAGGACATTGCTAGTTTGEST: gi|148960324|gb|EE153581.2|EE153581
genomic: CGCAGGCGCTCCAGGAGCTCGAGCTCAAGAAGCAGGCGCGCAAGGAGAGGgtatgtcatg ... cctttttcagGCTCAGAAGAGGAAGGCAGGATTGCTTGAGGACGAGGACATTGCTAGTTTG
EST: CGCAGGCGCTCCAGGAGCTCGAGCTCAAGAAGCAGGCGCGCAAGGAGAGG GCTCAGAAGAGGAAGGCAGGATTGCTTGAGGACGAGGACATTGCTAGTTTGEST: gi|149113076|gb|EE295842.2|EE295842
genomic: CGCAGGCGCTCCAGGAGCTCGAGCTCAAGAAGCAGGCGCGCAAGGAGAGGgtatgtcatg ... cctttttcagGCTCAGAAGAGGAAGGCAGGATTGCTTGAGGACGAGGACATTGCTAGTTTG
EST: CGCAGGCGCTCCAGGAGCTCGAGCTCAAGAAGCAGGCGCGCAAGGAGAGG GCTCAGAAGAGGAAGGCAGGATTGCTTGAGGACGAGGACATTGCTAGTTTG
genomic: CGCAGGCGCTCCAGGAGCTCGAGCTCAAGAAGCAGGCGCGCAAGGAGAGGgtatgtcatg ... cctttttcagGCTCAGAAGAGGAAGGCAGGATTGCTTGAGGACGAGGACATTGCTAGTTTG
atacccatatcattttcattatagtggttaaacaatgagacactacctttttcagGCTCAGAAGAGGAAGGCAGGATTGCTTGAGGACGAGGACATTGCTAGTTTGGCATCTGCAGCTTCCGCACAGGGCAGTGAGTTTGCAGCAAAGGAGAATG
ctacctttttc CT-rich tract
atatcattttcattat TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtgttccttaaggtctatttatgttctttgtttagttttatagaaatacccatatcattttcattatagtggttaaacaatgagacactacctttttcagGCTCAGAAGAGGAAGGCAGGATTGCTTGAGGACGAGGACATTGCTAGTTTGGCATCTGCAGCTTCCGCACAGGGCAGTGAGTTTGCAGCAAAGGAGAATG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CTGCAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCAGCT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCAAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGGAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGGAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAGAA
-tgttcct
- - - - - - - - - ttatgtt
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - aaacaat