1 5' 3' | 2 5' 3' | 3 5' 3' |
gtacggcgccccctgtcctcgctgggcacgcgcgcacacactgatgcggcgcgggccggggttgactaatcgagaggggtcggatgggtgcagGGGTGGAGATAGCGGAGAGGTTCGCGTACCACGGGGTGTCGGCGAACCTGATCAGCTACCTGACGGGGCCGCTCGGGGAATCCACCGCGGGCGCGGCGGC
species | Zea mays |
transcript | GRMZM2G400602_T01 |
intron # | 1 |
splice site | 3' |
intron type | U2 |
EST: CGCGTCCCGGTCCGGCACCGGCCGATGGTCCGCCGCGATGTTCGTCCTCG GGGTGGAGATAGCGGAGAGGTTCGCGTACCACGGGGTGTCGGCGAACCTGAEST: gi|91048435|gb|EB158853.1|EB158853
genomic: CGCGTCCCGGTCCGGCACCGGCCGATGGTCCGCCGCGATGTTCGTCCTCGgtacggcgcc ... atgggtgcagGGGTGGAGATAGCGGAGAGGTTCGCGTACCACGGGGTGTCGGCGAACCTGA
EST: CGCGTCCCGGTCCGGCACCGGCCGATGGTCCGCCGCGATGTTCGTCCTCG GGGTGGAGATAGCGGAGAGGTTCGCGTACCACGGGGTGTCGGCGAACCTGAEST: gi|91869515|gb|EB400422.1|EB400422
genomic: CGCGTCCCGGTCCGGCACCGGCCGATGGTCCGCCGCGATGTTCGTCCTCGgtacggcgcc ... atgggtgcagGGGTGGAGATAGCGGAGAGGTTCGCGTACCACGGGGTGTCGGCGAACCTGA
EST: CGCGTCCCGGTCCGGCACCGGCCGATGGTCCGCCGCGATGTTCGTCCTCG GGGTGGAGATAGCGGAGAGGTTCGCGTACCACGGGGTGTCGGCGAACCTGAEST: gi|91049980|gb|EB160398.1|EB160398
genomic: CGCGTCCCGGTCCGGCACCGGCCGATGGTCCGCCGCGATGTTCGTCCTCGgtacggcgcc ... atgggtgcagGGGTGGAGATAGCGGAGAGGTTCGCGTACCACGGGGTGTCGGCGAACCTGA
EST: CGCGTCCCGGTCCGGCACCGGCCGATGGTCCGCCGCGATGTTCGTCCTCG GGGTGGAGATAGCGGAGAGGTTCGCGTACCACGGGGTGTCGGCGAACCTGAEST: gi|211159668|gb|FL391014.1|FL391014
genomic: CGCGTCCCGGTCCGGCACCGGCCGATGGTCCGCCGCGATGTTCGTCCTCGgtacggcgcc ... atgggtgcagGGGTGGAGATAGCGGAGAGGTTCGCGTACCACGGGGTGTCGGCGAACCTGA
EST: CGCGTCCCGGTCCGGCACCGGCCGATGGTCCGCCGCGATGTTCGTCCTCG GGGTGGAGATAGCGGADAGGTTCGCGTACCACGGGGTGTCGGCGAACCTGAEST: gi|37423320|gb|CF649387.1|CF649387
genomic: CGCGTCCCGGTCCGGCACCGGCCGATGGTCCGCCGCGATGTTCGTCCTCGgtacggcgcc ... atgggtgcagGGGTGGAGATAGCGGAGAGGTTCGCGTACCACGGGGTGTCGGCGAACCTGA
EST: CGCGTCCCGGTCCGGCACCGGCCGATGGTCCGCCGCGATGTTCGTCCTCG GGGTGGAGATAGCGGAGAGGTTCGCGTACCACGGGGTGTCGGCGAACCTGAEST: gi|71427083|gb|DR808133.1|DR808133
genomic: CGCGTCCCGGTCCGGCACCGGCCGATGGTCCGCCGCGATGTTCGTCCTCGgtacggcgcc ... atgggtgcagGGGTGGAGATAGCGGAGAGGTTCGCGTACCACGGGGTGTCGGCGAACCTGA
EST: CGCGTCCCGGTCCGGCACCGGCCGATGGTCCGCCGCGATGTTCGTCCTCG GGGTGGAGATAGCGGAGAGGTTCGCGTACCACGGGGTGTCGGCGAACCTGAEST: gi|50335309|gb|CO530435.1|CO530435
genomic: CGCGTCCCGGTCCGGCACCGGCCGATGGTCCGCCGCGATGTTCGTCCTCGgtacggcgcc ... atgggtgcagGGGTGGAGATAGCGGAGAGGTTCGCGTACCACGGGGTGTCGGCGAACCTGA
EST: CGCGTCCCGGTCCGGCACCGGCCGATGGTCCGCCGCGATGTTCGTCCTCG GGGTGGAGATAGCGGAGAGGTTCGCGTACCACGGGGTGTCGGCGAACCTGAEST: gi|211171594|gb|FL423130.1|FL423130
genomic: CGCGTCCCGGTCCGGCACCGGCCGATGGTCCGCCGCGATGTTCGTCCTCGgtacggcgcc ... atgggtgcagGGGTGGAGATAGCGGAGAGGTTCGCGTACCACGGGGTGTCGGCGAACCTGA
EST: CGCGTCCCGGTCCGGCACCGGCCGATGGTCCGCCGCGATGTTCGTCCTCG GGGTGGAGATAGCGGAGAGGTTCGCGTACCACGGGGTGTCGGCGAACCTGAEST: gi|149095442|gb|EE181086.2|EE181086
genomic: CGCGTCCCGGTCCGGCACCGGCCGATGGTCCGCCGCGATGTTCGTCCTCGgtacggcgcc ... atgggtgcagGGGTGGAGATAGCGGAGAGGTTCGCGTACCACGGGGTGTCGGCGAACCTGA
EST: CGCGTCCCGGTCCGGCACCGGCCGATGGTCCGCCGCGATGTTCGTCCTCG GGGTGGAGATAGCGGAGAGGTTCGCGTACCACGGGGTGTCGGCGAACCTGA
genomic: CGCGTCCCGGTCCGGCACCGGCCGATGGTCCGCCGCGATGTTCGTCCTCGgtacggcgcc ... atgggtgcagGGGTGGAGATAGCGGAGAGGTTCGCGTACCACGGGGTGTCGGCGAACCTGA
cactgatgcggcgcgggccggggttgactaatcgagaggggtcggatgggtgcagGGGTGGAGATAGCGGAGAGGTTCGCGTACCACGGGGTGTCGGCGAACCTGATCAGCTACCTGACGGGGCCGCTCGGGGAATCCACCGCGGGCGCGGCGGC
gactaat putative branch site (score: 3)
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtacggcgccccctgtcctcgctgggcacgcgcgcacacactgatgcggcgcgggccggggttgactaatcgagaggggtcggatgggtgcagGGGTGGAGATAGCGGAGAGGTTCGCGTACCACGGGGTGTCGGCGAACCTGATCAGCTACCTGACGGGGCCGCTCGGGGAATCCACCGCGGGCGCGGCGGC
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