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gtctgtgaacctgccatctagaagccactgtcgtttcttaaaattttgattgttttggcagctgctctaaaaattcctccttttgattattctttgacctggaaccccgttcagGGATCTTAGAGCTGAGGCTGGAGCGGCCGGAAGTCAAGAACGCCATTAATTGGGATATGATGAGGATGCTGCGGAGCGCCATAGAGAAGATTCAGGCCGA
species | Zea mays |
transcript | GRMZM2G398500_T01 |
intron # | 1 |
splice site | 3' |
intron type | U2 |
EST: AGCCCAGCCGGAGTCCGTCCGTCTGCAGAAGCACCCGGCACCCAACTCCG GGATCTTAGAGCTGAGGCTGGAGCGGCCGGAAGTCAAGAACGCCATTAATTEST: gi|74232150|gb|DT640064.1|DT640064
genomic: AGCCCAGCCGGAGTCCGTCCGTCTGCAGAAGCACCCGGCACCCAACTCCGgtctgtgaac ... ccccgttcagGGATCTTAGAGCTGAGGCTGGAGCGGCCGGAAGTCAAGAACGCCATTAATT
EST: AGCCCAGCCGGAGTCCGTCCGTCTGCAGAAGCACCCGGCACCCAACTCCG GGATCTTAGAGCTGAGGCTGGAGCGGCCGGAAGTCAAGAACGCCATTAATTEST: gi|211446507|gb|FL092865.1|FL092865
genomic: AGCCCAGCCGGAGTCCGTCCGTCTGCAGAAGCACCCGGCACCCAACTCCGgtctgtgaac ... ccccgttcagGGATCTTAGAGCTGAGGCTGGAGCGGCCGGAAGTCAAGAACGCCATTAATT
EST: AGCCCAGCCGGAGTCCGTCCGTCTGCAGAAGCACCCGGCACCCAACTCCG GGATCTTAGAGCTGAGGCTGGAGCGGCCGGAAGTCAAGAACGCCATTAATTEST: gi|89756234|gb|DY686335.1|DY686335
genomic: AGCCCAGCCGGAGTCCGTCCGTCTGCAGAAGCACCCGGCACCCAACTCCGgtctgtgaac ... ccccgttcagGGATCTTAGAGCTGAGGCTGGAGCGGCCGGAAGTCAAGAACGCCATTAATT
EST: AGCCCAGCCGGAGTCCGTCCGTCTGCAGAAGCACCCGGCACCCAACTCCG GGATCTTAGAGCTGAGGCTGGAGCGGCCGGAAGTCAAGAACGCCATTAATTEST: gi|211253387|gb|FL355069.1|FL355069
genomic: AGCCCAGCCGGAGTCCGTCCGTCTGCAGAAGCACCCGGCACCCAACTCCGgtctgtgaac ... ccccgttcagGGATCTTAGAGCTGAGGCTGGAGCGGCCGGAAGTCAAGAACGCCATTAATT
EST: AGCCCAGCCGGAGTCCGTCCGTCTGCAGAAGCACCCGGCACCCAACTCCG GGATCTTAGAGCTGAGGCTGGAGCGGCCGGAAGTCAAGAACGCCATTAATTEST: gi|211446509|gb|FL092867.1|FL092867
genomic: AGCCCAGCCGGAGTCCGTCCGTCTGCAGAAGCACCCGGCACCCAACTCCGgtctgtgaac ... ccccgttcagGGATCTTAGAGCTGAGGCTGGAGCGGCCGGAAGTCAAGAACGCCATTAATT
EST: AGCCCAGCCGGAGTCCGTCCGTCTGCAGAAGCACCCGGCACCCAACTCCG GGATCTTAGAGCTGAGGCTGGAGCGGCCGGAAGTCAAGAACGCCATTAATTEST: gi|211522191|gb|FL317001.1|FL317001
genomic: AGCCCAGCCGGAGTCCGTCCGTCTGCAGAAGCACCCGGCACCCAACTCCGgtctgtgaac ... ccccgttcagGGATCTTAGAGCTGAGGCTGGAGCGGCCGGAAGTCAAGAACGCCATTAATT
EST: AGCCCAGCCGGAGTCCGTCCGTCTGCAGAAGCACCCGGCACCCAACTCCG GGATCTTAGAGCTGAGGCTGGAGCGGCCGGAAGTCAAGAACGCCATTAATTEST: gi|211078098|gb|FL332537.1|FL332537
genomic: AGCCCAGCCGGAGTCCGTCCGTCTGCAGAAGCACCCGGCACCCAACTCCGgtctgtgaac ... ccccgttcagGGATCTTAGAGCTGAGGCTGGAGCGGCCGGAAGTCAAGAACGCCATTAATT
EST: AGCCCAGCCGGAGTCCGTCCGTCTGCAGAAGCACCCGGCACCCAACTCCG GGATCTTAGAGCTGAGGCTGGAGCGGCCGGAAGTCAAGAACGCCATTAATTEST: gi|74244449|gb|DT652363.1|DT652363
genomic: AGCCCAGCCGGAGTCCGTCCGTCTGCAGAAGCACCCGGCACCCAACTCCGgtctgtgaac ... ccccgttcagGGATCTTAGAGCTGAGGCTGGAGCGGCCGGAAGTCAAGAACGCCATTAATT
EST: AGCCCAGCCGGAGTCCGTCCGTCTGCAGAAGCACCCGGCACCCAACTCCG GGATCTTAGAGCTGAGGCTGGAGCGGCCGGAAGTCAAGAACGCCATTAATTEST: gi|71439182|gb|DR820232.1|DR820232
genomic: AGCCCAGCCGGAGTCCGTCCGTCTGCAGAAGCACCCGGCACCCAACTCCGgtctgtgaac ... ccccgttcagGGATCTTAGAGCTGAGGCTGGAGCGGCCGGAAGTCAAGAACGCCATTAATT
EST: AGCCCAGCCGGAGTCCGTCCGTCTGCAGAAGCACCCGGCACCCAACTCCG GGATCTTAGAGCTGAGGCTGGAGCGGCCGGAAGTCAAGAACGCCATTAATTEST: gi|5566932|gb|AI881843.1|AI881843
genomic: AGCCCAGCCGGAGTCCGTCCGTCTGCAGAAGCACCCGGCACCCAACTCCGgtctgtgaac ... ccccgttcagGGATCTTAGAGCTGAGGCTGGAGCGGCCGGAAGTCAAGAACGCCATTAATT
EST: AGCCCAGCCGGAGTCCGTCCGTCTGCAGAAGCACCCGGCACCCAACTCCG GGATCTTAGAGCTGAGGCTGGAACGGCCGGAAGTCAAGAACGCCATTAATTEST: gi|101400934|gb|EB822151.1|EB822151
genomic: AGCCCAGCCGGAGTCCGTCCGTCTGCAGAAGCACCCGGCACCCAACTCCGgtctgtgaac ... ccccgttcagGGATCTTAGAGCTGAGGCTGGAGCGGCCGGAAGTCAAGAACGCCATTAATT
EST: AGCCCAGCCGGAGTCCGTCCGTCTGCAGAAGCACCCGGCACCCAACTCCG GGATCTTAGAGCTGAGGCTGGAGCGGCCGGAAGTCAAGAACGCCATTAATTEST: gi|78110970|gb|DV529368.1|DV529368
genomic: AGCCCAGCCGGAGTCCGTCCGTCTGCAGAAGCACCCGGCACCCAACTCCGgtctgtgaac ... ccccgttcagGGATCTTAGAGCTGAGGCTGGAGCGGCCGGAAGTCAAGAACGCCATTAATT
EST: AGCCCAGCCGGAGTCCGTCCGTCTGCAGAAGCACCCGGCACCCAACTCCG GGATCTTAGAGCTGAGGCTGGAGCGGCCGGAAGTCAAGAACGCCATTAATT
genomic: AGCCCAGCCGGAGTCCGTCCGTCTGCAGAAGCACCCGGCACCCAACTCCGgtctgtgaac ... ccccgttcagGGATCTTAGAGCTGAGGCTGGAGCGGCCGGAAGTCAAGAACGCCATTAATT
agctgctctaaaaattcctccttttgattattctttgacctggaaccccgttcagGGATCTTAGAGCTGAGGCTGGAGCGGCCGGAAGTCAAGAACGCCATTAATTGGGATATGATGAGGATGCTGCGGAGCGCCATAGAGAAGATTCAGGCCGA
ccccgttc CT-rich tract
ttttgattattcttt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtctgtgaacctgccatctagaagccactgtcgtttcttaaaattttgattgttttggcagctgctctaaaaattcctccttttgattattctttgacctggaaccccgttcagGGATCTTAGAGCTGAGGCTGGAGCGGCCGGAAGTCAAGAACGCCATTAATTGGGATATGATGAGGATGCTGCGGAGCGCCATAGAGAAGATTCAGGCCGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGGAT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGGATG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - ATGCTG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGCTGC