Sequence
atgc intronic sequence ATGC exonic sequence...tgagttgactgcgttgcctttcgtgtgacgggcggtgacgagcttgtgtttcgttcggggattttgttagcccaaatagtctgcatggattttgtttcagGGGTACGTTGGCAACAAATCGGCCGTCTTCCCCCTGCAGCTCCTCGGCTTTGATGTGGATCCAATAAACTCTACAGTTTTTCTAACCATACAGTGATACA
Basic information
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: GRMZM2G398107_T01 (Zea mays), 3'ss of exon 1
lower sequence: LOC_Os12g40830.1 (Oryza sativa), 3'ss of exon 2
tgagt---tgactgcgttgcctttcgtgtgacgggcggtgacgagcttgtgtttcgttcggggattttgttagcccaaatagtctgcatggattttgt--ttcagGGGTACGTTGGCAACAAATCGGCCGTCTTCCCCCTGCAGCTCCTCGGCTTTGATGTGGATCCAATAAACTC--TACAGTTTTTCTAACCATACAGTGATACA
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ttagtgtatgatggatttgttttacaagtagtgaattatgtt---ttagtttttcgctttgatatgta--tggtctgttgggcctgccttttttttttaatttagGGATACGTTGGCAACAAATCAGCAGTCTTTCCCCTGCAACTCCTGGGCTTTGATGTGGATCCGATAAACTCGGTACAGTTTT-CTAATCATACAGGTAGAG-
upper sequence: GRMZM2G398107_T01 (Zea mays), 3'ss of exon 1
lower sequence: LOC_Os12g40830.3 (Oryza sativa), 3'ss of exon 2
tgagt---tgactgcgttgcctttcgtgtgacgggcggtgacgagcttgtgtttcgttcggggattttgttagcccaaatagtctgcatggattttgt--ttcagGGGTACGTTGGCAACAAATCGGCCGTCTTCCCCCTGCAGCTCCTCGGCTTTGATGTGGATCCAATAAACTC--TACAGTTTTTCTAACCATACAGTGATACA
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ttagtgtatgatggatttgttttacaagtagtgaattatgtt---ttagtttttcgctttgatatgta--tggtctgttgggcctgccttttttttttaatttagGGATACGTTGGCAACAAATCAGCAGTCTTTCCCCTGCAACTCCTGGGCTTTGATGTGGATCCGATAAACTCGGTACAGTTTT-CTAATCATACAG------- atgc intronic sequence ATGC exonic sequenceIntronic sequence truncated to 55 bases.gtgtttcgttcggggattttgttagcccaaatagtctgcatggattttgtttcagGGGTACGTTGGCAACAAATCGGCCGTCTTCCCCCTGCAGCTCCTCGGCTTTGATGTGGATCCAATAAACTCTACAGTTTTTCTAACCATACAGTGATACA
ttttgtttc CT-rich tract
attttgtta TA-rich tract
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
tgagttgactgcgttgcctttcgtgtgacgggcggtgacgagcttgtgtttcgttcggggattttgttagcccaaatagtctgcatggattttgtttcagGGGTACGTTGGCAACAAATCGGCCGTCTTCCCCCTGCAGCTCCTCGGCTTTGATGTGGATCCAATAAACTCTACAGTTTTTCTAACCATACAGTGATACA
- - -tgactgc
- - - - - - - tgccttt
- - - - - - - - - - - - - - - - - - - - -gcttgtg
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -ttttgtt
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -tgcatgg