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 5'  3'   		2  
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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

...tcaaatgttccgcattagcttgcaacccaaagtcttccgcagatagtaatgatatacggaatatcacatttggcagttgatattgattatttaggcgaagGGAAATGGCAACCGTTCCAGGGGATCTGATCTGGCAGGTTGTGAGGAAGAACAACTCCTTCCTTGTGAAGCAGTTCGGCAACGGCAATGCCAAGGTGCAG

Basic information

species Zea mays
transcript GRMZM2G394827_T07
intron # 1
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GRMZM2G394827_T07 (Zea mays), 3'ss of exon 1
lower sequence: LOC_Os05g46430.2 (Oryza sativa), 3'ss of exon 1
-tcaaatgttccgcattagc--ttgcaacccaaagtc---ttccgcagatagtaatgatatacggaatatcacatttggcagttgatattgattatttaggcgaagGGAAATGGCAACCGTTCCAGGGGATCTGATCTGGCAGGTTGTGAGGAAGAACAACTCCTTCCTTGTGAAGCAGTTCGGCAACGGCAATGCCAAGGTGCAG
  |||||||| ||   ||    |   |       |||   ||   | | |  | || |  ||| | || | ||| | ||  |||| | ||| |||| ||||||||| |||||||| || ||||| | |  | |||||||| || |||| | ||||||||||| |||||| |||||||||||||| ||  |||||||||||      
ggcaaatgttgcgttataataatcatatatatgggtcactttttcctgctgatcattagttacaggatcttacagtaggttgttggttttggttatgtagGCGAAGCGAAATGGCGACGGTTCCGGAGCCTTTGATCTGGGAGATTGTCAAGAAGAACAACTGCTTCCTGGTGAAGCAGTTCGGGAATAGCAATGCCAAG------

upper sequence: GRMZM2G394827_T07 (Zea mays), 3'ss of exon 1
lower sequence: LOC_Os02g57540.1 (Oryza sativa), 3'ss of exon 1
-----tcaaatgttccgcattagctt-gcaacccaa-agtcttccgcagatagtaatgatatacggaatatcacatttggcagttgatattgattatttaggcgaagGGAAATGGCAACCGTTCCAGGGGATCTGATCTGGCAGGTTGTGAGGAAGAACAACTCCTTCCTTGTGAAGCAGTTCGGCAACGGCAATGCCAAGGTGCAG
      | |  |||  | | |   || ||     ||  |||       | |   |  |  ||  |  ||     | | | |  |   | ||| | || |||    || |||||||| || ||||| | |  | || ||||| || |||||| ||||||||||| |||||| ||||||||||| || ||| |||||||||||      
ttgctgccagcgttgtgtaatgtttttgcgtgttaatggtcacttagtggtctgatggtcatttgctatggtgtaatggtcgatctgt-ttggtgatgtagCTACAGCGAAATGGCGACGGTTCCGGAGCCTTTGTTCTGGGAGATTGTGAAGAAGAACAACTGCTTCCTCGTGAAGCAGTTTGGAAACAGCAATGCCAAG------
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|76018118|gb|DT945288.1|DT945288
EST:     CAGGAACAGAGCGAGGCGACGCCGCGGCACCTCTTCTCCGGCGAAG                    
genomic: CAGGAACAGAGCGAGGCGACGCCGCGGCACCTCTTCT-C--C---Ggtaagtgaga ... ttagg
EST: gi|60349877|gb|DN216850.1|DN216850
EST:     GAACAGAGCGAGGCGACGCCGCGGCACCTCTTCTCCGGCGAAG                    
genomic: GAACAGAGCGAGGCGACGCCGCGGCACCTCTTCT-C--C---Ggtaagtgaga ... ttagg
EST: gi|211521192|gb|FL395747.1|FL395747
EST:     CACCTCAACCCAGGAACAGAGCGAGGCGACGCCGCGGCACCTCTTCTCCGGCGAAG                    
genomic: CACCTCAACCCAGGAACAGAGCGAGGCGACGCCGCGGCACCTCTTCT-C--C---Ggtaagtgaga ... ttagg
EST: gi|211128401|gb|FL407362.1|FL407362
EST:     CACCTCAACCCAGGAACAGAGCGAGGCGACG-CGCGGCACCTCTTCTCCGGCGAAG                    
genomic: CACCTCAACCCAGGAACAGAGCGAGGCGACGCCGCGGCACCTCTTCT-C--C---Ggtaagtgaga ... ttagg
EST: gi|50329125|gb|CO524251.1|CO524251
EST:     CACCTCAACCCAGGAACAGAGCGAGGCGACGCCGCGGCACCTCTTCTCCGGCGAAG                    
genomic: CACCTCAACCCAGGAACAGAGCGAGGCGACGCCGCGGCACCTCTTCT-C--C---Ggtaagtgaga ... ttagg
EST: gi|60395962|gb|DN228832.1|DN228832
EST:     CTCAACCCAGGAACAGAGCGAGGCGACGCCGCGGCACCTCTTCTCCGGCGAAG                    
genomic: CTCAACCCAGGAACAGAGCGAGGCGACGCCGCGGCACCTCTTCT-C--C---Ggtaagtgaga ... ttagg
EST: gi|211311532|gb|FL415340.1|FL415340
EST:     CACCTCAACCCAGGAACAGAGCGAGGCGACGCCGCGGCACCTCTTCTCCGGCGAAG                    
genomic: CACCTCAACCCAGGAACAGAGCGAGGCGACGCCGCGGCACCTCTTCT-C--C---Ggtaagtgaga ... ttagg
EST: gi|60350633|gb|DN217606.1|DN217606
EST:     CCAGGAACAGAGCGAGGCGACGCCGCGGCACCTCTTCTCCGGCGAAG                    
genomic: CCAGGAACAGAGCGAGGCGACGCCGCGGCACCTCTTCT-C--C---Ggtaagtgaga ... ttagg
EST: gi|60394141|gb|DN227011.1|DN227011
EST:     CAGGAACAAGAGCGAGGCGACGCCGCGGCACCTCTTCTCCGGCGAAG                    
genomic: CAGGAAC-AGAGCGAGGCGACGCCGCGGCACCTCTTCT-C--C---Ggtaagtgaga ... ttagg
EST: gi|211154939|gb|FL392736.1|FL392736
EST:     CACCTCAACCCAGGAACAGAGCGAGGCGACGCCGCGGCACCTCTTCTCCGGCGAAG                    
genomic: CACCTCAACCCAGGAACAGAGCGAGGCGACGCCGCGGCACCTCTTCT-C--C---Ggtaagtgaga ... ttagg
EST: gi|60358531|gb|DN225504.1|DN225504
EST:     GGCGACGCCGCGGCACCTCTTCTCCGGCGAAG                    
genomic: GGCGACGCCGCGGCACCTCTTCT-C--C---Ggtaagtgaga ... ttagg
EST: gi|29130658|gb|CB381362.1|CB381362
EST:     TCAACCCAGGAACAGAGCGAGGCGACGCCGCGGCACCTCTTCTCCGGCGAAG                    
genomic: TCAACCCAGGAACAGAGCGAGGCGACGCCGCGGCACCTCTTCT-C--C---Ggtaagtgaga ... ttagg
EST: gi|211059951|gb|FL385580.1|FL385580
EST:     CACCTCAACCCAGGAACAGAGCGAGGCGACGCCGCGGCACCTCTTCTCCGGCGAAG                    
genomic: CACCTCAACCCAGGAACAGAGCGAGGCGACGCCGCGGCACCTCTTCT-C--C---Ggtaagtgaga ... ttagg
EST: gi|211071746|gb|FL413441.1|FL413441
EST:     CACCTCAACCCAGGAACAGAGCGAGGCGACGCCGCGGCACCTCTTCTCCGGCGAAG                    
genomic: CACCTCAACCCAGGAACAGAGCGAGGCGACGCCGCGGCACCTCTTCT-C--C---Ggtaagtgaga ... ttagg
EST: gi|60341275|gb|DN208248.1|DN208248
EST:     GGCGACGCCGCGGCACCTCTTCTCCGGCGAAG                    
genomic: GGCGACGCCGCGGCACCTCTTCT-C--C---Ggtaagtgaga ... ttagg
EST: gi|84976891|gb|DW475313.1|DW475313
EST:     CACCTCAACCCAGGAACAGAGCGAGGCGACGCCGCGGCACCTCTTCTCCGGCGAAG                    
genomic: CACCTCAACCCAGGAACAGAGCGAGGCGACGCCGCGGCACCTCTTCT-C--C---Ggtaagtgaga ... ttagg
EST: gi|60338468|gb|DN205441.1|DN205441
EST:     ACCTCAACCCAGGAACAGAGCGAGGCGACGCCGCGGCACCTCTTCTCCGGCGAAG                    
genomic: ACCTCAACCCAGGAACAGAGCGAGGCGACGCCGCGGCACCTCTTCT-C--C---Ggtaagtgaga ... ttagg
EST: gi|29946219|gb|CB816039.1|CB816039
EST:     CTCAACCCAGGAACAGAGCGAGGCGACGCCGCGGCACCTCTTCTCCGGCGAAG                    
genomic: CTCAACCCAGGAACAGAGCGAGGCGACGCCGCGGCACCTCTTCT-C--C---Ggtaagtgaga ... ttagg
EST: gi|4887512|gb|AI677611.1|AI677611
EST:     C-CCTCAACCCAGG-ACAGAGCGAGGCGACGCCGCGGCACCTCTTCTCCGGCGAAG                    
genomic: CACCTCAACCCAGGAACAGAGCGAGGCGACGCCGCGGCACCTCTTCT-C--C---Ggtaagtgaga ... ttagg
EST: gi|88753037|gb|DY537178.1|DY537178
EST:     GCGAGGCGACGCCGCGGCACCTCTTCTCCGGCGAAG                    
genomic: GCGAGGCGACGCCGCGGCACCTCTTCT-C--C---Ggtaagtgaga ... ttagg
EST: gi|211429415|gb|FL420681.1|FL420681
EST:     CACCTCAACCCAGGAACAGAGCGAGGCGACG-CGCGGCACCTCTTCTCCGGCGAAG                    
genomic: CACCTCAACCCAGGAACAGAGCGAGGCGACGCCGCGGCACCTCTTCT-C--C---Ggtaagtgaga ... ttagg
EST: gi|211309816|gb|FL427595.1|FL427595
EST:     CACCTCAACCCAGGAACAGAGCGAGGCGACG-CGCGGCACCTCTTCTCCGGCGAAG                    
genomic: CACCTCAACCCAGGAACAGAGCGAGGCGACGCCGCGGCACCTCTTCT-C--C---Ggtaagtgaga ... ttagg
EST: gi|211233830|gb|FL389693.1|FL389693
EST:     CACCTCAACCCAGGAACAGAGCGAGGCGACG-CGCGGCACCTCTTCTCCGGCGAAG                    
genomic: CACCTCAACCCAGGAACAGAGCGAGGCGACGCCGCGGCACCTCTTCT-C--C---Ggtaagtgaga ... ttagg
EST: gi|76011773|gb|DT938943.1|DT938943
EST:     CAGGAACAGAGCGAGGCGACGCCGCGGCACCTCTTCTCCGGCGAAG                    
genomic: CAGGAACAGAGCGAGGCGACGCCGCGGCACCTCTTCT-C--C---Ggtaagtgaga ... ttagg
EST: gi|42491789|gb|CK700835.1|CK700835
EST:     GGCGACGCCGCGGCACCTCTTCTCCGGCGAAG                    
genomic: GGCGACGCCGCGGCACCTCTTCT-C--C---Ggtaagtgaga ... ttagg
EST: gi|211048382|gb|FL399867.1|FL399867
EST:     CACCTCAACCCAGGAACAGAGCGAGGCGACGCCGCGGCACCTCTTCTCCGGCGAAG                    
genomic: CACCTCAACCCAGGAACAGAGCGAGGCGACGCCGCGGCACCTCTTCT-C--C---Ggtaagtgaga ... ttagg
EST: gi|71421268|gb|DR805365.1|DR805365
EST:     CTCAACCCAGGAACAGAGCGAGGCGACGCCGCGGCACCTCTTCTCCGGCGAAG                    
genomic: CTCAACCCAGGAACAGAGCGAGGCGACGCCGCGGCACCTCTTCT-C--C---Ggtaagtgaga ... ttagg
EST: gi|211501632|gb|FL378773.1|FL378773
EST:     CACCTCAACCCAGGAACAGAGCGAGGCGACGCCGCGGCA-CTCTTCTCCGGCGAAG                    
genomic: CACCTCAACCCAGGAACAGAGCGAGGCGACGCCGCGGCACCTCTTCT-C--C---Ggtaagtgaga ... ttagg
EST: gi|211327528|gb|FL370111.1|FL370111
EST:     CACCTCAACCCAGGAACAGAGCGAGGCGACG-CGCGGCACCTCTTCTCCGGCGAAG                    
genomic: CACCTCAACCCAGGAACAGAGCGAGGCGACGCCGCGGCACCTCTTCT-C--C---Ggtaagtgaga ... ttagg
EST: gi|211536633|gb|FL412555.1|FL412555
EST:     CACCTCAACCCAGGAACAGAGCGAGGCGACGCCGCGGCACCTCTTCTCCGGCGAAG                    
genomic: CACCTCAACCCAGGAACAGAGCGAGGCGACGCCGCGGCACCTCTTCT-C--C---Ggtaagtgaga ... ttagg
EST: gi|211099998|gb|FL395937.1|FL395937
EST:     CACCTCAACCCAGGAACAGAGCGAGGCGACGCCGCGGCACCTCTTCTCCGGCGAAG                    
genomic: CACCTCAACCCAGGAACAGAGCGAGGCGACGCCGCGGCACCTCTTCT-C--C---Ggtaagtgaga ... ttagg
EST: gi|28910252|gb|CB331346.1|CB331346
EST:     ACCTCAACCCAGGAACAGAGCGAGGCGACGCCGCGGCACCTCTTCTCCGGGAAG                     
genomic: ACCTCAACCCAGGAACAGAGCGAGGCGACGCCGCGGCACCTCTTCTCC-----Ggtaagtgaga ... ttaggc
EST: gi|211106641|gb|FL406858.1|FL406858
EST:     CACCTCAACCCAGGAACAGAGCGAGGCGACGCCGCGGCACCTCTTCTCCGGCGAAG                    
genomic: CACCTCAACCCAGGAACAGAGCGAGGCGACGCCGCGGCACCTCTTCT-C--C---Ggtaagtgaga ... ttagg
EST: gi|60351047|gb|DN218020.1|DN218020
EST:     CACCTCAACCCAGGAACAGAGCGAGGCGACGCCGCGGCACCTCTTCTCCGGCGAAG                    
genomic: CACCTCAACCCAGGAACAGAGCGAGGCGACGCCGCGGCACCTCTTCT-C--C---Ggtaagtgaga ... ttagg
EST: gi|211341213|gb|FL389719.1|FL389719
EST:     CACCTCAACCCAGGAACAGAGCGAGGCGACGCCGCGGCACCTCTTCTCCGGCGAAG                    
genomic: CACCTCAACCCAGGAACAGAGCGAGGCGACGCCGCGGCACCTCTTCT-C--C---Ggtaagtgaga ... ttagg
EST: gi|211441963|gb|FL416334.1|FL416334
EST:     CACCTCAACCCAGGAACAGAGCGAGGCGACGCCGCGGCACCTCTTCTCCGGCGAAG                    
genomic: CACCTCAACCCAGGAACAGAGCGAGGCGACGCCGCGGCACCTCTTCT-C--C---Ggtaagtgaga ... ttagg
EST: gi|211261884|gb|FL409713.1|FL409713
EST:     CACCTCAACCCAGGAACAGAGCGAGGCGACGCCGCGGCACCTCTTCTCCGGCGAAG                    
genomic: CACCTCAACCCAGGAACAGAGCGAGGCGACGCCGCGGCACCTCTTCT-C--C---Ggtaagtgaga ... ttagg
EST: gi|211296829|gb|FL396158.1|FL396158
EST:     CACCTCAACCCAGGAACAGAGCGAGGCGACGCCGCGGCACCTCTTCTCCGGCGAAG                    
genomic: CACCTCAACCCAGGAACAGAGCGAGGCGACGCCGCGGCACCTCTTCT-C--C---Ggtaagtgaga ... ttagg
EST: gi|76283606|gb|DV023174.1|DV023174
EST:     CAACCCAGGAACAGAGCGAGGCGACGCCGCGGCACCTCTTCTCCGGCGAAG                    
genomic: CAACCCAGGAACAGAGCGAGGCGACGCCGCGGCACCTCTTCT-C--C---Ggtaagtgaga ... ttagg
EST: gi|211358242|gb|FL402303.1|FL402303
EST:     CACCTCAACCCAGGAACAGAGCGAGGCGACGCCGCGGCACCTCTTCTCCGGCGAAG                    
genomic: CACCTCAACCCAGGAACAGAGCGAGGCGACGCCGCGGCACCTCTTCT-C--C---Ggtaagtgaga ... ttagg
EST: gi|211428471|gb|FL372123.1|FL372123
EST:     CACCTCAACCCAGGAACAGAGCGAGGCGACGCCGCGGCACCTCTTCTCCGGCGAAG                    
genomic: CACCTCAACCCAGGAACAGAGCGAGGCGACGCCGCGGCACCTCTTCT-C--C---Ggtaagtgaga ... ttagg
EST: gi|211184986|gb|FL404788.1|FL404788
EST:     CACCTCAACCCAGGAACAGAGCGAGGCGACGCCGCGGCACCTCTTCTCCGGCGAAG                    
genomic: CACCTCAACCCAGGAACAGAGCGAGGCGACGCCGCGGCACCTCTTCT-C--C---Ggtaagtgaga ... ttagg
EST: gi|60354481|gb|DN221454.1|DN221454
EST:     AGCGAGGCGACGCCGCGGCACCTCTTCTCCGGCGAAG                    
genomic: AGCGAGGCGACGCCGCGGCACCTCTTCT-C--C---Ggtaagtgaga ... ttagg
EST: gi|50323417|gb|CO518543.1|CO518543
EST:     CTCAACCCAGGAACAGAGCGAGGCGACGCCGCGGCACCTCTTCTCCGGCGAAG                    
genomic: CTCAACCCAGGAACAGAGCGAGGCGACGCCGCGGCACCTCTTCT-C--C---Ggtaagtgaga ... ttagg
EST: gi|74241859|gb|DT649773.1|DT649773
EST:     CACCTCAACCCAGGAACAGAGCGAGGCGACGCCGCGGCACCTCTTCTCCGGCGAAG                    
genomic: CACCTCAACCCAGGAACAGAGCGAGGCGACGCCGCGGCACCTCTTCT-C--C---Ggtaagtgaga ... ttagg
EST: gi|76018117|gb|DT945287.1|DT945287
EST:     CAGGAACAGAGCGAGGCGACGCCGCGGCACCTCTTCTCCGGCGAAG                    
genomic: CAGGAACAGAGCGAGGCGACGCCGCGGCACCTCTTCT-C--C---Ggtaagtgaga ... ttagg
EST: gi|211277461|gb|FL423583.1|FL423583
EST:     AACCCAGGAACAGAGCGAGGCGACGCCGCGGCACCTCYTCTCCGGCGAAG                         GGAAATGGCAACCGTTCCAGGGGATCTGATCTGGCAGGTTGTGAGGAAGA
genomic: AACCCAGGAACAGAGCGAGGCGACGCCGCGGCACCTCTTCT-C--C---Ggtaagtgaga ... ttaggcgaagGGAAATGGCAACCGTTCCAGGGGATCTGATCTGGCAGGTTGTGAGGAAGA
EST: gi|211539521|gb|FL409051.1|FL409051
EST:     CACCTCAACCCAGGAACAGAGCGAGGCGACGCCGCGGCACCTCTTCTCCGGCGAAG                    
genomic: CACCTCAACCCAGGAACAGAGCGAGGCGACGCCGCGGCACCTCTTCT-C--C---Ggtaagtgaga ... ttagg
EST: gi|211053915|gb|FL383318.1|FL383318
EST:     GAGGCGACGCCGCGGCACCTCTTCTCCGGCGAAG                    
genomic: GAGGCGACGCCGCGGCACCTCTTCT-C--C---Ggtaagtgaga ... ttagg
EST: gi|31405927|gb|CD484659.1|CD484659
EST:     CCTCAACCCAGGAACAGAGCGAGGCGACGCCGCGGCACCTCTTCTCCGGCGAAG                    
genomic: CCTCAACCCAGGAACAGAGCGAGGCGACGCCGCGGCACCTCTTCT-C--C---Ggtaagtgaga ... ttagg
EST: gi|60359253|gb|DN226226.1|DN226226
EST:     CCCAGGAACAGAGCGAGGCGACGCCGCGGCACCTCTTCTCCGGCGAAG                    
genomic: CCCAGGAACAGAGCGAGGCGACGCCGCGGCACCTCTTCT-C--C---Ggtaagtgaga ... ttagg
EST: gi|211019622|gb|FL388979.1|FL388979
EST:     AGGAACAGAGCGAGGCGACGCCGCGGCACCTCTTCTCCGGCGAAG                    
genomic: AGGAACAGAGCGAGGCGACGCCGCGGCACCTCTTCT-C--C---Ggtaagtgaga ... ttagg
EST: gi|28910539|gb|CB331489.1|CB331489
EST:     TCAACCCAGGAACAGAGCGAGGCGACGCCGCGGCACCTCTTCTCCGGCGAAG                    
genomic: TCAACCCAGGAACAGAGCGAGGCGACGCCGCGGCACCTCTTCT-C--C---Ggtaagtgaga ... ttagg
EST: gi|60356087|gb|DN223060.1|DN223060
EST:     CCAGGAACAGAGCGAGGCGACGCCGCGGCACCTCTTCTCCGGCGAAG                    
genomic: CCAGGAACAGAGCGAGGCGACGCCGCGGCACCTCTTCT-C--C---Ggtaagtgaga ... ttagg
EST: gi|211498792|gb|FL369829.1|FL369829
EST:     CACCTCAACCCAGGAACAGAGCGAGGCGACGCCGCGGCACCTCTTCTCCGGCGAAG                    
genomic: CACCTCAACCCAGGAACAGAGCGAGGCGACGCCGCGGCACCTCTTCT-C--C---Ggtaagtgaga ... ttagg
EST: gi|5455883|gb|AI833573.1|AI833573
EST:     CTCAACCCAGGAACAGAGCGAGGCGACGCCGCGGCACCTCTTCTCCGGCGAAG                    
genomic: CTCAACCCAGGAACAGAGCGAGGCGACGCCGCGGCACCTCTTCT-C--C---Ggtaagtgaga ... ttagg
EST: gi|211239641|gb|FL451454.1|FL451454
EST:     CACCTCAACCCAGGAACAGAGCGAGGCGACGCCGCGGCACCTCTTCTCCG                         GGAAATGGCAACCGTTCCAGGGGATCTGATCTGGCAGGTTGTGAGGAAGAA
genomic: CACCTCAACCCAGGAACAGAGCGAGGCGACGCCGCGGCACCTCTTCTCCGgtaagtgaga ... ttaggcgaagGGAAATGGCAACCGTTCCAGGGGATCTGATCTGGCAGGTTGTGAGGAAGAA
EST: gi|60357910|gb|DN224883.1|DN224883
EST:     CACCTCAACCCAGGAACAGAGCGAGGCGACGCCGCGGCACCTCTTCTCCGGCGAAG                    
genomic: CACCTCAACCCAGGAACAGAGCGAGGCGACGCCGCGGCACCTCTTCT-C--C---Ggtaagtgaga ... ttagg
EST: gi|30306771|gb|CD001444.1|CD001444
EST:     CTCAACCCAGGAACAGAGCGAGGCGACGCCGCGGCACCTCTTCTCCGGCGAAG                    
genomic: CTCAACCCAGGAACAGAGCGAGGCGACGCCGCGGCACCTCTTCT-C--C---Ggtaagtgaga ... ttagg
EST: gi|29946968|gb|CB816416.1|CB816416
EST:     CAGGAACAGAGCGAGGCGACGCCGCGGCACCTCTTCTCCGGCGAAG                    
genomic: CAGGAACAGAGCGAGGCGACGCCGCGGCACCTCTTCT-C--C---Ggtaagtgaga ... ttagg
EST: gi|76937181|gb|DV175072.1|DV175072
EST:     CCTCAACCCAGGAACAGAGCGAGGCGACGCCGCGGCACCTCTTCTCCGGCGAAG                    
genomic: CCTCAACCCAGGAACAGAGCGAGGCGACGCCGCGGCACCTCTTCT-C--C---Ggtaagtgaga ... ttagg
EST: gi|60345472|gb|DN212445.1|DN212445
EST:     GCGAGGCGACGCCGCGGCACCTCTTCTCCGGCGAAG                    
genomic: GCGAGGCGACGCCGCGGCACCTCTTCT-C--C---Ggtaagtgaga ... ttagg
EST: gi|211357907|gb|FL386194.1|FL386194
EST:     CACCTCAACCCAGGAACAGAGCGAGGCGACGCCGCGGCACCTCTTCTCCGGCGAAG                    
genomic: CACCTCAACCCAGGAACAGAGCGAGGCGACGCCGCGGCACCTCTTCT-C--C---Ggtaagtgaga ... ttagg
EST: gi|67024710|gb|CO453459.1|CO453459
EST:     CAACCCAGGTAACCGAGCGAGGCGACGCCGCGGCACCTCTTCTCCGGCGAAG                    
genomic: CAACCCAGG-AACAGAGCGAGGCGACGCCGCGGCACCTCTTCT-C--C---Ggtaagtgaga ... ttagg
EST: gi|5439442|gb|AI820363.1|AI820363
EST:     GAGGCGACGCCGCGGCACCTCTTCTCCGGCGAAG                    
genomic: GAGGCGACGCCGCGGCACCTCTTCT-C--C---Ggtaagtgaga ... ttagg
EST: gi|211227635|gb|FL389646.1|FL389646
EST:     CACCTCAACCCAGGAACAGAGCGAGGCGACGCCGCGGCACCTCTTCTCCGGCGAAG                    
genomic: CACCTCAACCCAGGAACAGAGCGAGGCGACGCCGCGGCACCTCTTCT-C--C---Ggtaagtgaga ... ttagg
EST: gi|211385047|gb|FL404093.1|FL404093
EST:     CACCTCAACCCAGGAACAGAGCGAGGCGACGCCGCGGCACCTCTTCTCCGGCGAAG                    
genomic: CACCTCAACCCAGGAACAGAGCGAGGCGACGCCGCGGCACCTCTTCT-C--C---Ggtaagtgaga ... ttagg
EST: gi|67026694|gb|CO455443.1|CO455443
EST:     CACCCCATCCCAGGAACAGAGCGAGGCGACGCCGCGGCACCTCTTCTCCGGCGAAG                    
genomic: CACCTCAACCCAGGAACAGAGCGAGGCGACGCCGCGGCACCTCTTCT-C--C---Ggtaagtgaga ... ttagg
EST: gi|60396546|gb|DN229415.1|DN229415
EST:     CACCTCAACCCAGGAACAGAGCGAGGCGACGCCGCGGCACCTCTTCTCCGGCGAAG                    
genomic: CACCTCAACCCAGGAACAGAGCGAGGCGACGCCGCGGCACCTCTTCT-C--C---Ggtaagtgaga ... ttagg


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

gtaatgatatacggaatatcacatttggcagttgatattgattatttaggcgaagGGAAATGGCAACCGTTCCAGGGGATCTGATCTGGCAGGTTGTGAGGAAGAACAACTCCTTCCTTGTGAAGCAGTTCGGCAACGGCAATGCCAAGGTGCAG
                                   tattgat  putative branch site (score: 3)
                               ttgatattgattattt  TA-rich tract
















Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
        10        20        30        40        50        60        70        80        90        100       110       120       130       140       150       160       170       180       190       200       210       220 
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
tcaaatgttccgcattagcttgcaacccaaagtcttccgcagatagtaatgatatacggaatatcacatttggcagttgatattgattatttaggcgaagGGAAATGGCAACCGTTCCAGGGGATCTGATCTGGCAGGTTGTGAGGAAGAACAACTCCTTCCTTGTGAAGCAGTTCGGCAACGGCAATGCCAAGGTGCAG

- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -  TGAAGC
- - - - - - - - -gcttgca
- - - - - - - - - - - - acccaaa
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -acatttg
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - gcagttg