1 5' 3' | 2 5' 3' | 3 5' 3' |
...cgcagatagtaatgatatacggaatatcacatttggcagttgatattgattatttaggcgaagggaaatggcaaccgttccaggggatctgatctggcagGTTGTGAGGAAGAACAACTCCTTCCTTGTGAAGCAGTTCGGCAACGGCAATGCCAAGGTGCAGTTCACCAAGGAGCCGAACAACCTCTACAACATCCACT
species | Zea mays |
transcript | GRMZM2G394827_T03 |
intron # | 1 |
splice site | 3' |
intron type | U2 |
EST: CACCTCAACCCAGGAACAGAGCGAGGCGACGCCGCGGCACCTCTTCTCCG GTTGTGAGGAAGAACAACTCCTTCCTTGTGAAGCAGTTCGGCAACGGCAATEST: gi|211308013|gb|FL101160.1|FL101160
genomic: CACCTCAACCCAGGAACAGAGCGAGGCGACGCCGCGGCACCTCTTCTCCGgtaagtgaga ... gatctggcagGTTGTGAGGAAGAACAACTCCTTCCTTGTGAAGCAGTTCGGCAACGGCAAT
EST: CACCTCAACCCAGGAACAGAGCGAGGCGACGCCGCGGCACCTCTTCTCCG GTTGTGAGGAAGAACAACTCCTTCCTTGTGAAGCAGTTCGGCAACGGCAATEST: gi|211305999|gb|FL101159.1|FL101159
genomic: CACCTCAACCCAGGAACAGAGCGAGGCGACGCCGCGGCACCTCTTCTCCGgtaagtgaga ... gatctggcagGTTGTGAGGAAGAACAACTCCTTCCTTGTGAAGCAGTTCGGCAACGGCAAT
EST: CACCTCAACCCAGGAACAGAGCGAGGCGACGCCGCGGCACCTCTTCTCCG GTTGTGAGGAAGAACAACTCCTTCCTTGTGAAGCAGTTCGGCAACGGCAATEST: gi|211305998|gb|FL101158.1|FL101158
genomic: CACCTCAACCCAGGAACAGAGCGAGGCGACGCCGCGGCACCTCTTCTCCGgtaagtgaga ... gatctggcagGTTGTGAGGAAGAACAACTCCTTCCTTGTGAAGCAGTTCGGCAACGGCAAT
EST: ACCTCAACCCAGGAACAGAGCGAGGCGACG-CGCGGGCACCTCTTCTCCG GTTGTGAGGAAGAACAACTCCTTCCTTGTGAAGCAGTTCGGCAACGGCAAT
genomic: ACCTCAACCCAGGAACAGAGCGAGGCGACGCCGC-GGCACCTCTTCTCCGgtaagtgaga ... gatctggcagGTTGTGAGGAAGAACAACTCCTTCCTTGTGAAGCAGTTCGGCAACGGCAAT
ttgattatttaggcgaagggaaatggcaaccgttccaggggatctgatctggcagGTTGTGAGGAAGAACAACTCCTTCCTTGTGAAGCAGTTCGGCAACGGCAATGCCAAGGTGCAGTTCACCAAGGAGCCGAACAACCTCTACAACATCCACT
tattta TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| cgcagatagtaatgatatacggaatatcacatttggcagttgatattgattatttaggcgaagggaaatggcaaccgttccaggggatctgatctggcagGTTGTGAGGAAGAACAACTCCTTCCTTGTGAAGCAGTTCGGCAACGGCAATGCCAAGGTGCAGTTCACCAAGGAGCCGAACAACCTCTACAACATCCACT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGGAG