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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

...gaacccatgctattcagcaaagcataaaccaataacacgactacaagcaaccaagggccaccacaccactaatggttgttacctgctgctgcaacaacagGAGGACACATCAACCCAGCTGTGACCTTCGGGCTGTTCTTGGCCAGGAAGCTGTCCCTGACTAGGGCCATCTTCTACATTATCATGCAATGCCTGGGTGC

Basic information

species Zea mays
transcript GRMZM2G392975_T03
intron # 1
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GRMZM2G392975_T01 (Zea mays), 3'ss of exon 2
lower sequence: LOC_Os02g44630.3 (Oryza sativa), 3'ss of exon 1
-----gaacccatgctattcagcaaagcataaaccaataacacgactacaagcaaccaagggccaccacaccactaatggttgttacct--gctgctgcaacaacagGAGGACACATCAACCCAGCTGTGACCTTCGGGCTGTTCTTGGCCAGGAAGCTGTCCCTGACTAGGGCCATCTTCTACATTATCATGCAATGCCTGGGTGC
        |  |    |     ||   ||     | | || || |||||  ||||  ||||||      || ||||||     |||  |   ||| | |  ||||||||||||||||||||||||| || || || ||||||||||||||||||||||||||||||||  ||||||||||||||||  | ||||||||||| || ||
tatacagtcttacttcaactgtcatgacaactgaccacaaaacaactacg-gcaattaagggc------actactaatatccattatattgtctgttactgcaacagGAGGACACATCAACCCAGCAGTTACTTTTGGGCTGTTCTTGGCCAGGAAGCTGTCCCTGACCCGGGCCATCTTCTACATAGTGATGCAATGCCTAGGGGC

upper sequence: GRMZM2G392975_T01 (Zea mays), 3'ss of exon 2
lower sequence: GLYMA08G01860.1 (Glycine max), 3'ss of exon 1
------------gaacccatgctattcagcaaagcataaaccaata-acacgactacaagcaaccaagggcc----accacaccactaatggttgttacctgctgctgcaacaacagGAGGACACATCAACCCAGCTGTGACCTTCGGGCTGTTCTTGGCCAGGAAGCTGTCCCTGACTAGGGCCATCTTCTACATTATCATGCAATGCCTGGGTGC
                ||||  |||    | | |  | | |  | | |||    |          || ||      || |  |||  |   ||  ||   || || ||      |||| |||||||||||||||||||||||||| || ||||| ||||| |||||||||||||| || |||||  | ||||||||||||||||| || || || ||
gtatacatattttttaccatattatggctcgatgtctgatctgaaacacatttttttttttgtttaaaggttttgaactaagccag-atctgtgtttgtttgttgttgttgttgcagGGGGACACATCAACCCAGCTGTGACCTTTGGTCTGTTTTTGGCAAGGAAGCTGTCCCTAACAAGGGCACTGTTCTACATTATCATGCAGTGTCTTGGAGC

upper sequence: GRMZM2G392975_T01 (Zea mays), 3'ss of exon 2
lower sequence: GLYMA05G37730.1 (Glycine max), 3'ss of exon 1
------------------------------------------gaacccatgctattcagcaaagcataaaccaataacacgactacaagcaaccaagg-gccaccacaccactaa-tggttgttacctgctgctgcaacaacagGAGGACACATCAACCCAGCTGTGACCTTCGGGCTGTTCTTGGCCAGGAAGCTGTCCCTGACTAGGGCCATCTTCTACATTATCATGCAATGCCTGGGTGC
                                            |  |||  | || | ||    |       ||       ||  ||  ||       |     |       || |       | |||    ||      |||| |||||||||||||||||||||||||| || || || ||||| |||||||||||||| || |||||  | ||||||||||||||||| || || || ||
gtacccctccttttccttagaattttaggttgtctttcacttatatacataatttttaccattttacttgtggatgtgggatctgaaacaaatttttttgttgaaaggttttgaactaagccagatctgtgtttgttgtttcagGGGGACACATCAACCCAGCTGTGACCTTTGGTCTCTTTTTGGCAAGGAAGCTGTCCCTCACAAGGGCGCTGTTCTACATTATCATGCAGTGTCTTGGAGC

upper sequence: GRMZM2G392975_T01 (Zea mays), 3'ss of exon 2
lower sequence: Vv02s0025g03390.t01 (Vitis vinifera), 3'ss of exon 1
------------------------------------------------------------------gaacccatgctattcagcaaagcataaaccaataacacgactacaagcaaccaagggccaccacacca-ctaatggttgttacctgctgct-gcaacaacagGAGGACACATCAACCCAGCTGTGACCTTCGGGCTGTTCTTGGCCAGGAAGCTGTCCCTGACTAGGGCCATCTTCTACATTATCATGCAATGCCTGGGTGC
                                                                      | | | | |||  |      ||  |   | |   |  |    ||    |  |        | || || ||||  |||   ||  | | |      ||||||||||||||||||||||||||||||| || ||| |  |||| ||||||||||| || || ||||| || |||||||| || ||||| ||||| |||||
gtgtgcaccactgctcttccttcctcagcctttctttagctttttctgttaaacactttactgggttgctctaagttcttcttcttcctttagccttctgatgtgggtt---gctcttagtgtgttttttagcatctgatggaagttttgtgtggtttgttgtctcagGAGGACACATCAACCCAGCTGTGACCTTTGGTCTGCTACTGGCGAGGAAGCTGTCTCTTACCAGGGCAATTTTCTACATCATAATGCAGTGCCTTGGTGC

upper sequence: GRMZM2G392975_T01 (Zea mays), 3'ss of exon 2
lower sequence: Vv15s0046g02420.t01 (Vitis vinifera), 3'ss of exon 1
gaacccatgctattcagcaaagcataaaccaataacacgactacaagcaaccaagggcca--ccacaccactaatggttgttacctgctgctgcaac--aacagGAGGACACATCAACCCAGCTGTGACCTTCGGGCTGTTCTTGGCCAGGAAGCTGTCCCTGACTAGGGCCATCTTCTACATTATCATGCAATGCCTGGGTGC
   | |||     ||  || |   |     |   |     || ||| || |        |  |        || |     | |  || || ||        ||||||||||||| |||||||| ||||| || || ||| |||||||||| |||||||| || ||  | ||| | |||||||| ||||||||||||||||| ||
---ctcataagcctccacacaattttctagagagagttttctgcaa-catcttgatttgaatctgtgttgatattatcaataatttgttgatgggtttgggcagGAGGACACATAAACCCAGCGGTGACATTTGGCCTGCTCTTGGCCAGAAAGCTGTCTCTAACCCGAGCCGTGTTCTACATGATCATGCAATGCCTGGGCGC

upper sequence: GRMZM2G392975_T01 (Zea mays), 3'ss of exon 2
lower sequence: Vv13s0067g00220.t01 (Vitis vinifera), 3'ss of exon 1
-gaacccatgctattcagcaaagcataaaccaataacacgactacaagcaaccaagggccaccacaccactaatggttgttacctgctgctgcaacaacagGAGGACACATCAACCCAGCTGTGACCTTCGGGCTGTTCTTGGCCAGGAAGCTGTCCCTGACTAGGGCCATCTTCTACATTATCATGCAATGCCTGGGTGC
   |       |  ||   ||| | |    | ||  || |  |  ||  |    |   |    |    ||  |  || ||  |     | ||||      || || || || || ||||| |||||||| |||||||||||||| ||||||||||| ||||| |||||  | | ||||||  | ||||| |||||||||||
gtgatggccttttctcgaaaaaccttttgtctatttcatgtatgtaa-tatgagaattctgtgatgagacggaaagtggtggc-----ggtgca------gGTGGGCATATAAATCCAGCGGTGACCTTTGGGCTGTTCTTGGCAAGGAAGCTGTCGCTGACGAGGGCAGTGTACTACATGGTGATGCAGTGCCTGGGTGC

upper sequence: GRMZM2G392975_T01 (Zea mays), 3'ss of exon 2
lower sequence: Vv15s0046g02410.t01 (Vitis vinifera), 3'ss of exon 1
gaacccatgctattcagcaaagcataaaccaataacacgactacaagcaaccaagggccaccacaccactaatggt--tgttacctgctgctgcaac--aacagGAGGACACATCAACCCAGCTGTGACCTTCGGGCTGTTCTTGGCCAGGAAGCTGTCCCTGACTAGGGCCATCTTCTACATTATCATGCAATGCCTGGGTGC
    |  | ||| |     |    |   || ||| |      |||     | |  |       |  |  |  || |  | | |  || || ||        ||||||| ||||| |||||||| ||||| || |||||| ||||||| || ||||||||||| ||  | ||| | |||||||| |||||||| |||||||||||
---tctgt-ctactttcttacctctttccccatagcctccacacagttttctagagaaagtttcctctgtgttgatcttatcatttgttgatgggtttgggcagGAGGGCACATAAACCCAGCGGTGACATTTGGGCTGCTCTTGGCAAGAAAGCTGTCCCTAACCCGAGCCGTGTTCTACATGATCATGCAGTGCCTGGGTGC

upper sequence: GRMZM2G392975_T01 (Zea mays), 3'ss of exon 2
lower sequence: PP1S305_12V6.1 (Physcomitrella patens), 3'ss of exon 1
----------------------------------gaacccatgctattcagcaaagcataaa--ccaataacacgactacaagcaaccaagggccaccacaccactaa--tggttgttacctgctgctg-caacaacagGAGGACACATCAACCCAGCTGTGACCTTCGGGCTGTTCTTGGCCAGGAAGCTGTCCCTGACTAGGGCCATCTTCTACATTATCATGCAATGCCTGGGTGC
                                    |   ||| | || |    | | |     |||      ||   |     |    ||||    |  |  |  |   ||   |     || || ||    |   ||| |||||||| |||||||||||||| ||||| || |||||||| || ||| || |  |  |  |  |  | || |||||| |    |||||| |||||||
gtaaagaatgcgctgctcatttcacaagtattgcagaatgatgatgtttatgtgatcttggtttccagatcttcgtagatttttatgtgagggtggtctgatgatgagcttgcccggggtttgatgatgatggcttaagGTGGACACATAAACCCAGCTGTGACATTCGGCCTCTTCTTGGCAAGAAAGGTGACATTCCCACGTACAGTATTGTACATTGTGTGTCAATGCTTGGGTGC

upper sequence: GRMZM2G392975_T01 (Zea mays), 3'ss of exon 2
lower sequence: PP1S102_107V6.1 (Physcomitrella patens), 3'ss of exon 1
------------------gaacccatgctattcagcaaagcataaaccaataacacgactacaagcaac-caagggccaccacaccactaatggttgttacctgctgctgcaaca-----acagGAGGACACATCAACCCAGCTGTGACCTTCGGGCTGTTCTTGGCCAGGAAGCTGTCCCTGACTAGGGCCATCTTCTACATTATCATGCAATGCCTGGGTGC
                       ||||   ||    |||   |   | | || || ||  |   ||||  | ||||  ||   | |    || ||  |        || |  |       ||||||||||||||||||||||| ||||| ||||| || ||| |||| || ||| |||| || |   | ||  ||| |||||| |||||||||||| |||||||
gttaaactacctccccttagcagcatgaagttttaaaaaatttctgcaagtatcatgagaagttgcaaaaccagggttacattagctggtatagtgatctaacaaggccgttatgtctctacagGAGGACACATCAACCCAGCCGTGACTTTCGGACTCTTCCTGGCGAGAAAGGTGTCGCTTAACCGTGCACTCTACTACATGATCATGCAATGCTTGGGTGC

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|211491998|gb|FL100854.1|FL100854
EST:     CTTCGGAGGGATGATCTTCGCGCTCGTCTACTGCACCGCCGGCATCTCCG                         GAGGACACATCAACCCAGCTGTGACC
genomic: CTTCGGAGGGATGATCTTCGCGCTCGTCTACTGCACCGCCGGCATCTCCGgtctgtcagc ... gcaacaacagGAGGACACATCAACCCAGCTGTGACC
EST: gi|148936891|gb|EC881041.2|EC881041
EST:     CTTCGGAGGGATGATCTTCGCGCTCGTCTACTGCACCGCCGGCATCTCCG                         GAGGACACATCAACCCAGCTGTGACCTTCGGGCTGTTCTTGGCCAGGAAGC
genomic: CTTCGGAGGGATGATCTTCGCGCTCGTCTACTGCACCGCCGGCATCTCCGgtctgtcagc ... gcaacaacagGAGGACACATCAACCCAGCTGTGACCTTCGGGCTGTTCTTGGCCAGGAAGC
EST: gi|76285262|gb|DV024830.1|DV024830
EST:     CTTCGGAGGGATGATCTTCGCGCTCGTCTACTGCACCGCCGGCATCTCCG                         GAGGACACATCAACCCAGCTGTGACCTTCGGGCTGTTCTTGGCCAGGAAGC
genomic: CTTCGGAGGGATGATCTTCGCGCTCGTCTACTGCACCGCCGGCATCTCCGgtctgtcagc ... gcaacaacagGAGGACACATCAACCCAGCTGTGACCTTCGGGCTGTTCTTGGCCAGGAAGC
EST: gi|149079702|gb|EE168703.2|EE168703
EST:     CTTCGGAGGGATGATCTTCGCGCTCGTCTACTGCACCGCCGGCATCTCCG                         GAGGACACATCAACCCAGCTGTGACCTTCGGGCTGTTCTTGGCCAGGAAGC
genomic: CTTCGGAGGGATGATCTTCGCGCTCGTCTACTGCACCGCCGGCATCTCCGgtctgtcagc ... gcaacaacagGAGGACACATCAACCCAGCTGTGACCTTCGGGCTGTTCTTGGCCAGGAAGC
EST: gi|76923442|gb|DV169489.1|DV169489
EST:     CTTCGGAGGGATGATCTTCGCGCTCGTCTACTGCACCGCCGGCATCTCCG                         GAGGACACATCAACCCAGCTGTGACCTTCGGGCTGTTCTTGGCCAGGAAGC
genomic: CTTCGGAGGGATGATCTTCGCGCTCGTCTACTGCACCGCCGGCATCTCCGgtctgtcagc ... gcaacaacagGAGGACACATCAACCCAGCTGTGACCTTCGGGCTGTTCTTGGCCAGGAAGC
EST: gi|211492001|gb|FL100857.1|FL100857
EST:     CTTCGGAGGGATGATCTTCGCGCTCGTCTACTGCACCGCCGGCATCTCCG                         GAGGACACATCAACCCAGCTGTGACCTTCGGGCTGTTCTTGGGCAGAAAGC
genomic: CTTCGGAGGGATGATCTTCGCGCTCGTCTACTGCACCGCCGGCATCTCCGgtctgtcagc ... gcaacaacagGAGGACACATCAACCCAGCTGTGACCTTCGGGCTGTTCTTGGCCAGGAAGC
EST: gi|149073721|gb|EE162029.2|EE162029
EST:     CTTCGGAGGGATGATCTTCGCGCTCGTCTACTGCACCGCCGGCATCTCCG                         GAGGACACATCAACCCAGCTGTGACCTTCGGGCTGTTCTTGGCCAGGAAGC
genomic: CTTCGGAGGGATGATCTTCGCGCTCGTCTACTGCACCGCCGGCATCTCCGgtctgtcagc ... gcaacaacagGAGGACACATCAACCCAGCTGTGACCTTCGGGCTGTTCTTGGCCAGGAAGC
EST: gi|211486225|gb|FL100819.1|FL100819
EST:     CTTCGGAGGGATGATCTTCGCGCTCGTCTACTGCACCGCCGGCATCTCCG                         GAGGACACATCAACCCAGCTGTGACC
genomic: CTTCGGAGGGATGATCTTCGCGCTCGTCTACTGCACCGCCGGCATCTCCGgtctgtcagc ... gcaacaacagGAGGACACATCAACCCAGCTGTGACC
EST: gi|9794462|gb|BE552770.1|BE552770
EST:     CTTCGGAGGGATGATCTTCGCGCTCGTCTACTGCACCGCCGGCATCTCCG                         GAGGACACATCAACCCAGCTGTGACCTTCGGGCTGTTCTTGGCCAGGAAGC
genomic: CTTCGGAGGGATGATCTTCGCGCTCGTCTACTGCACCGCCGGCATCTCCGgtctgtcagc ... gcaacaacagGAGGACACATCAACCCAGCTGTGACCTTCGGGCTGTTCTTGGCCAGGAAGC
EST: gi|148931929|gb|EC875151.2|EC875151
EST:     CTTCGGAGGGATGATCTTCGCGCTCGTCTACTGCACCGCCGGCATCTCCG                         GAGGACACATCAACCCAGCTGTGACCTTCGGGCTGTTCTTGGCCAGGAAGC
genomic: CTTCGGAGGGATGATCTTCGCGCTCGTCTACTGCACCGCCGGCATCTCCGgtctgtcagc ... gcaacaacagGAGGACACATCAACCCAGCTGTGACCTTCGGGCTGTTCTTGGCCAGGAAGC
EST: gi|149027196|gb|EE046413.2|EE046413
EST:     CTTCGGAGGGATGATCTTCGCGCTCGTCTACTGCACCGCCGGCATCTCCG                         GAGGACACATCAACCCAGCTGTGACCTTCGGGCTGTTCTTGGCCAGGAAGC
genomic: CTTCGGAGGGATGATCTTCGCGCTCGTCTACTGCACCGCCGGCATCTCCGgtctgtcagc ... gcaacaacagGAGGACACATCAACCCAGCTGTGACCTTCGGGCTGTTCTTGGCCAGGAAGC
EST: gi|148969388|gb|EE020180.2|EE020180
EST:     CTTCGGAGGGATGATCTTCGCGCTCGTCTACTGCACCGCCGGCATCTCCG                         GAGGACACATC
genomic: CTTCGGAGGGATGATCTTCGCGCTCGTCTACTGCACCGCCGGCATCTCCGgtctgtcagc ... gcaacaacagGAGGACACATC
EST: gi|78086576|gb|DV514969.1|DV514969
EST:     CTTCGGAGGGATGATCTTCGCGCTCGTCTACTGCACCGCCGGCATCTCCG                         GAGGACACATCAACCCAGCTGTGACCTTCGGGCTGTTCTTGGCCAGGAAGC
genomic: CTTCGGAGGGATGATCTTCGCGCTCGTCTACTGCACCGCCGGCATCTCCGgtctgtcagc ... gcaacaacagGAGGACACATCAACCCAGCTGTGACCTTCGGGCTGTTCTTGGCCAGGAAGC
EST: gi|148942037|gb|EC887032.2|EC887032
EST:     CTTCGGAGGGATGATCTTCGCGCTCGTCTACTGCACCGCCGGCATCTCCG                         GAGGACACATCAACCCAGCTGTGACCTTCGGGCTGTTCTTGGCCAGGAAGC
genomic: CTTCGGAGGGATGATCTTCGCGCTCGTCTACTGCACCGCCGGCATCTCCGgtctgtcagc ... gcaacaacagGAGGACACATCAACCCAGCTGTGACCTTCGGGCTGTTCTTGGCCAGGAAGC
EST: gi|94472445|gb|EB701403.1|EB701403
EST:     CTTCGGAGGGATGATCTTCGCGCTCGTCTACTGCACCGCCGGCATCTCCG                         GAGGACACATCAACCCAGCTGTGACCTTCGGGCTGTTCTTGGCCAGGAAGC
genomic: CTTCGGAGGGATGATCTTCGCGCTCGTCTACTGCACCGCCGGCATCTCCGgtctgtcagc ... gcaacaacagGAGGACACATCAACCCAGCTGTGACCTTCGGGCTGTTCTTGGCCAGGAAGC
EST: gi|211489110|gb|FL100837.1|FL100837
EST:     CTTCGGAGGGATGATCTTCGCGCTCGTCTACTGCACCGCCGGCATCTCCG                         GAGGACACATCAACCCAGCTGTGACCTTCGGGCTGTTCTTGGCCAGGAAGC
genomic: CTTCGGAGGGATGATCTTCGCGCTCGTCTACTGCACCGCCGGCATCTCCGgtctgtcagc ... gcaacaacagGAGGACACATCAACCCAGCTGTGACCTTCGGGCTGTTCTTGGCCAGGAAGC
EST: gi|211492002|gb|FL100858.1|FL100858
EST:     CTTCGGAGGGATGATCTTCGCGCTCGTCTACTGCACCGCCGGCATCTCCA                         GAGGACACATCAACCCAGCTGTGACCTTCGGGCTGTTCTTGGCCAGGAAGC
genomic: CTTCGGAGGGATGATCTTCGCGCTCGTCTACTGCACCGCCGGCATCTCCGgtctgtcagc ... gcaacaacagGAGGACACATCAACCCAGCTGTGACCTTCGGGCTGTTCTTGGCCAGGAAGC
EST: gi|71330068|gb|DR801773.1|DR801773
EST:     CTTCGGAGGGATGATCTTCGCGCTCGTCTACTGCACCGCCGGCATCTCCG                         GAGGACACATCAACCCAGCTGTGACCTTCGGGCTGTTCTTGGCCAGGAAGC
genomic: CTTCGGAGGGATGATCTTCGCGCTCGTCTACTGCACCGCCGGCATCTCCGgtctgtcagc ... gcaacaacagGAGGACACATCAACCCAGCTGTGACCTTCGGGCTGTTCTTGGCCAGGAAGC
EST: gi|211489119|gb|FL100846.1|FL100846
EST:     CTTCGGAGGGATGATCTTCGCGCTCGTCTACTGCACCGCCGGCATCTCCG                         GAGGACACATCAACCCAGCTGTGACCTTCGGGCTGTTCTTGGCCAGGAAGC
genomic: CTTCGGAGGGATGATCTTCGCGCTCGTCTACTGCACCGCCGGCATCTCCGgtctgtcagc ... gcaacaacagGAGGACACATCAACCCAGCTGTGACCTTCGGGCTGTTCTTGGCCAGGAAGC
EST: gi|149099303|gb|EE185339.2|EE185339
EST:     CTTCGGAGGGATGATCTTCGCGCTCGTCTACTGCACCGCCGGCATCTCCG                         GAGGACACATCAACCCAGCTGTGACCTTCGGGCTGTTCTTGGCCAGGAAGC
genomic: CTTCGGAGGGATGATCTTCGCGCTCGTCTACTGCACCGCCGGCATCTCCGgtctgtcagc ... gcaacaacagGAGGACACATCAACCCAGCTGTGACCTTCGGGCTGTTCTTGGCCAGGAAGC
EST: gi|71444238|gb|DR825288.1|DR825288
EST:     CTTCGGAGGGATGATCTTCGCGCTCGTCTACTGCACCGCCGGCATCTCCG                         GAGGACACATCAACCCAGCTGTGACCTTCGGGCTGTTCTTGGCCAGGAAGC
genomic: CTTCGGAGGGATGATCTTCGCGCTCGTCTACTGCACCGCCGGCATCTCCGgtctgtcagc ... gcaacaacagGAGGACACATCAACCCAGCTGTGACCTTCGGGCTGTTCTTGGCCAGGAAGC
EST: gi|5268802|gb|AI770766.1|AI770766
EST:     CTTCGGAGGGATGATCTTCGCGCTCGNCTACTGCACCGNCGGCATCTNCG                         GAGGACACATCAACCCAGCTGTGACCTTCGGGCTGNTCTTGGCCAGGAAGC
genomic: CTTCGGAGGGATGATCTTCGCGCTCGTCTACTGCACCGCCGGCATCTCCGgtctgtcagc ... gcaacaacagGAGGACACATCAACCCAGCTGTGACCTTCGGGCTGTTCTTGGCCAGGAAGC
EST: gi|71435834|gb|DR816884.1|DR816884
EST:     CTTCGGAGGGATGATCTTCGCGCTCGTCTACTGCACCGCCGGCATCTCCG                         GAGGACACATCAACCCAGCTGTGACCTTCGGGCTGTTCTTGGCCAGGAAGC
genomic: CTTCGGAGGGATGATCTTCGCGCTCGTCTACTGCACCGCCGGCATCTCCGgtctgtcagc ... gcaacaacagGAGGACACATCAACCCAGCTGTGACCTTCGGGCTGTTCTTGGCCAGGAAGC
EST: gi|149111018|gb|EE294517.2|EE294517
EST:     CTTCGGAGGGATGATCTTCGCGCTCGTCTACTGCACCGCCGGCATCTCCG                         GAGGACACATCAACCCAGCTGTGACCTTCGGGCTGTTCTTGGCCAGGAAGC
genomic: CTTCGGAGGGATGATCTTCGCGCTCGTCTACTGCACCGCCGGCATCTCCGgtctgtcagc ... gcaacaacagGAGGACACATCAACCCAGCTGTGACCTTCGGGCTGTTCTTGGCCAGGAAGC
EST: gi|211492005|gb|FL100861.1|FL100861
EST:     CTTCGGAGGGATGATCTTCGCGCTCGTCTACTGCACCGCCGGCATCTCCG                         GAGGACACATCAACCCAGCTGTGACCTTCGGGCTGTTCTTGGCCAGGAAGC
genomic: CTTCGGAGGGATGATCTTCGCGCTCGTCTACTGCACCGCCGGCATCTCCGgtctgtcagc ... gcaacaacagGAGGACACATCAACCCAGCTGTGACCTTCGGGCTGTTCTTGGCCAGGAAGC
EST: gi|31350056|gb|CD434413.1|CD434413
EST:     CTTCGGAGGGATGATCTTCGCGCTCGTCTACTGCACCGCCGGCATCTCCG                         GAGGACACATCAACCCAGCTGTGACCTTCGGGCTGTTCTTGGCCAGGAAGC
genomic: CTTCGGAGGGATGATCTTCGCGCTCGTCTACTGCACCGCCGGCATCTCCGgtctgtcagc ... gcaacaacagGAGGACACATCAACCCAGCTGTGACCTTCGGGCTGTTCTTGGCCAGGAAGC
EST: gi|148999413|gb|EE036363.2|EE036363
EST:     CTTCGGAGGGATGATCTTCGCGCTCGTCTACTGCACCGCCGGCATCTCCG                         GAGGACACATCAACCCAGCTGTGACCTTCGGGCTGTTCTTGGCCAGGAAGC
genomic: CTTCGGAGGGATGATCTTCGCGCTCGTCTACTGCACCGCCGGCATCTCCGgtctgtcagc ... gcaacaacagGAGGACACATCAACCCAGCTGTGACCTTCGGGCTGTTCTTGGCCAGGAAGC
EST: gi|50335967|gb|CO531093.1|CO531093
EST:     CTTCGGAGGGATGATCTTCGCGCTCGTCTACTGCACCGCCGGCATCTCCG                         GAGGACACATCAACCCAGCTGTGACCTTCGGGCTGTTCTTGGCCAGGAAGC
genomic: CTTCGGAGGGATGATCTTCGCGCTCGTCTACTGCACCGCCGGCATCTCCGgtctgtcagc ... gcaacaacagGAGGACACATCAACCCAGCTGTGACCTTCGGGCTGTTCTTGGCCAGGAAGC
EST: gi|76012460|gb|DT939630.1|DT939630
EST:     CTTCGGAGGGATGATCTTCGCGCTCGTCTACTGCACCGCCGGCATCTCCG                         GAGGACACATCAACCCAGCTGTGACCTTCGGGCTGTTCTTGGCCAGGAAGC
genomic: CTTCGGAGGGATGATCTTCGCGCTCGTCTACTGCACCGCCGGCATCTCCGgtctgtcagc ... gcaacaacagGAGGACACATCAACCCAGCTGTGACCTTCGGGCTGTTCTTGGCCAGGAAGC
EST: gi|211491997|gb|FL100853.1|FL100853
EST:     TCGGAGGGATGATCTTTCGCGCTCGTCTACTGCACCGCCCGGCATCTCCG                         GAGGACACATCAACCCAGCTGTGACCTTCG
genomic: TCGGAGGGATGATCTT-CGCGCTCGTCTACTGCACCGCC-GGCATCTCCGgtctgtcagc ... gcaacaacagGAGGACACATCAACCCAGCTGTGACCTTCG
EST: gi|148936470|gb|EC880575.2|EC880575
EST:     CTTCGGAGGGATGATCTTCGCGCTCGTCTACTGCACCGCCGGCATCTCCG                         GAGGACACATCAACCCAGCTGTGACCTTCGGGCTGTTCTTGGCCAGGAAGC
genomic: CTTCGGAGGGATGATCTTCGCGCTCGTCTACTGCACCGCCGGCATCTCCGgtctgtcagc ... gcaacaacagGAGGACACATCAACCCAGCTGTGACCTTCGGGCTGTTCTTGGCCAGGAAGC
EST: gi|71434061|gb|DR815111.1|DR815111
EST:     TCGGAGGGATGATCTTCGCGCTTCGTCTACTGCACCCGCCGGCATCTCCG                         GAGGACACATCAACCCAGCTGTGACCTTCGGGCTGTTCTTGGCCAGGAAAG
genomic: TCGGAGGGATGATCTTCGCGCT-CGTCTACTGCACC-GCCGGCATCTCCGgtctgtcagc ... gcaacaacagGAGGACACATCAACCCAGCTGTGACCTTCGGGCTGTTCTTGGCCAGGAA-G


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

agcaaccaagggccaccacaccactaatggttgttacctgctgctgcaacaacagGAGGACACATCAACCCAGCTGTGACCTTCGGGCTGTTCTTGGCCAGGAAGCTGTCCCTGACTAGGGCCATCTTCTACATTATCATGCAATGCCTGGGTGC
                     cactaat  putative branch site (score: 2)