Sequence
atgc intronic sequence ATGC exonic sequence...tgggcagtactgactgacggtggtgctaactggttgtaaatcctcaaacttttgaggtcttgttttcatgaccaagttgaactattgaactggttttcagGTGAACACTGACGACCTTGTGTTTGGAGGCTGGGACATCAGCATCATGAACTTGGCAGATGCCATGACCAGGGCCAAGGTGCTGGACATTGACCTACAGA
Basic information
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: GRMZM2G392513_T02 (Zea mays), 3'ss of exon 1
lower sequence: LOC_Os03g09250.2 (Oryza sativa), 3'ss of exon 3
-----tgggcagtactgactga-cggtggtgctaactggttgtaaatcctcaaacttttgaggtcttgttttcatgaccaagttgaactattgaactggttttcagGTGAACACTGACGACCTTGTGTTTGGAGGCTGGGACATCAGCATCATGAACTTGGCAGATGCCATGACCAGGGCCAAGGTGCTGGACATTGACCTACAGA
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atctttggacaat---gattgatctgttgaatacatccacaaatagttttcagatttgcagaacctgtttttccgttttctgatgg-ttatgaaaaaaatt--cagGTGAACCCTGATGACCTTGTGTTCGGGGGCTGGGACATTAGCAACATGAACCTGGCTGATGCTATGACCAGGGCAAAGGTACTTGACATTGATCTGCAGA
upper sequence: GRMZM2G392513_T02 (Zea mays), 3'ss of exon 1
lower sequence: GLYMA05G31450.2 (Glycine max), 3'ss of exon 3
tgggcagtactgac-tgacggtggtgc-taactggttgtaaatcctcaa-----acttttgaggtcttgttttcatgaccaagttgaactattgaactggttttcagGTGAACACTGACGACCTTGTGTTTGGAGGCTGGGACATCAGCATCATGAACTTGGCAGATGCCATGACCAGGGCCAAGGTGCTGGACATTGACCTACAGA
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-ggacatgagtgacatgttgaaaacatataattactattaaattaattatacttactttttgaaccatgccataaacacgagtcttaattaatt------tatgcagGTAAACCCTGATGATGTTGTGTTTGGGGGATGGGATATCAGTAACTTGAACCTGGCAGATGCCATGGCCAGGGCCAAGGTGTTTGATATCGACCTGCAGA
upper sequence: GRMZM2G392513_T02 (Zea mays), 3'ss of exon 1
lower sequence: GLYMA08G14670.3 (Glycine max), 3'ss of exon 2
tgggcagtactgac-tgacggtggtgctaactggttg---taaatcctcaaacttttgaggtcttgttttcatgaccaagttgaactattgaactggtttt-cagGTGAACACTGACGACCTTGTGTTTGGAGGCTGGGACATCAGCATCATGAACTTGGCAGATGCCATGACCAGGGCCAAGGTGCTGGACATTGACCTACAGA
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--ataatttctaacatgctgaaaacataaaattcttaaattaactatacttagtttctgaaccatg---ccataattaaacacgagtcttaattaatttatgcagGTGAACCCTGATGATGTTGTGTTTGGGGGATGGGATATCAGTAACTTGAACCTGGCTGATGCCATGGCCAGGGCCAAGGTGTTTGATATCGACCTGCAGA
upper sequence: GRMZM2G392513_T02 (Zea mays), 3'ss of exon 1
lower sequence: Vv07s0031g00920.t01 (Vitis vinifera), 3'ss of exon 3
tgggcagtactgactgacggtggtgctaactggttgtaaatcctcaaacttttgaggtcttgttttcatgaccaagttgaactattgaactggttttcagGTGAACACTGACGACCTTGTGTTTGGAGGCTGGGACATCAGCATCATGAACTTGGCAGATGCCATGACCAGGGCCAAGGTGCTGGACATTGACCTACAGA
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-gtaagttagtaactcaatttcattgaaaatatttgcatgtgtggaaagcatt-atttgatttatttatagtatgatataatttatattataatgatcagGTGAACCCAGATGACATTGTTTTTGGGGGATGGGACATCAGTGACATGAACCTGGCAGATGCAATGGCCAGGGCTAAGGTCCTGGACATTGATCTGCAGA atgc intronic sequence ATGC exonic sequenceIntronic sequence truncated to 55 bases.aaacttttgaggtcttgttttcatgaccaagttgaactattgaactggttttcagGTGAACACTGACGACCTTGTGTTTGGAGGCTGGGACATCAGCATCATGAACTTGGCAGATGCCATGACCAGGGCCAAGGTGCTGGACATTGACCTACAGA
ttttc CT-rich tract
ttgtttt TA-rich tract
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
tgggcagtactgactgacggtggtgctaactggttgtaaatcctcaaacttttgaggtcttgttttcatgaccaagttgaactattgaactggttttcagGTGAACACTGACGACCTTGTGTTTGGAGGCTGGGACATCAGCATCATGAACTTGGCAGATGCCATGACCAGGGCCAAGGTGCTGGACATTGACCTACAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCAGAT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CAGATG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCTGGA
- -gcagtac
- - - - - - - - - -gtggtgc
- - - - - - - - - - - - - - -ctggttg