1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' | 12 5' 3' | 13 5' 3' | 14 5' 3' | 15 5' 3' |
...atattaccataaattttcaaactattactatactttgaacccccccccccccttatcatttctgtcttaacactctaacctcacttgtttcactttacagATTTGAGGAAGTTGCCTTCAGCTTTAATGGTGGGAAGGATTCAACT
species | Zea mays |
transcript | GRMZM2G381933_T03 |
intron # | 1 |
splice site | 3' |
intron type | U2 |
EST: AAGTACAGCAACGCCGTCTACGTCGTCCAGCGGGCCTTCGCGCTCTACCC ATTTGAGGAAGTNNGCCT-CAGCTTTAATGGTGGGAAAGATTCAACTGTGCEST: gi|211136283|gb|FL006475.1|FL006475
genomic: AAGTACAGCAACGCCGTCTACGTCGTCCAGCGGGCCTTCGCGCTCTACCCgtaagcttcc ... cactttacagATTTGAGGAAGTT-GCCTTCAGCTTTAATGGTGGGAAGGATTCAACTGTGC
EST: AAGTACAGCAACGCCGTCTACGTCGTCCAGCGGGCCTTCGCGCTCTACCC ATTTGAGGAAGTTGCCTTCAGCTTTAATGGTGGGAAGGATTCAACTEST: gi|211136285|gb|FL006477.1|FL006477
genomic: AAGTACAGCAACGCCGTCTACGTCGTCCAGCGGGCCTTCGCGCTCTACCCgtaagcttcc ... cactttacagATTTGAGGAAGTTGCCTTCAGCTTTAATGGTGGGAAGGATTCAACT
EST: AAGTACAGCAACGCCGTCTACGTCGTCCAGCGGGCCTTCGCGCTCTACCC ATTTGAGGAAGTTGCCTTCAGCTTTAATGGTGGGAAGGATTCAACTEST: gi|6536592|gb|AW224905.1|AW224905
genomic: AAGTACAGCAACGCCGTCTACGTCGTCCAGCGGGCCTTCGCGCTCTACCCgtaagcttcc ... cactttacagATTTGAGGAAGTTGCCTTCAGCTTTAATGGTGGGAAGGATTCAACT
EST: AAGTACAGCAACGCCGTCTACGTCGTCCAGCGGGCCTTCGCGCTCTACCC ATTTGAGGAAGTTGCCTTCAGCTTTAATGGTGGGAAGGATTCAACTEST: gi|211136284|gb|FL006476.1|FL006476
genomic: AAGTACAGCAACGCCGTCTACGTCGTCCAGCGGGCCTTCGCGCTCTACCCgtaagcttcc ... cactttacagATTTGAGGAAGTTGCCTTCAGCTTTAATGGTGGGAAGGATTCAACT
EST: AAGTACAGCAACGCCGTCTACGTCGTCCAGCGGGCCTTCGCGCTCTACCC ATTTGAGGAAGTTGCCTTCAGCTTTAATGGTGGGAAGGATTCAACTEST: gi|74242522|gb|DT650436.1|DT650436
genomic: AAGTACAGCAACGCCGTCTACGTCGTCCAGCGGGCCTTCGCGCTCTACCCgtaagcttcc ... cactttacagATTTGAGGAAGTTGCCTTCAGCTTTAATGGTGGGAAGGATTCAACT
EST: AAGTACAGCAACGCCGTCTACGTCGTCCAGCGGGCCTTCGCGCTCTACCC ATTTGAGGAAGTTGCCTTCAGCTTTAATGGTGGGAAGGATTCAACTEST: gi|31353159|gb|CD437516.1|CD437516
genomic: AAGTACAGCAACGCCGTCTACGTCGTCCAGCGGGCCTTCGCGCTCTACCCgtaagcttcc ... cactttacagATTTGAGGAAGTTGCCTTCAGCTTTAATGGTGGGAAGGATTCAACT
EST: AAGTACAGCAACGCCGTCTACGTCGTCCAGCGGGCCTTCGCGCTCTACCC ATTTGAGGAAGTTGCCTTCAGCTTTAATGGTGGGAAGGATTCAACTEST: gi|211136280|gb|FL006472.1|FL006472
genomic: AAGTACAGCAACGCCGTCTACGTCGTCCAGCGGGCCTTCGCGCTCTACCCgtaagcttcc ... cactttacagATTTGAGGAAGTTGCCTTCAGCTTTAATGGTGGGAAGGATTCAACT
EST: AAGTACAGCAACGCCGTCTACGTCGTCCAGCGGGCCTTCGCGCTCTACCC ATTTGAGGAAGTTGCCTTCAGCTTTAATGGTGGGAAGGATTCAACTEST: gi|211135349|gb|FL006468.1|FL006468
genomic: AAGTACAGCAACGCCGTCTACGTCGTCCAGCGGGCCTTCGCGCTCTACCCgtaagcttcc ... cactttacagATTTGAGGAAGTTGCCTTCAGCTTTAATGGTGGGAAGGATTCAACT
EST: AAGTACAGCAACGCCGTCTACGTCGTCCAGCGGGCCTTCGCGCTCTACCC ATTTGAGGAAGTTGCCTTCAGCTTTAATGGTGGGAAGGATTCAACTEST: gi|211135352|gb|FL006471.1|FL006471
genomic: AAGTACAGCAACGCCGTCTACGTCGTCCAGCGGGCCTTCGCGCTCTACCCgtaagcttcc ... cactttacagATTTGAGGAAGTTGCCTTCAGCTTTAATGGTGGGAAGGATTCAACT
EST: AAGTACAGCAACGCCGTCTACGTCGTCCAGCGGGCCTTCGCGCTCTACCC ATTTGAGGAAGTTGCCTTCAGCTTTAATGGTGGGAAGGATTCAACT
genomic: AAGTACAGCAACGCCGTCTACGTCGTCCAGCGGGCCTTCGCGCTCTACCCgtaagcttcc ... cactttacagATTTGAGGAAGTTGCCTTCAGCTTTAATGGTGGGAAGGATTCAACT
cccccccttatcatttctgtcttaacactctaacctcacttgtttcactttacagATTTGAGGAAGTTGCCTTCAGCTTTAATGGTGGGAAGGATTCAACT
tttcacttt CT-rich tract
ttatcattt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| atattaccataaattttcaaactattactatactttgaacccccccccccccttatcatttctgtcttaacactctaacctcacttgtttcactttacagATTTGAGGAAGTTGCCTTCAGCTTTAATGGTGGGAAGGATTCAACT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TCAGCT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGGTGG