1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' | 12 5' 3' | 13 5' 3' | 14 5' 3' | 15 5' 3' | 16 5' 3' | 17 5' 3' | 18 5' 3' |
...ttgcctttaatgcataacctattttgatgacaacatgttgtgtcatggtgtcagatgctaacaagccatggtatattattgttttttcatctttctctagGTTCGAATTAACAGATTTCTGGAGAAGACAAGGAAGAAAAACAACAAAGAGATGGAAAATGAAGAAGAAGCTGGTGACACAAACATTGCTATAGAACAAC
species | Zea mays |
transcript | GRMZM2G381395_T01 |
intron # | 1 |
splice site | 3' |
intron type | U2 |
EST: TTCGAGTCATCCAGGCCGCGTGCCAGATTGGCGAGGCAATTGAACACGAG GTTCGAATTAACAGATTTCTGGAGAAGEST: gi|19821839|gb|BQ047863.1|BQ047863
genomic: TTCGAGTCATCCAGGCCGCGTGCCAGATTGGCGAGGCAATTGAACACGAGgtgtgtgaat ... ctttctctagGTTCGAATTAACAGATTTCTGGAGAAG
EST: TTCGAGTCATCCAGGCCGCGTGCCAGATTGGCGAGGCAATTGAACACGAG GTTCGAATTAACAGATTTCTGGAGAAGEST: gi|18963749|gb|BM660608.1|BM660608
genomic: TTCGAGTCATCCAGGCCGCGTGCCAGATTGGCGAGGCAATTGAACACGAGgtgtgtgaat ... ctttctctagGTTCGAATTAACAGATTTCTGGAGAAG
EST: TTCGAGTCATCCAGGCCGCGTGCCAGATTGGCGAGGCAATTGAACACGAG GTTCGAATTAACAGATTTCTGGAGAAGEST: gi|87153997|gb|DY398786.1|DY398786
genomic: TTCGAGTCATCCAGGCCGCGTGCCAGATTGGCGAGGCAATTGAACACGAGgtgtgtgaat ... ctttctctagGTTCGAATTAACAGATTTCTGGAGAAG
EST: TTCGAGTCATCCAGGCCGCGTGCCAGATTGGCGAGGCAATTGAACACGAG GTTCGAATTAACAGATTTCTGGAGAAGEST: gi|20300200|gb|BQ163143.1|BQ163143
genomic: TTCGAGTCATCCAGGCCGCGTGCCAGATTGGCGAGGCAATTGAACACGAGgtgtgtgaat ... ctttctctagGTTCGAATTAACAGATTTCTGGAGAAG
EST: TTCGAGTCATCCAGGCCGCGTGCCAGATTGGCGAGGCAATTGAACAC-AG GTTCGAATTAACAGATTTCTGGAGAAG
genomic: TTCGAGTCATCCAGGCCGCGTGCCAGATTGGCGAGGCAATTGAACACGAGgtgtgtgaat ... ctttctctagGTTCGAATTAACAGATTTCTGGAGAAG
tggtgtcagatgctaacaagccatggtatattattgttttttcatctttctctagGTTCGAATTAACAGATTTCTGGAGAAGACAAGGAAGAAAAACAACAAAGAGATGGAAAATGAAGAAGAAGCTGGTGACACAAACATTGCTATAGAACAAC
tgctaac putative branch site (score: 99)
ttattgttttttcatc putative PPT
tatattattgtttttt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| ttgcctttaatgcataacctattttgatgacaacatgttgtgtcatggtgtcagatgctaacaagccatggtatattattgttttttcatctttctctagGTTCGAATTAACAGATTTCTGGAGAAGACAAGGAAGAAAAACAACAAAGAGATGGAAAATGAAGAAGAAGCTGGTGACACAAACATTGCTATAGAACAAC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GATGGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGAAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGAAGC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGCTG
-tgccttt
- - - - -atgcata
- - - - - - - - - - - tttgatg
- - - - - - - - - - - - - - - - - atgttgt
- - - - - - - - - - - - - - - - - - - - - -catggtg
- - - - - - - - - - - - - - - - - - - - - - - - - -cagatgc
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - gccatgg