Skip to another splice site:
1  
 5'  3'   		2  
 5'  3'   		3  
 5'  3'   

Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtgaagggaatttctgttccaaagttcttacgaaatatttatgaatgctgcagtgtgatggtggactaattgtagtgcgtaactgtttgcagCCAATCAAGGAGTCTGCTCTAGGGAACATCCCGACCATTGCCTTCTGCGACACTGACTCTCCGATGCGGTATGTCGATATCGGCATCCCTGCCAACAACA

Basic information

species Zea mays
transcript GRMZM2G380152_T01
intron # 1
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GRMZM2G380152_T01 (Zea mays), 3'ss of exon 1
lower sequence: LOC_Os03g08440.1 (Oryza sativa), 3'ss of exon 2
gtgaagggaatttctgttccaaagttcttacgaaatatttatgaatgctgcagtgtgatggtggactaattgtagtgcgtaactgtttgcagCCAATCAAGGAGTCTGCTCTAGGGAACATCCCGACCATTGCCTTCTGCGACACTGACTCTCCGATGCGGTATGTCGATATCGGCATCCCTGCCAACAACA
|||||    ||  |  |  ||  ||  |       |   | ||  | | | | |||  |  ||  |   || |  ||  | | ||| ||||||||||||||||||||||||| || ||||||||||||||||||||||| ||||| || || || |||||||||||||||||||||||||| ||||||||||
gtgaaaatgatcaccatgtcacggtagtgcgttggtgaat-tgggtacagtattgtt-tactgatcgtgttatcctgaatta-tgtctgcagCCAATCAAGGAGTCTGCTCTGGGAAACATCCCGACCATTGCCTTCTGTGACACCGATTCCCCAATGCGGTATGTCGATATCGGCATCCCGGCCAACAACA

upper sequence: GRMZM2G380152_T01 (Zea mays), 3'ss of exon 1
lower sequence: GLYMA08G17000.1 (Glycine max), 3'ss of exon 2
-------------------------------------------------------------------------------------gtgaagggaatttctgttccaaagttcttacgaaa--------tatttatgaatgc-tgcagtgtgatggtggactaattgtagtgcgtaactgtttgcagCCAATCAAGGAGTCTGCTCTAGGGAACATCCCGACCATTGCCTTCTGCGACACTGACTCTCCGATGCGGTATGTCGATATCGGCATCCCTGCCAACAACA
                                                                                     ||     ||   |  |||  ||| |||| ||   |        | ||| |   ||| ||   ||  ||| |   |   || |  |    |  | | ||||||| ||||||||   |||||| || || || || || ||||| || || |||||||| ||||| ||||||||||| ||| |||| ||||||||||| || |
gttattacccctttagaagttataaccagagagtattaaaggtgttttcaggagttatattgttcaacttttaaccgtcaaggatgtttgttgagggttggtttgaaatttctgacagtaactgatcttgtttttttgtgcctgtcctgccatgatttgcc--ttatgttattgatttttgtgcagCCTATCAAGGAAGGTGCTCTTGGAAATATTCCAACTATTGCTTTTTGTGACACTGATTCTCCAATGCGGTATGTTGATGTCGGGATCCCTGCCAATAATA

upper sequence: GRMZM2G380152_T01 (Zea mays), 3'ss of exon 1
lower sequence: GLYMA15G42150.1 (Glycine max), 3'ss of exon 2
-------------------------------------------------------------------------------------gtgaagggaatttctgttccaaagttcttacgaaatatttatgaatgctgcagtgtgatggtgg----actaattgtagtgcgtaactgttt-----gcagCCAATCAAGGAGTCTGCTCTAGGGAACATCCCGACCATTGCCTTCTGCGACACTGACTCTCCGATGCGGTATGTCGATATCGGCATCCCTGCCAACAACA
                                                                                     ||     || | |  |||  ||| || | ||  | || |||    || |    ||||   ||      || | ||||  |  || | || ||     |||||| |||||||||  |||||| || || || || || ||||| || ||||||||||| ||||| ||||||||||| ||| | || || |||||||| || |
gttattacccctttagaagttagaaccagagagtatttaaggtgttttcaggagttatatagttcaactcttcaccgtcaaggatgtttgttgagtgttggtttgaaatttgtgac--agtaattaaccttgttattttgtgtctgtcttgccacaatttgtcttatgttattgatttgtgtgcagCCTATCAAGGAGGGTGCTCTTGGAAATATTCCAACTATTGCTTTTTGCGACACTGATTCTCCAATGCGGTATGTTGATGTTGGGATTCCTGCCAATAATA

upper sequence: GRMZM2G380152_T01 (Zea mays), 3'ss of exon 1
lower sequence: GLYMA16G01460.1 (Glycine max), 3'ss of exon 2
---------------------------------------------------------------gtgaagggaatttctgttccaaagttcttacgaaatatttatgaatgctgcagtgtgatggtgg-actaattgtagt-gcgtaactgtttgcagCCAATCAAGGAGTCTGCTCTAGGGAACATCCCGACCATTGCCTTCTGCGACACTGACTCTCCGATGCGGTATGTCGATATCGGCATCCCTGCCAACAACA
                                                               ||  |    |||| ||||    |  |  |  |   |  || ||       | ||||  || ||  | |   |||  | |      ||| ||||||| || |||||  ||||||| ||||| || || |||||||| ||||| |||||||| || || ||| ||||||| || || || || |||||||||||||
gtggatacccaaatcagcttcaaatgatatatttgattttagttacttgtgctttgattgattgttgacatgatttatgttatgtatgttgtttgcggttgttgtggtgttgactgtgttgtgttgttaatgtgtgtgtttgttcgtttgtgtgcagCCTATTAAGGAAGCTGCTCTTGGGAATATTCCCACCATTGCTTTCTGTGACACTGATTCGCCTATGAGGTATGTGGACATTGGAATTCCTGCCAACAACA

upper sequence: GRMZM2G380152_T01 (Zea mays), 3'ss of exon 1
lower sequence: Vv09s0002g00610.t01 (Vitis vinifera), 3'ss of exon 2
-------gtgaagggaatttctgttc-caaagttcttacgaaatatttatgaatgctgcagtgtgatggtgg-actaattgtagtgcgtaactgtttgcagCCAATCAAGGAGTCTGCTCTAGGGAACATCCCGACCATTGCCTTCTGCGACACTGACTCTCCGATGCGGTATGTCGATATCGGCATCCCTGCCAACAACA
       ||  |   ||||| | ||   | |||   |  |      |||||| |  |  |||       |   ||| ||  |      ||||||||| ||||| || |||||  |||| ||||| ||||| || || ||||| ||||| |||||||| || || ||||||||||| || || || ||||| ||||| ||||
tattttggttcatctaatttatctttgtatagtgtatgagtttgtgttatgagttatttagtccaggatttttacttatcatcaca-ataactgttttcagCCTATTAAGGAAGCTGCACTAGGAAACATTCCAACTATTGCTTTCTGTGACACTGATTCCCCAATGCGGTATGTTGACATTGGTATCCCAGCCAATAACA


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

tttatgaatgctgcagtgtgatggtggactaattgtagtgcgtaactgtttgcagCCAATCAAGGAGTCTGCTCTAGGGAACATCCCGACCATTGCCTTCTGCGACACTGACTCTCCGATGCGGTATGTCGATATCGGCATCCCTGCCAACAACA
                             taattgta  TA-rich tract