Skip to another splice site:
1  
 5'  3'   		2  
 5'  3'   		3  
 5'  3'   		4  
 5'  3'   

Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtacaggagcttttgtaataagatcatattaattatcaatcacagtatttcccttattcaaatgttcgcattgctttcagGTGTAGCGTTTGGTGTCGCTTGCCTGTGATCACACCCTGTCGACATCTTTTGTGCCTTGACTGTGTAGCTCTTGATAGTGAAAAATGCACATTACCAGGT

Basic information

species Zea mays
transcript GRMZM2G379804_T01
intron # 1
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GRMZM2G379804_T01 (Zea mays), 3'ss of exon 1
lower sequence: LOC_Os01g72310.1 (Oryza sativa), 3'ss of exon 2
gtacaggagcttttgtaataagatcatattaattatcaatcacagt----atttcccttattcaaatgttcgcattgct---ttcagGTGTAGCGTTTGGTGTCGCTTGCCTGTGATCACACCCTGTCGACATCTTTTGTGCCTTGACTGTGTAGCTCTTGATAGTGAAAAATGCACATTACCAGGT
|||    || |||    | ||    ||||  | |||| |||||  |    |||| ||||| | |||| | |  ||||||   |||||||| || | |||||| |||||||||||  |||| |||||||| ||||| ||||||||||| |||||||||||||||||||| |||||||| ||||| || 
gtatgaaaggtttaaacaaaaatatatatgtaatatccatcactttgatgattttccttaataaaatttccttattgctatattcagGTGCAGAGATTGGTGCCGCTTGCCTGTTGTCACGCCCTGTCGGCATCTGTTGTGCCTTGATTGTGTAGCTCTTGATAGTGAGAAATGCACGTTACCTGGC

upper sequence: GRMZM2G379804_T01 (Zea mays), 3'ss of exon 1
lower sequence: AT3G54460.1 (Arabidopsis thaliana), 3'ss of exon 2
--gtacaggagcttttgtaataagatcatattaat-tatcaatcaca-gtatttccctta--ttcaaatgttcgcattgctttcagGTGTAGCGTTTGGTGTCGCTTGCCTGTGATCACACCCTGTCGACATCTTTTGTGCCTTGACTGTGTAGCTCTTGATAGTGAAAAATGCACATTACCAGGT
   ||    |  |    |  |   || |  ||     ||    |||| |||| |   ||   ||    |  ||   ||      || ||| | |  ||||| ||  | ||||| ||||| || ||| |||| || ||||||||||| ||||| ||||||||||| ||||  || ||  |  | |||
gtatatcttaaatccaatgttttcattagtttggggcatttgccacaagtatctaatttcgcttttgcttctcatcttataaatagATGTGGGGAATGGTGCCGACTTCCTGTTATCACTCCATGTAGACACCTGTTGTGCCTTGATTGTGTTGCTCTTGATAGCGAAAGGTGTACTATTTCTGGT


















 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

atattaattatcaatcacagtatttcccttattcaaatgttcgcattgctttcagGTGTAGCGTTTGGTGTCGCTTGCCTGTGATCACACCCTGTCGACATCTTTTGTGCCTTGACTGTGTAGCTCTTGATAGTGAAAAATGCACATTACCAGGT
 tattaat  putative branch site (score: 2)
                                             ttgctttc  putative PPT
     aattatcaat  TA-rich tract