Sequence
atgc intronic sequence ATGC exonic sequence...tgaatatcccttttaaaggttctattaaagtgtggtcagctgcaaagtctgaaaggttccgttaaagtgtgatcagctcatgactgttttcttgctgtagGTTGTTCACCAGTGGCCCGGTTTGCCTAAAGGTGTAAAATTTGATCCTTCTGACCAGGAATTAATCTGGCACTTAATGGCAAAACATGGAAAATCTGGAA
Basic information
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: GRMZM2G027309_T02 (Zea mays), 3'ss of exon 1
lower sequence: GLYMA01G22510.1 (Glycine max), 3'ss of exon 2
----tgaatatcccttttaaaggttc---tattaaagtgtggtcagctgcaaagtctgaaaggttccgttaaagtgtgatcagctcatgactgttttcttgctgtagGTTGTTCACCAGTGGCCCGGTTTGCCTAAAGGTGTAAAATTTGATCCTTCTGACCAGGAATTAATCTGGCACTTAATGGCAAAACATGGAAAATCTGGAA
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ataatgaaggtatgattaaaactttcatcctttaaatcatga--agtctagcagttgtataggt---ataaatgtacggacatttga--acttttttttgtcaatagGTAGCACAAGAGTGGCCTGGCTTACCAAAAGGTGTCAAATTTGATCCATCTGATCAGGAAATAATTTGGCACTTGCTTGCAAAAGTTGGGGTAGGAGATT
upper sequence: GRMZM2G027309_T02 (Zea mays), 3'ss of exon 1
lower sequence: GLYMA02G11140.1 (Glycine max), 3'ss of exon 2
-----tgaatatcccttttaaaggttctattaaagtgtggtcagctgcaaagtctgaaaggttccgttaaagtgtgatcagctcatgactgttttcttgctgtagGTTGTTCACCAGTGGCCCGGTTTGCCTAAAGGTGTAAAATTTGATCCTTCTGACCAGGAATTAATCTGGCACTTAATGGCAAAACATGGAAAATCTGGAA
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agagttatggttaaaaataaaaaacataatgaaggtatgattaaaactttcatcctttaaatcc---taaagtctagc--atttgaactttttttctgatgatagGTAGCACAAGAGTGGCCTGGCTTGCCAAAAGGTGTCAAATTTGATCCATCTGATCAGGAGATCATTTGGCACTTGCTTGCAAAAGTTGGGGTAGGAGATT atgc intronic sequence ATGC exonic sequenceIntronic sequence truncated to 55 bases.agtctgaaaggttccgttaaagtgtgatcagctcatgactgttttcttgctgtagGTTGTTCACCAGTGGCCCGGTTTGCCTAAAGGTGTAAAATTTGATCCTTCTGACCAGGAATTAATCTGGCACTTAATGGCAAAACATGGAAAATCTGGAA
ctgttttctt CT-rich tract
ttaaagt TA-rich tract
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
tgaatatcccttttaaaggttctattaaagtgtggtcagctgcaaagtctgaaaggttccgttaaagtgtgatcagctcatgactgttttcttgctgtagGTTGTTCACCAGTGGCCCGGTTTGCCTAAAGGTGTAAAATTTGATCCTTCTGACCAGGAATTAATCTGGCACTTAATGGCAAAACATGGAAAATCTGGAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CATGGA