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 5'  3'   		2  
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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtaaacccaactcccttcctctctccccaccatttcgcccctaatctgaactacacgccgcgtgtccagAGGAGCCGCTGCTGGTGCGCGCGGCGCGGGGCGAGGACGGCCTCCCACGCCCACCCGCGTGGATGATGCGACAGGCAGGGCGGTACATGGCGGAGTACCA

Basic information

species Zea mays
transcript GRMZM2G377609_T03
intron # 1
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GRMZM2G377609_T03 (Zea mays), 3'ss of exon 1
lower sequence: LOC_Os01g43390.1 (Oryza sativa), 3'ss of exon 1
--------------------gtaaacccaactcccttcctct--ctccccaccatttcgcccctaatctgaactacac--------gccgcgtgtccagAGGAGCCGCTGCTGGTGCGCGCGGCGCGGGGCGAGGACGGCCTCCCACGCCCACCCGCGTGGATGATGCGACAGGCAGGGCGGTACATGGCGGAGTACCA
                    || |   |     |  |||||    |  || ||||||   ||||||||||| || ||          |||| |||||||||||||||||||||||||| |||||| ||||||||||||| || || || || || |||||||||||||| ||||| |||||||||||||||||||||||
gtaaaaccaaccgccctgctgttactactctctctctcctccagttttcctccattttcgccctaatctgacctgcatctgggcctcccgcatgtccagAGGAGCCGCTGCTGGTGCGGGCGGCGAGGGGCGAGGACGGGCTGCCGCGGCCGCCGGCGTGGATGATGCGGCAGGCCGGGCGGTACATGGCGGAGTACCA
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|78111205|gb|DV529602.1|DV529602
EST:     CCGCCTTCCTGCCATTTCCGCATCCCTTTCGCCGTCCCCTTCCTCTTCGG                         AGGAGCCGCTGCTGGTGCGCGCGGCGCGGGGCGAGGACGGCCTCCCACGCC
genomic: CCGCCTTCCTGCCATTTCCGCATCCCTTTCGCCGTCCCCTTCCTCTTCGGgtaaacccaa ... gcgtgtccagAGGAGCCGCTGCTGGTGCGCGCGGCGCGGGGCGAGGACGGCCTCCCACGCC
EST: gi|211448707|gb|FL094691.1|FL094691
EST:     CCGCCTTCCTGCCATTTCCGCATCCCTTTCGCCGTCCCCTTCCTCTTCGG                         AGGAGCCGCTGCTGGTGCGCGCGGCGCGGGGCGAGGACGGCCTCCCACGCC
genomic: CCGCCTTCCTGCCATTTCCGCATCCCTTTCGCCGTCCCCTTCCTCTTCGGgtaaacccaa ... gcgtgtccagAGGAGCCGCTGCTGGTGCGCGCGGCGCGGGGCGAGGACGGCCTCCCACGCC
EST: gi|211448706|gb|FL094690.1|FL094690
EST:     CCGCCTTCCTGCCATTTCCGCATCCCTTTCGCCGTCCCCTTCCTCTTCGG                         AGGAGCCGCTGCTGGTGCGCGCGGCGCGGGGCGAGGACGGCCTCCCACGCC
genomic: CCGCCTTCCTGCCATTTCCGCATCCCTTTCGCCGTCCCCTTCCTCTTCGGgtaaacccaa ... gcgtgtccagAGGAGCCGCTGCTGGTGCGCGCGGCGCGGGGCGAGGACGGCCTCCCACGCC
EST: gi|211446589|gb|FL094685.1|FL094685
EST:     CCGCCTTCCTGCCATTTCCGCATCCCTTTCGCCGTCCCCTTCCTCTTCGG                         AGGAGCCGCTGCTGGTGCGCGCGGCGCGGGGCGAGGACGGCCTCCCACGCC
genomic: CCGCCTTCCTGCCATTTCCGCATCCCTTTCGCCGTCCCCTTCCTCTTCGGgtaaacccaa ... gcgtgtccagAGGAGCCGCTGCTGGTGCGCGCGGCGCGGGGCGAGGACGGCCTCCCACGCC
EST: gi|31360028|gb|CD444385.1|CD444385
EST:     CCGCCTTCCTGCCATTTCCGCATCCCTTTCGCCGTCCCCTTCCTCTTCGG                         AGGAGCCGCTGCTGGTGCGCGCGGCGCGGGGCGAGGACGGCCTCCCACGCC
genomic: CCGCCTTCCTGCCATTTCCGCATCCCTTTCGCCGTCCCCTTCCTCTTCGGgtaaacccaa ... gcgtgtccagAGGAGCCGCTGCTGGTGCGCGCGGCGCGGGGCGAGGACGGCCTCCCACGCC
EST: gi|211448705|gb|FL094689.1|FL094689
EST:     CCGCCTTCCTGCCATTTCCGCATCCCTTTCGCCGTCCCCTTCCTCTTCGG                         AGGAGCCGCTGCTGGTGCGCGCGGCGCGGGGCGAGGACGGCCTCCCACGCC
genomic: CCGCCTTCCTGCCATTTCCGCATCCCTTTCGCCGTCCCCTTCCTCTTCGGgtaaacccaa ... gcgtgtccagAGGAGCCGCTGCTGGTGCGCGCGGCGCGGGGCGAGGACGGCCTCCCACGCC
EST: gi|31358130|gb|CD442487.1|CD442487
EST:     CCGCCTTCCTGCCATTTCCGCATCCCTTTCGCCGTCCCCTTCCTCTTCGG                         AGGAGCCGCTGCTGGTGCGCGCGGCGCGGGGCGAGGACGGCCTCCCACGCC
genomic: CCGCCTTCCTGCCATTTCCGCATCCCTTTCGCCGTCCCCTTCCTCTTCGGgtaaacccaa ... gcgtgtccagAGGAGCCGCTGCTGGTGCGCGCGGCGCGGGGCGAGGACGGCCTCCCACGCC
EST: gi|211446588|gb|FL094684.1|FL094684
EST:     CCGCCTTCCTGCCATTTCCGCATCCCTTTCGCCGTCCCCTTCCTCTTCGG                         AGGAGCCGCTGCTGGTGCGCGCGGCGCGGGGCGAGGACGGCCTCCCACGCC
genomic: CCGCCTTCCTGCCATTTCCGCATCCCTTTCGCCGTCCCCTTCCTCTTCGGgtaaacccaa ... gcgtgtccagAGGAGCCGCTGCTGGTGCGCGCGGCGCGGGGCGAGGACGGCCTCCCACGCC
EST: gi|211446592|gb|FL094688.1|FL094688
EST:     CCGCCTTCCTGCCATTTCCGCATCCCTTTCGCCGTCCCCTTCCTCTTCGG                         AGGAGCCGCTGCTGGTGCGCGCGGCGCGGGGCGAGGACGGCCTCCCACGCC
genomic: CCGCCTTCCTGCCATTTCCGCATCCCTTTCGCCGTCCCCTTCCTCTTCGGgtaaacccaa ... gcgtgtccagAGGAGCCGCTGCTGGTGCGCGCGGCGCGGGGCGAGGACGGCCTCCCACGCC
EST: gi|211446590|gb|FL094686.1|FL094686
EST:     CCGCCTTCCTGCCATTTCCGCATCCCTTTCGCCGTCCCCTTCCTCTTCGG                         AGGAGCCGCTGCTGGTGCGCGCGGCGCGGGGCGAGGACGGCCTCCCACGCC
genomic: CCGCCTTCCTGCCATTTCCGCATCCCTTTCGCCGTCCCCTTCCTCTTCGGgtaaacccaa ... gcgtgtccagAGGAGCCGCTGCTGGTGCGCGCGGCGCGGGGCGAGGACGGCCTCCCACGCC


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

cttcctctctccccaccatttcgcccctaatctgaactacacgccgcgtgtccagAGGAGCCGCTGCTGGTGCGCGCGGCGCGGGGCGAGGACGGCCTCCCACGCCCACCCGCGTGGATGATGCGACAGGCAGGGCGGTACATGGCGGAGTACCA
                        ccctaat  putative branch site (score: 3)