1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' | 12 5' 3' | 13 5' 3' | 14 5' 3' | 15 5' 3' | 16 5' 3' | 17 5' 3' | 18 5' 3' | 19 5' 3' | 20 5' 3' |
21 5' 3' | 22 5' 3' | 23 5' 3' | 24 5' 3' | 25 5' 3' | 26 5' 3' | 27 5' 3' | 28 5' 3' |
...ggagcaaaattatcttccggtatgactatgcttgtaggtccagctatttttttcttcgacatatctgacatgcatttactttttttttgttttgtaccagGGGAAATCAATTGAAGTTAGACAGGCAGCTGGTCTACTACTGAAAAACAATCTGCGAACGACTTTCATCTCTATGCAACCTTCGTCCCAGCATTATGTTA
species | Zea mays |
transcript | GRMZM2G376731_T01 |
intron # | 1 |
splice site | 3' |
intron type | U2 |
EST: AGTTCCCCGACTTCAATAATTACCTAACCTTCATCCTGGCCCGCGGAGAG GGGAAATCAATTGAAGTTAGACAGGCAGCTGGTCTACTACTGAAAAACAATEST: gi|32807540|gb|CD959774.1|CD959774
genomic: AGTTCCCCGACTTCAATAATTACCTAACCTTCATCCTGGCCCGCGGAGAGgtgagccttc ... tttgtaccagGGGAAATCAATTGAAGTTAGACAGGCAGCTGGTCTACTACTGAAAAACAAT
EST: AGTTCCCCGACTTCAACAATTATCTAACCTTCATCCTGGCCCGCGGAGAG GGGAAATCAATTGAAGTTAGACAGGCAGCTGGTCTACTACTGAAAAACAATEST: gi|91056195|gb|EB166613.1|EB166613
genomic: AGTTCCCCGACTTCAATAATTACCTAACCTTCATCCTGGCCCGCGGAGAGgtgagccttc ... tttgtaccagGGGAAATCAATTGAAGTTAGACAGGCAGCTGGTCTACTACTGAAAAACAAT
EST: AGTTCCCCGACTTCAATAATTACCTAACCTTCATCCTGGCCCGCGGAGAG GGGAAATCAATTGAAGTTAGACAGGCAGCTGGTCTACTACTGAAAAACAATEST: gi|30306833|gb|CD001506.1|CD001506
genomic: AGTTCCCCGACTTCAATAATTACCTAACCTTCATCCTGGCCCGCGGAGAGgtgagccttc ... tttgtaccagGGGAAATCAATTGAAGTTAGACAGGCAGCTGGTCTACTACTGAAAAACAAT
EST: AGTTCCCCGACTTCAATAATTACCTAACCTTCATCCTGGCCCGCGGAGAG GGGAAATCAATTGAAGTTAGACAGGCAGCTGGTCTACTACTGAAAAACAAT
genomic: AGTTCCCCGACTTCAATAATTACCTAACCTTCATCCTGGCCCGCGGAGAGgtgagccttc ... tttgtaccagGGGAAATCAATTGAAGTTAGACAGGCAGCTGGTCTACTACTGAAAAACAAT
atttttttcttcgacatatctgacatgcatttactttttttttgttttgtaccagGGGAAATCAATTGAAGTTAGACAGGCAGCTGGTCTACTACTGAAAAACAATCTGCGAACGACTTTCATCTCTATGCAACCTTCGTCCCAGCATTATGTTA
atctgac putative branch site (score: 61)
catttacttttttttt putative PPT
atttactttttttttg TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| ggagcaaaattatcttccggtatgactatgcttgtaggtccagctatttttttcttcgacatatctgacatgcatttactttttttttgttttgtaccagGGGAAATCAATTGAAGTTAGACAGGCAGCTGGTCTACTACTGAAAAACAATCTGCGAACGACTTTCATCTCTATGCAACCTTCGTCCCAGCATTATGTTA
- agcaaaa
- - - - - - - - - - - - - - tgcttgt
- - - - - - - - - - - - - - - - - - - tccagct
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -tgacatg