1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' |
...tgcttttgctcctgtttctgccaaataaatttcattattaagctgatgtattctttattttaaatttggccaagtgctaacatttcctgctccaactcagGAATGTATGTAGCCAACCGTGCTTCAGACAAGATTACCCAATTGACAGACAATGTGTACGTTTGTCGCTCTGGATCT
species | Zea mays |
transcript | GRMZM2G374881_T02 |
intron # | 1 |
splice site | 3' |
intron type | U2 |
EST: CTGCTACGAGGGTGGCGTCGTCCTCGGCGCTGATTCCAGAACCAGCACTG GAATGTATGTAGCCAACCGTGCTTCAGACAAGATTACCCAATTGACAGACAEST: gi|211272373|gb|FK988497.1|FK988497
genomic: CTGCTACGAGGGTGGCGTCGTCCTCGGCGCTGATTCCAGAACCAGCACTGgtacgccctt ... tccaactcagGAATGTATGTAGCCAACCGTGCTTCAGACAAGATTACCCAATTGACAGACA
EST: CTGCTACGAGGGTGGCGTCGTCCTCGGCGCTGATTCCAGAACCAGCACTG GAATGTATGTAGCCAACCGTGCTTCAGACAAGATTACCCAATTGACAGACAEST: gi|211274173|gb|FK988503.1|FK988503
genomic: CTGCTACGAGGGTGGCGTCGTCCTCGGCGCTGATTCCAGAACCAGCACTGgtacgccctt ... tccaactcagGAATGTATGTAGCCAACCGTGCTTCAGACAAGATTACCCAATTGACAGACA
EST: CTGCTACGAGGGTGGCGTCGTCCTCGGCGCTGATTCCAGAACCAGCACTG GAATGTATGTAGCCAACCGTGCTTCAGACAAGATTACCCAATTGACAGACAEST: gi|50338298|gb|CO533424.1|CO533424
genomic: CTGCTACGAGGGTGGCGTCGTCCTCGGCGCTGATTCCAGAACCAGCACTGgtacgccctt ... tccaactcagGAATGTATGTAGCCAACCGTGCTTCAGACAAGATTACCCAATTGACAGACA
EST: CTGCTACGAGGGTGGCGTCGTCCTCGGCGCTGATTCCAGAACCAGCACTG GAATGTATGTAGCCAACCGTGCTTCAGACAAGATTACCCAATTGACAGACAEST: gi|211274171|gb|FK988501.1|FK988501
genomic: CTGCTACGAGGGTGGCGTCGTCCTCGGCGCTGATTCCAGAACCAGCACTGgtacgccctt ... tccaactcagGAATGTATGTAGCCAACCGTGCTTCAGACAAGATTACCCAATTGACAGACA
EST: CTGCTACGAGGGTGGCGTCGTCCTCGGCGCTGATTCCAGAACCAGCACTG GAATGTATGTAGCCAACCGTGCTTCAGACAAGATTACCCAATTGACAGACAEST: gi|211274176|gb|FK988506.1|FK988506
genomic: CTGCTACGAGGGTGGCGTCGTCCTCGGCGCTGATTCCAGAACCAGCACTGgtacgccctt ... tccaactcagGAATGTATGTAGCCAACCGTGCTTCAGACAAGATTACCCAATTGACAGACA
EST: CTGCTACGAGGGTGGCGTCGTCCTCGGCGCTGATTCCAGAACCAGCACTG GAATGTATGTAGCCAACCGTGCTTCAGACAAGATTACCCAATTGACAGACAEST: gi|78109399|gb|DV527815.1|DV527815
genomic: CTGCTACGAGGGTGGCGTCGTCCTCGGCGCTGATTCCAGAACCAGCACTGgtacgccctt ... tccaactcagGAATGTATGTAGCCAACCGTGCTTCAGACAAGATTACCCAATTGACAGACA
EST: CTGCTACGAGGGTGGCGTCGTCCTCGGCGCTGATTCCAGAACCAGCACTG GAATGTATGTAGCCAACCGTGCTTCAGACAAGATTACCCAATTGACAGACAEST: gi|91049302|gb|EB159720.1|EB159720
genomic: CTGCTACGAGGGTGGCGTCGTCCTCGGCGCTGATTCCAGAACCAGCACTGgtacgccctt ... tccaactcagGAATGTATGTAGCCAACCGTGCTTCAGACAAGATTACCCAATTGACAGACA
EST: CTGCTACGAGGGTGGCGTCGTCCTCGGCGCTGATTCCAGAACCAGCACTG GAATGTATGTAGCCAACCGTGCTTCAGACAAGATTACCCAATTGACAGACAEST: gi|211272372|gb|FK988496.1|FK988496
genomic: CTGCTACGAGGGTGGCGTCGTCCTCGGCGCTGATTCCAGAACCAGCACTGgtacgccctt ... tccaactcagGAATGTATGTAGCCAACCGTGCTTCAGACAAGATTACCCAATTGACAGACA
EST: TGCTACGAGGGGTGGCGTCGTCCTCGGCGCTGATTCCAGAACCAGCACTG GAATGTATGTAGCCAACCGTGCTTCAGACAAGATTACCCAATTGACAGACAEST: gi|211274179|gb|FK988509.1|FK988509
genomic: TGCTACGA-GGGTGGCGTCGTCCTCGGCGCTGATTCCAGAACCAGCACTGgtacgccctt ... tccaactcagGAATGTATGTAGCCAACCGTGCTTCAGACAAGATTACCCAATTGACAGACA
EST: CTGCTACGAGGGTGGCGTCGTCCTCGGCGCTGATTCCAGAACCAGCACTG GAATGTATGTAGCCAACCGTGCTTCAGACAAGATTACCCAATTGACAGACAEST: gi|20803190|gb|BQ294240.1|BQ294240
genomic: CTGCTACGAGGGTGGCGTCGTCCTCGGCGCTGATTCCAGAACCAGCACTGgtacgccctt ... tccaactcagGAATGTATGTAGCCAACCGTGCTTCAGACAAGATTACCCAATTGACAGACA
EST: CTGCTACGAGGGTGGCGTCGTCCTCGGCGCTGATTCCAGGACCAGCACTG GAATGTATGTAGCCAACCGTGCTTCAGACAAGATTACCCAATTGACAGACAEST: gi|76915113|gb|DV165828.1|DV165828
genomic: CTGCTACGAGGGTGGCGTCGTCCTCGGCGCTGATTCCAGAACCAGCACTGgtacgccctt ... tccaactcagGAATGTATGTAGCCAACCGTGCTTCAGACAAGATTACCCAATTGACAGACA
EST: CTGCTACGAGGGTGGCGTCGTCCTCGGCGCTGATTCCAGAACCAGCACTG GAATGTATGTAGCCAACCGTGCTTCAGACAAGATTACCCAATTGACAGACAEST: gi|211272370|gb|FK988494.1|FK988494
genomic: CTGCTACGAGGGTGGCGTCGTCCTCGGCGCTGATTCCAGAACCAGCACTGgtacgccctt ... tccaactcagGAATGTATGTAGCCAACCGTGCTTCAGACAAGATTACCCAATTGACAGACA
EST: CTGCTACGAGGGTGGCGTCGTCCTCGGCGCTGATTCCAGAACCAGCACTG GAATGTATGTAGCCAACCGTGCTTCAGACAAGATTACCCAATTGACAGACAEST: gi|211274172|gb|FK988502.1|FK988502
genomic: CTGCTACGAGGGTGGCGTCGTCCTCGGCGCTGATTCCAGAACCAGCACTGgtacgccctt ... tccaactcagGAATGTATGTAGCCAACCGTGCTTCAGACAAGATTACCCAATTGACAGACA
EST: CTGCTACGAGGGTGGCGTCGTCCTCGGCGCTGATTCCAGAACCAGCACTG GAATGTATGTAGCCAACCGTGCTTCAGACAAGATTACCCAATTGACAGACAEST: gi|91872633|gb|EB402590.1|EB402590
genomic: CTGCTACGAGGGTGGCGTCGTCCTCGGCGCTGATTCCAGAACCAGCACTGgtacgccctt ... tccaactcagGAATGTATGTAGCCAACCGTGCTTCAGACAAGATTACCCAATTGACAGACA
EST: TCCAGAACCAGCACTG GAATGTATGTAGCCAACCGTGCTTCAGACAAGATTACCCAATTGACAGACAEST: gi|211272369|gb|FK988493.1|FK988493
genomic: TCCAGAACCAGCACTGgtacgccctt ... tccaactcagGAATGTATGTAGCCAACCGTGCTTCAGACAAGATTACCCAATTGACAGACA
EST: CTGCTACGAGGGTGGCGTCGTCCTCGGCGCTGATTCCAGAACCAGCACTG GAATGTATGTAGCCAACCGTGCTTCAGACAAGATTACCCAATTGACAGACAEST: gi|211274170|gb|FK988500.1|FK988500
genomic: CTGCTACGAGGGTGGCGTCGTCCTCGGCGCTGATTCCAGAACCAGCACTGgtacgccctt ... tccaactcagGAATGTATGTAGCCAACCGTGCTTCAGACAAGATTACCCAATTGACAGACA
EST: CTGCTACGAGGGTGGCGTCGTCCTCGGCGCTGATTCCAGAACCAGCACTG GAATGTATGTAGCCAACCGTGCTTCAGACAAGATTACCCAATTGACAGACAEST: gi|211274174|gb|FK988504.1|FK988504
genomic: CTGCTACGAGGGTGGCGTCGTCCTCGGCGCTGATTCCAGAACCAGCACTGgtacgccctt ... tccaactcagGAATGTATGTAGCCAACCGTGCTTCAGACAAGATTACCCAATTGACAGACA
EST: CTGCTACGAGGGTGGCGTCGTCCTCGGCGCTGATTCCAGAACCAGCACTG GAATGTATGTAGCCAACCGTGCTTCAGACAAGATTACCCAATTGACAGACAEST: gi|148967409|gb|EE018635.2|EE018635
genomic: CTGCTACGAGGGTGGCGTCGTCCTCGGCGCTGATTCCAGAACCAGCACTGgtacgccctt ... tccaactcagGAATGTATGTAGCCAACCGTGCTTCAGACAAGATTACCCAATTGACAGACA
EST: CTGCTACGAGGGTGGCGTCGTCCTCGGCGCTGATTCCAGAACCAGCACTG GAATGTATGTAGCCAACCGTGCTTCAGACAAGATTACCCAATTGACAGACA
genomic: CTGCTACGAGGGTGGCGTCGTCCTCGGCGCTGATTCCAGAACCAGCACTGgtacgccctt ... tccaactcagGAATGTATGTAGCCAACCGTGCTTCAGACAAGATTACCCAATTGACAGACA
atgtattctttattttaaatttggccaagtgctaacatttcctgctccaactcagGAATGTATGTAGCCAACCGTGCTTCAGACAAGATTACCCAATTGACAGACAATGTGTACGTTTGTCGCTCTGGATCT
tgctaac putative branch site (score: 262)
tttcctgctcc CT-rich tract
ttctttattttaaatt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| tgcttttgctcctgtttctgccaaataaatttcattattaagctgatgtattctttattttaaatttggccaagtgctaacatttcctgctccaactcagGAATGTATGTAGCCAACCGTGCTTCAGACAAGATTACCCAATTGACAGACAATGTGTACGTTTGTCGCTCTGGATCT
tgctttt
- - - -gctcctg
- - - - - - - -ttctgcc
- - - - - - - - - - - aaataaa
- - - - - - - - - - - - - - -tttcatt
- - - - - - - - - - - - - - - - - - - - -gctgatg
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - caagtgc
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -ttcctgc