1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' |
...gtgcggatggcgatgggagcgacggttcgcgcagcggtcgcagacgccatggtgacgttcttatgggtgctatgagcctccgtgcttggtgtctccacagCAGCTATCACGTCGTACCAGGGGCGTAGGAGGGCGCTAGCCACTATGCGCTTCTCGTCACCACGTCCCTCCTCTCGGTGCTCCTCTTCACCTTCGACCTC
species | Zea mays |
transcript | GRMZM2G373447_T01 |
intron # | 1 |
splice site | 3' |
intron type | U2 |
gccatggtgacgttcttatgggtgctatgagcctccgtgcttggtgtctccacagCAGCTATCACGTCGTACCAGGGGCGTAGGAGGGCGCTAGCCACTATGCGCTTCTCGTCACCACGTCCCTCCTCTCGGTGCTCCTCTTCACCTTCGACCTC
tgtctcc CT-rich tract
ttcttat TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtgcggatggcgatgggagcgacggttcgcgcagcggtcgcagacgccatggtgacgttcttatgggtgctatgagcctccgtgcttggtgtctccacagCAGCTATCACGTCGTACCAGGGGCGTAGGAGGGCGCTAGCCACTATGCGCTTCTCGTCACCACGTCCCTCCTCTCGGTGCTCCTCTTCACCTTCGACCTC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CTCCTC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CTCCTC
- gcggatg
- - - - - - - - - - - - - - - gcagcgg
- - - - - - - - - - - - - - - - - - - - - - -gccatgg
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -ggtgcta
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - tgcttgg