1 5' 3' | 2 5' 3' | 3 5' 3' |
...tctgtggccgtgtgatcttacgggcagtttgtctcctttttttttgggcgatgtgatcttcttgtgttttattactgattagtcggcttgaatcttgcagGTTGAAGCCGCTCGATTTGCTCACCAGAAATTCAGATTTTCGAGTGGAATTCGCTTAATATAGCAATGCACTAGGGTTTACTGTGCACCACTAGGCTACT
species | Zea mays |
transcript | GRMZM2G369912_T01 |
intron # | 1 |
splice site | 3' |
intron type | U2 |
EST: CCGGCGCGGGTGGAGATCCGTTCGCTTTGGATCGACTTCTTCGTGTTTGG GTTGAAGCCGCTCGATTTGCTCACCAGAAATTCAGATTTTCGAGTGGAATTEST: gi|148949382|gb|EC894838.2|EC894838
genomic: CCGGCGCGGGTGGAGATCCGTTCGCTTTGGATCGACTTCTTCGTGTTTGGgtagggacct ... aatcttgcagGTTGAAGCCGCTCGATTTGCTCACCAGAAATTCAGATTTTCGAGTGGAATT
EST: CCGGCGCGGGTGGAGATCCGTTCGCTTTGGATCGACTTCTTCGTGTTTGG GTTGAAGCCGCTCGATTTGCTCACCAGAAATTCAGATTTTCGAGTGGAATTEST: gi|89247732|gb|DY619518.1|DY619518
genomic: CCGGCGCGGGTGGAGATCCGTTCGCTTTGGATCGACTTCTTCGTGTTTGGgtagggacct ... aatcttgcagGTTGAAGCCGCTCGATTTGCTCACCAGAAATTCAGATTTTCGAGTGGAATT
EST: CCGGCGCGGGTGGAGATCCGTTCGCTTTGGATCGACTTCTTCGGGTTTGG GTTGAAGCCGCTCGATTTGCTCACCAGAAATTCAGATTTTCGAGGGGAATTEST: gi|211135523|gb|FL473207.1|FL473207
genomic: CCGGCGCGGGTGGAGATCCGTTCGCTTTGGATCGACTTCTTCGTGTTTGGgtagggacct ... aatcttgcagGTTGAAGCCGCTCGATTTGCTCACCAGAAATTCAGATTTTCGAGTGGAATT
EST: CCGGCGCGGGTGGAGATCCGTTCGCTTTGGATCGACTTCTTCGTGTTTGG GTTGAAGCCGCTCGATTTGCTCACCAGAAATTCAGATTTTCGAGTGGAATTEST: gi|211249121|gb|FL249376.1|FL249376
genomic: CCGGCGCGGGTGGAGATCCGTTCGCTTTGGATCGACTTCTTCGTGTTTGGgtagggacct ... aatcttgcagGTTGAAGCCGCTCGATTTGCTCACCAGAAATTCAGATTTTCGAGTGGAATT
EST: CCGGCGCGGGTGGAGATCCGTTCGCTTTGGATCGACTTCTTCGTGTTTGG GTTGAAGCCGCTCGATTTGCTCACCAGAAATTCAGATTTTCGAGTGGAATTEST: gi|149089423|gb|EE178663.2|EE178663
genomic: CCGGCGCGGGTGGAGATCCGTTCGCTTTGGATCGACTTCTTCGTGTTTGGgtagggacct ... aatcttgcagGTTGAAGCCGCTCGATTTGCTCACCAGAAATTCAGATTTTCGAGTGGAATT
EST: CCGGCGCGGGTGGAGATCCGTTCGCTTTGGATCGACTTCTTCGTGTTTGG GTTGAAGCCGCTCGATTTGCTCACCAGAAATTCAGATTTTCGAGTGGAATTEST: gi|211249124|gb|FL249379.1|FL249379
genomic: CCGGCGCGGGTGGAGATCCGTTCGCTTTGGATCGACTTCTTCGTGTTTGGgtagggacct ... aatcttgcagGTTGAAGCCGCTCGATTTGCTCACCAGAAATTCAGATTTTCGAGTGGAATT
EST: CGGCGCGGNGTGGAGATCCGTTCGCTTTGGATCGACTTCTTCGTGTTTGG GTTGAAGCCGCTCGATTTGCTCACCAGAAATTCAGATTTTCGAGTGGAATTEST: gi|148965284|gb|EE016088.2|EE016088
genomic: CGGCGCGG-GTGGAGATCCGTTCGCTTTGGATCGACTTCTTCGTGTTTGGgtagggacct ... aatcttgcagGTTGAAGCCGCTCGATTTGCTCACCAGAAATTCAGATTTTCGAGTGGAATT
EST: CCGGCGCGGGTGGAGATCCGTTCGCTTTGGATCGACTTCTTCGTGTTTGG GTTGAAGCCGCTCGATTTGCTCACCAGAAATTCAGATTTTCGAGTGGAATTEST: gi|149020748|gb|EE045749.2|EE045749
genomic: CCGGCGCGGGTGGAGATCCGTTCGCTTTGGATCGACTTCTTCGTGTTTGGgtagggacct ... aatcttgcagGTTGAAGCCGCTCGATTTGCTCACCAGAAATTCAGATTTTCGAGTGGAATT
EST: CCGGCGCGGGTGGAGATCCGTTCGCTTTGGATCGACTTCTTCGTGTTTGG GTTGAAGCCGCTCGATTTGCTCACCAGAAATTCAGATTTTCGAGTGGAATT
genomic: CCGGCGCGGGTGGAGATCCGTTCGCTTTGGATCGACTTCTTCGTGTTTGGgtagggacct ... aatcttgcagGTTGAAGCCGCTCGATTTGCTCACCAGAAATTCAGATTTTCGAGTGGAATT
gggcgatgtgatcttcttgtgttttattactgattagtcggcttgaatcttgcagGTTGAAGCCGCTCGATTTGCTCACCAGAAATTCAGATTTTCGAGTGGAATTCGCTTAATATAGCAATGCACTAGGGTTTACTGTGCACCACTAGGCTACT
tactgat putative branch site (score: 2)
ttttattactgatta TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| tctgtggccgtgtgatcttacgggcagtttgtctcctttttttttgggcgatgtgatcttcttgtgttttattactgattagtcggcttgaatcttgcagGTTGAAGCCGCTCGATTTGCTCACCAGAAATTCAGATTTTCGAGTGGAATTCGCTTAATATAGCAATGCACTAGGGTTTACTGTGCACCACTAGGCTACT
-ctgtggc
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- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -actgatt
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -cggcttg