1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' |
...aattagcttaacttttttggacatctgcctctaaagtccgaatgtgttacattattgggtttattcctgtaacagcactatgtttacactattcatgcagTTGCTGCAGCCTCTGATGGTGTGAAGGCGTGGGACATATTAAAGGAAAAATCTTTCAACATAGACCTTGTTTTAACTGAAGTTGAACTGCCTTTGATGTC
species | Zea mays |
transcript | GRMZM2G367834_T01 |
intron # | 1 |
splice site | 3' |
intron type | U2 |
EST: CTCCACGCGCCACGTCATCTCCGCGCTGCTACGCAAGTGCGGCTACCGAG TTGCTGCCCCCTCTGATGGTGTGAAGGCGTGGGACATATTAAAGGAAAAATEST: gi|149097868|gb|EE183802.2|EE183802
genomic: CTCCACGCGCCACGTCATCTCCGCGCTGCTACGCAAGTGCGGCTACCGAGgtgcgcactg ... attcatgcagTTGCTGCAGCCTCTGATGGTGTGAAGGCGTGGGACATATTAAAGGAAAAAT
EST: CTCCACGCGCCACGTCATCTCCGCGCTGCTACGCAAGTGCGGCTACCGAG TTGCTGCAGCCTCTGATGGTGTGAAGGCGTGGGACATATTAAAGGAAAAATEST: gi|211072181|gb|FK971289.1|FK971289
genomic: CTCCACGCGCCACGTCATCTCCGCGCTGCTACGCAAGTGCGGCTACCGAGgtgcgcactg ... attcatgcagTTGCTGCAGCCTCTGATGGTGTGAAGGCGTGGGACATATTAAAGGAAAAAT
EST: CTCCACGCGCCACGTCATCTCCGCGCTGCTACGCAAGTGCGGCTACCGAG TTGCTGCAGCCTCTGATGGTGTGAAGGCGTGGGACATATTAAAAGAAAAATEST: gi|211072180|gb|FK971288.1|FK971288
genomic: CTCCACGCGCCACGTCATCTCCGCGCTGCTACGCAAGTGCGGCTACCGAGgtgcgcactg ... attcatgcagTTGCTGCAGCCTCTGATGGTGTGAAGGCGTGGGACATATTAAAGGAAAAAT
EST: CTCCACGCGCCACGTCATCTCCGCGCTGCTACGCAAGTGCGGCTACCGAG TTGCTGCAGCCTCTGATGGTGTGAAGGCGTGGGACATATTAAAAGAAAAATEST: gi|148953549|gb|EE153060.2|EE153060
genomic: CTCCACGCGCCACGTCATCTCCGCGCTGCTACGCAAGTGCGGCTACCGAGgtgcgcactg ... attcatgcagTTGCTGCAGCCTCTGATGGTGTGAAGGCGTGGGACATATTAAAGGAAAAAT
EST: CTCCACGCGCCACGTCATCTCCGCGCTGCTACGCAAGTGCGGCTACCGAG TTGCTGCAGCCTCTGATGGTGTGAAGGCGTGGGACATATTAAAGGAAAAATEST: gi|211072179|gb|FK971287.1|FK971287
genomic: CTCCACGCGCCACGTCATCTCCGCGCTGCTACGCAAGTGCGGCTACCGAGgtgcgcactg ... attcatgcagTTGCTGCAGCCTCTGATGGTGTGAAGGCGTGGGACATATTAAAGGAAAAAT
EST: CTCCACGCGCCACGTCATCTCCGCGCTGCTACGCAAGTGCGGCTACCGAG TTGCTGCAGCCTCTGATGGTGTGAAGGCGTGGGACATATTAAAGGAAAAATEST: gi|148959798|gb|EC905675.2|EC905675
genomic: CTCCACGCGCCACGTCATCTCCGCGCTGCTACGCAAGTGCGGCTACCGAGgtgcgcactg ... attcatgcagTTGCTGCAGCCTCTGATGGTGTGAAGGCGTGGGACATATTAAAGGAAAAAT
EST: CTCCACGCGCCACGTCATCTCCGCGCTGCTACGCAAGTGCGGCTACCGAG TTGCTGCAGCCTCTGATGGTGTGAAGGCGTGGGACATATTAAAGGAAAAAT
genomic: CTCCACGCGCCACGTCATCTCCGCGCTGCTACGCAAGTGCGGCTACCGAGgtgcgcactg ... attcatgcagTTGCTGCAGCCTCTGATGGTGTGAAGGCGTGGGACATATTAAAGGAAAAAT
gttacattattgggtttattcctgtaacagcactatgtttacactattcatgcagTTGCTGCAGCCTCTGATGGTGTGAAGGCGTGGGACATATTAAAGGAAAAATCTTTCAACATAGACCTTGTTTTAACTGAAGTTGAACTGCCTTTGATGTC
ctgtaac putative branch site (score: 17)
tatgttta TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| aattagcttaacttttttggacatctgcctctaaagtccgaatgtgttacattattgggtttattcctgtaacagcactatgtttacactattcatgcagTTGCTGCAGCCTCTGATGGTGTGAAGGCGTGGGACATATTAAAGGAAAAATCTTTCAACATAGACCTTGTTTTAACTGAAGTTGAACTGCCTTTGATGTC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CTGAAG
- - - - - - - - - - -catctgc
- - - - - - - - - - - - - - - - - - - -gaatgtg
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -acagcac