Sequence
atgc intronic sequence ATGC exonic sequence...ctatgaacacttttaatctttttcaacaccgtaatgcataaaattaattatttcattggagataaataaattgagtatcttatattccattattgagcagATTGACAGTAATACAGATGGGCTAGTTGATTTTGAGGAGTTTGTTGCTGCAACACTACACGTGCATCAGCTGGTGGAACATGATACTGAGAAGTGGAAAT
Basic information
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: GRMZM2G365035_T02 (Zea mays), 3'ss of exon 1
lower sequence: LOC_Os07g22710.3 (Oryza sativa), 3'ss of exon 9
ctatgaacacttttaatctttttcaacaccgt--aatgcataaaattaa-ttatttcattggagataaataaattgagtatctt---ata-----ttccattattgagcagATTGACAGTAATACAGATGGGCTAGTTGATTTTGAGGAGTTTGTTGCTGCAACACTACACGTGCATCAGCTGGTGGAACATGATACTGAGAAGTGGAAAT
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-----------ttaaatttgcatgtatgcaattgaacggacatcatcaagttttctccttgcaaaggggagtatttgctatcatggcataaagattttcattgctgggcagATTGACAGTAACACAGATGGATTAGTTGATTTCGAAGAGTTTGTTGCTGCAACATTACATGTGCATCAGCTAGTGGAACATGATACTGAGAAGTGGAAAT
upper sequence: GRMZM2G365035_T02 (Zea mays), 3'ss of exon 1
lower sequence: Vv04s0023g03420.t01 (Vitis vinifera), 3'ss of exon 10
ctatgaacacttttaatctt--tttcaacaccgtaatgcataaaattaattatttcattgga--gataaataaattgagtatcttatattccattattgagcagATTGACAGTAATACAGATGGGCTAGTTGATTTTGAGGAGTTTGTTGCTGCAACACTACACGTGCATCAGCTGGTGGAACATGATACTGAGAAGTGGAAAT
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tgacaaatgttcatcaccctacttccctctttatgttgtggatattttttcctttctatggtctggtatcctaatgggagctaccatttgcc----tgaggcagATTGACAGCAATACAGATGGGCTTGTGGATTTTACCGAGTTTGTTGCAGCCACTCTACACGTGCATCAATTGGAGGAACATGACTCTGATAAGTGGCGACMapped EST sequences
Showing partial alignments of ESTs and genomic sequences. See full alignments
ATGC EST sequence
ATGC genomic sequence (exon)
ATGC genomic sequence (truncated intron)
EST:
gi|60338755|gb|DN205728.1|DN205728EST: ATGTTCCATGGAGATTAAAGGGTCCACGTGTTTTAGAGATCATTGAAGCG ATTGACAGTAATACAGATGGGCTAGTTGATTTTGAGGAGTTTGTTGCTGCA
genomic: ATGTTCCATGGAGATTAAAGGGTCCACGTGTTTTAGAGATCATTGAAGCGgtatgttact ... tattgagcagATTGACAGTAATACAGATGGGCTAGTTGATTTTGAGGAGTTTGTTGCTGCA
EST:
gi|18384244|gb|BM417443.1|BM417443EST: ATGTTCCATGGAGATTAAAGGGTCCACGTGTTTTAGAGATCATTGAAGCG ATTGACAGTAATACAGATGGGCTAGTTGATTTTGAGGAGTTTGTTGCTGCA
genomic: ATGTTCCATGGAGATTAAAGGGTCCACGTGTTTTAGAGATCATTGAAGCGgtatgttact ... tattgagcagATTGACAGTAATACAGATGGGCTAGTTGATTTTGAGGAGTTTGTTGCTGCA
atgc intronic sequence ATGC exonic sequenceIntronic sequence truncated to 55 bases.aattatttcattggagataaataaattgagtatcttatattccattattgagcagATTGACAGTAATACAGATGGGCTAGTTGATTTTGAGGAGTTTGTTGCTGCAACACTACACGTGCATCAGCTGGTGGAACATGATACTGAGAAGTGGAAAT
aattaat putative branch site (score: 3)
ttccatt putative PPT
agataaataaattgag TA-rich tract
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
ctatgaacacttttaatctttttcaacaccgtaatgcataaaattaattatttcattggagataaataaattgagtatcttatattccattattgagcagATTGACAGTAATACAGATGGGCTAGTTGATTTTGAGGAGTTTGTTGCTGCAACACTACACGTGCATCAGCTGGTGGAACATGATACTGAGAAGTGGAAAT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TCAGCT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CAGCTG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGGTGG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGTGGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGAAGT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGTGGA
- - - - - - - - - - - -caacacc
- - - - - - - - - - - - - - - - -atgcata
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -aaataaa