Sequence
atgc intronic sequence ATGC exonic sequence...ttccggataaaagggacttgaatggtctcaccaaacccatttaatttttactttactcctgtcttgtacttgtacgcttatctacacattgaattcccagCGTCTCCCCCGCAGCACGGAGGGGGGATCTTCTACGCGCAGCATGGCGCCATGGCCGGCCTTGCCGCGCCCGCGCCACGGAGCTCATCGATGACCGGGGC
Basic information
Mapped EST sequences
Showing partial alignments of ESTs and genomic sequences. See full alignments
ATGC EST sequence
ATGC genomic sequence (exon)
ATGC genomic sequence (truncated intron)
EST:
gi|149079879|gb|EE168885.2|EE168885EST: CAACACGCTACAGGATGATGCCTCGACCGCTTGCACATGAAGAAGTGATG CGTCTCCCCCGCAGCACGGAGGGGGGATCTTCTACGCGCAGCATGGCGCCA
genomic: CAACACGCTACAGGATGATGCCTCGACCGCTTGCACATGAAGAAGTGATGgtatcaaaga ... gaattcccagCGTCTCCCCCGCAGCACGGAGGGGGGATCTTCTACGCGCAGCATGGCGCCA
atgc intronic sequence ATGC exonic sequenceIntronic sequence truncated to 55 bases.ttttactttactcctgtcttgtacttgtacgcttatctacacattgaattcccagCGTCTCCCCCGCAGCACGGAGGGGGGATCTTCTACGCGCAGCATGGCGCCATGGCCGGCCTTGCCGCGCCCGCGCCACGGAGCTCATCGATGACCGGGGC
ttccc CT-rich tract
attgaatt TA-rich tract
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
ttccggataaaagggacttgaatggtctcaccaaacccatttaatttttactttactcctgtcttgtacttgtacgcttatctacacattgaattcccagCGTCTCCCCCGCAGCACGGAGGGGGGATCTTCTACGCGCAGCATGGCGCCATGGCCGGCCTTGCCGCGCCCGCGCCACGGAGCTCATCGATGACCGGGGC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAGCT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGCTCA
- - -gataaaag
- - - - - - - - -ttgaatg
- - - - - - - - - - - - - - caccaaa
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -gtacttg
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -ctacaca