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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

...ataggatctccaatactgactgtcagttttgttgtaccacgaagcattttgtaattttgacattacccttcatgacattttgcactgttgtgatggccagATGGCTGGGAAAGTCGGTGGGTCAAGTCCGAGTGGAAGAAGGATGAGAACATGGCTGGTGAATGGAACCACACCTCGGGAAAATGGAATGGAGATGCCGA

Basic information

species Zea mays
transcript GRMZM2G358059_T01
intron # 1
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GRMZM2G358059_T01 (Zea mays), 3'ss of exon 1
lower sequence: LOC_Os07g14270.2 (Oryza sativa), 3'ss of exon 1
--ataggatctccaatactgactgtcagttttgttgtaccacgaagcattttgtaattttgacattacccttcatgacattttgcactgttgtgatggccagATGGCTGGGAAAGTCGGTGGGTCAAGTCCGAGTGGAAGAAGGATGAGAACATGGCTGGTGAATGGAACCACACCTCGGGAAAATGGAATGGAGATGCCGA
      |||    |||  ||  ||    |||  | || |  |  |  ||    | |   ||   ||     | ||   | | |   || ||||| ||  ||||||| ||||||||||||||||||||||| || ||||||||||||||||||||||||||||||||||||||||| || || || |||||||||||| | ||
cgggcagataatgaat-ttgcgtgatcatttgctggttctgcacatgatgcactgaacatggagttctgtgttatctaaatgtattctattgtg-tgcacagATGGATGGGAAAGTCGGTGGGTCAAGTCAGAATGGAAGAAGGATGAGAACATGGCTGGTGAATGGAACCACACATCTGGGAAGTGGAATGGAGATCCTGA

upper sequence: GRMZM2G358059_T01 (Zea mays), 3'ss of exon 1
lower sequence: GLYMA20G23080.2 (Glycine max), 3'ss of exon 1
----ataggatctccaatactgactgtcagttttgttgtaccacgaagcattttgtaattttgacattaccc-ttcatgacattttgcactgttgtgatggccagATGGCTGGGAAAGTCGGTGGGTCAAGTCCGAGTGGAAGAAGGATGAGAACATGGCTGGTGAATGGAACCACACCTCGGGAAAATGGAATGGAGATGCCGA
     |    | ||         ||||   |||| || ||     ||    |  ||| |||  |  || |    || ||    | |||  |||    |||  |||| || |||| || ||| ||||| || || || ||||| || ||||||||| ||||||| || |||||||||||||| ||  ||||||||||||| ||  |
ggtagtcccttttcgtggttcatctgtatctttttttttaatcttaaa---tcagtattttccatttttctaactcgtgtgcatgtgctttgtgtgaatg--cagACGGATGGGGAAATCGTTGGGTTAAATCAGATTGGAAAAAAGATGAGAACCTGGCTGGGGAGTGGAACCACACCTCTGGCCAATGGAATGGAGACGCTAA

upper sequence: GRMZM2G358059_T01 (Zea mays), 3'ss of exon 1
lower sequence: GLYMA10G28890.1 (Glycine max), 3'ss of exon 1
ataggatctccaatactgactgtcagttttgttgtaccacgaagcatttt-gtaattttgacattaccc-ttcatgacattttgcactgttgtgatggccagATGGCTGGGAAAGTCGGTGGGTCAAGTCCGAGTGGAAGAAGGATGAGAACATGGCTGGTGAATGGAACCACACCTCGGGAAAATGGAATGGAGATGCCGA
   ||   |||  |   |    ||| || | || |          |  |  ||| ||   || || |    || ||    | |||  ||| |||   |||||| || ||||||| ||| ||||| || || || ||||| || ||||||||| ||||||| || |||||||||||||| ||  ||||||||||||| ||  |
-cgggtagtcctttttcggagttcatttgtattttctttaatcctagatcagtatttcccacttttctaactcgtgtgcatgtgctttgt-gtggatgccagACGGGTGGGAAAATCGATGGGTTAAATCAGATTGGAAAAAAGATGAGAACGTGGCTGGGGAGTGGAACCACACCTCTGGTCAATGGAATGGAGACGCTAA

upper sequence: GRMZM2G358059_T01 (Zea mays), 3'ss of exon 1
lower sequence: Vv14s0060g01290.t01 (Vitis vinifera), 3'ss of exon 1
ataggatctccaatactgactgtcagttttgttgtaccacgaagcattttgtaattttg--acattacccttcatgacattttgcactgttgtg-atggccagATGGCTGGGAAAGTCGGTGGGTCAAGTCCGAGTGGAAGAAGGATGAGAACATGGCTGGTGAATGGAACCACACCTCGGGAAAATGGAATGGAGATGCCGA
    |||   | || ||   |   | |  |     |  |       | || | | |||    ||||     | || |  |  | || | |||   |     |||||| ||||| | |  |||||| || ||||| |||||||| ||||||||||||||||| ||||||||| ||||||| || |||||| |||||||  |  |
--ctgataatccatgcttgtttcaattaataaatcagtatttgctttcttatgactttcctgcattgggtctaat-atgtaattcatttttgaatactttaagATGGATGGGAGAATAAGTGGGTTAAATCCGAATGGAAGAAAGATGAGAACATGGCTGGGGAATGGAACTACACCTCTGGTAAATGGCATGGAGACCCGAA

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|211330017|gb|FL047760.1|FL047760
EST:     CTCTGTCGCCGCCGTTGCAGGGGAGGTCTTCTTCCAGGAGAAGTTCGAAG                         ATGGCTGGGAAAGTCGGTGGGTCAAGTCCGAGTGGAAGAAGGATGAGAACA
genomic: CTCTGTCGCCGCCGTTGCAGGGGAGGTCTTCTTCCAGGAGAAGTTCGAAGgtgattccct ... tgatggccagATGGCTGGGAAAGTCGGTGGGTCAAGTCCGAGTGGAAGAAGGATGAGAACA
EST: gi|211334353|gb|FL047792.1|FL047792
EST:     CTCTGTCGCCGCCGTCGCAGGGGAGGTCTTCTTCCAGGAGAAGTTCGAAG                         ATGGCTGGGAAAGTAGGTGGGTCAAGTCTGAGTGGAAGAAGGATGAGAACA
genomic: CTCTGTCGCCGCCGTTGCAGGGGAGGTCTTCTTCCAGGAGAAGTTCGAAGgtgattccct ... tgatggccagATGGCTGGGAAAGTCGGTGGGTCAAGTCCGAGTGGAAGAAGGATGAGAACA
EST: gi|211433988|gb|FL047892.1|FL047892
EST:     CTCTGTCGCCGCCGTTGCAGGGGAGGTCTTCTTCCAGGAGAAGTTCGAAG                         ATGGCTGGGAAAGTCGGTGGGTCAAGTCCGAGTGGAAGAAGGATGAGAACA
genomic: CTCTGTCGCCGCCGTTGCAGGGGAGGTCTTCTTCCAGGAGAAGTTCGAAGgtgattccct ... tgatggccagATGGCTGGGAAAGTCGGTGGGTCAAGTCCGAGTGGAAGAAGGATGAGAACA
EST: gi|211423574|gb|FL047828.1|FL047828
EST:     CTCTGTCGCCGCCGTTGCAGGGGAGGTCTTCTTCCAGGAGAAGTTCGAAG                         ATGGCTGGGAAAGTCGGTGGGTCAAGTCCGAGTGGAAGAAGGATGAGAACA
genomic: CTCTGTCGCCGCCGTTGCAGGGGAGGTCTTCTTCCAGGAGAAGTTCGAAGgtgattccct ... tgatggccagATGGCTGGGAAAGTCGGTGGGTCAAGTCCGAGTGGAAGAAGGATGAGAACA
EST: gi|211439181|gb|FL047919.1|FL047919
EST:     CTCTGTCGCCGCCGTTGCAGGGGAGGTCTTCTTCCAGGAGAAGTTCGAAG                         ATGGCTGGGAAAGTCGGTGGGTCAAGTCCGAGTGGAAGAAGGATGAGAACA
genomic: CTCTGTCGCCGCCGTTGCAGGGGAGGTCTTCTTCCAGGAGAAGTTCGAAGgtgattccct ... tgatggccagATGGCTGGGAAAGTCGGTGGGTCAAGTCCGAGTGGAAGAAGGATGAGAACA
EST: gi|211428795|gb|FL047872.1|FL047872
EST:     CTCTGTCGCCGCCGTCGCAGGGGAGGTCTTCTTCCAGGAGAAGTTCGAAG                         ATGGCTGGGAAAGTAGGTGGGTCAAGTCTGAGTGGAAGAAGGATGAGAACA
genomic: CTCTGTCGCCGCCGTTGCAGGGGAGGTCTTCTTCCAGGAGAAGTTCGAAGgtgattccct ... tgatggccagATGGCTGGGAAAGTCGGTGGGTCAAGTCCGAGTGGAAGAAGGATGAGAACA
EST: gi|60347982|gb|DN214955.1|DN214955
EST:     CTCTGTCGCCGCCGTTGCAGGGGAGGTCTTCTTCCAGGAGAAGTTCGAAG                         ATGGCTGGGAAAGTCGGTGGGTCAAGTCCGAGTGGAAGAAGGATGAGAACA
genomic: CTCTGTCGCCGCCGTTGCAGGGGAGGTCTTCTTCCAGGAGAAGTTCGAAGgtgattccct ... tgatggccagATGGCTGGGAAAGTCGGTGGGTCAAGTCCGAGTGGAAGAAGGATGAGAACA
EST: gi|211423580|gb|FL047834.1|FL047834
EST:     CTCTGTCGCCGCCGTTGCAGGGGAGGTCTTCTTCCAGGAGAAGTTCGAAG                         ATGGCTGGGAAAGTCGGTGGGTCAAGTCCGAGTGGAAGAAGGATGAGAACA
genomic: CTCTGTCGCCGCCGTTGCAGGGGAGGTCTTCTTCCAGGAGAAGTTCGAAGgtgattccct ... tgatggccagATGGCTGGGAAAGTCGGTGGGTCAAGTCCGAGTGGAAGAAGGATGAGAACA
EST: gi|211327850|gb|FL047739.1|FL047739
EST:     CTCTGTCGCCGCCGTTGCAGGGGAGGTCTTCTTCCAGGAGAAGTTCGAAG                         ATGGCTGGGAAAGTCGGTGGGTCAAGTCCGAGTGGAAGAAGGATGAGAACA
genomic: CTCTGTCGCCGCCGTTGCAGGGGAGGTCTTCTTCCAGGAGAAGTTCGAAGgtgattccct ... tgatggccagATGGCTGGGAAAGTCGGTGGGTCAAGTCCGAGTGGAAGAAGGATGAGAACA
EST: gi|211433991|gb|FL047895.1|FL047895
EST:     CTCTGTCGCCGCCGTTGCAGGGGAGGTCTTCTTCCAGGAGAAGTTCGAAG                         ATGGCTGGGAAAGTCGGTGGGTCAAGTCCGAGTGGAAGAAGGATGAGAACA
genomic: CTCTGTCGCCGCCGTTGCAGGGGAGGTCTTCTTCCAGGAGAAGTTCGAAGgtgattccct ... tgatggccagATGGCTGGGAAAGTCGGTGGGTCAAGTCCGAGTGGAAGAAGGATGAGAACA
EST: gi|211431384|gb|FL047874.1|FL047874
EST:     CTCTGTCGCCGCCGTTGCAGGGGAGGTCTTCTTCCAGGAGAAGTTCGAAG                         ATGGCTGGGAAAGTCGGTGGGTCAAGTCCGAGTGGAAGAAGGATGAGAACA
genomic: CTCTGTCGCCGCCGTTGCAGGGGAGGTCTTCTTCCAGGAGAAGTTCGAAGgtgattccct ... tgatggccagATGGCTGGGAAAGTCGGTGGGTCAAGTCCGAGTGGAAGAAGGATGAGAACA
EST: gi|211426195|gb|FL047847.1|FL047847
EST:     CTCTGTCGCCGCCGTTGCAGGGGAGGTCTTCTTCCAGGAGAAGTTCGAAG                         ATGGCTGGGAAAGTCGGTGGGTCAAGTCCGAGTGGAAGAATGATGAGAACA
genomic: CTCTGTCGCCGCCGTTGCAGGGGAGGTCTTCTTCCAGGAGAAGTTCGAAGgtgattccct ... tgatggccagATGGCTGGGAAAGTCGGTGGGTCAAGTCCGAGTGGAAGAAGGATGAGAACA
EST: gi|211426194|gb|FL047846.1|FL047846
EST:     CTCTGTCGCCGCCGTTGCAGGGGAGGTCTTCTTCCAGGAGAAGTTCGAAG                         ATGGCTGGGAAAGTCGGTGGGTCAAGTCCGAGTGGAAGAAGGATGAGAACA
genomic: CTCTGTCGCCGCCGTTGCAGGGGAGGTCTTCTTCCAGGAGAAGTTCGAAGgtgattccct ... tgatggccagATGGCTGGGAAAGTCGGTGGGTCAAGTCCGAGTGGAAGAAGGATGAGAACA
EST: gi|211334344|gb|FL047783.1|FL047783
EST:     CTCTGTCGCCGCCGTTGCAGGGGAGGTCTTCTTCCAGGAGAAGTTCGAAG                         ATGGCTGGGAAAGTCGGTGGGTCAAGTCCGAGTGGAAGAAGGATGAGAACA
genomic: CTCTGTCGCCGCCGTTGCAGGGGAGGTCTTCTTCCAGGAGAAGTTCGAAGgtgattccct ... tgatggccagATGGCTGGGAAAGTCGGTGGGTCAAGTCCGAGTGGAAGAAGGATGAGAACA
EST: gi|22521047|gb|BU079858.1|BU079858
EST:     CTCTGTCGCCGCCGTCGCAGGGGAGGTCTTCTTCCAGGAGAAGTTCGAAG                         ATGGCTGGGAAAGTCGGTGGGTCAAGTCCGAGTGGAAGAAGGATGAGAACA
genomic: CTCTGTCGCCGCCGTTGCAGGGGAGGTCTTCTTCCAGGAGAAGTTCGAAGgtgattccct ... tgatggccagATGGCTGGGAAAGTCGGTGGGTCAAGTCCGAGTGGAAGAAGGATGAGAACA
EST: gi|22935511|gb|BU571786.1|BU571786
EST:     CTCTGTCGCCGCCGTCGCAGGGGAGGTCTTCTTCCAGGAGAAGTTCGAAG                         ATGGCTGGGAAAGTCGGTGGGTCAAGTCCGAGTGGAAGAAGGATGAGAACA
genomic: CTCTGTCGCCGCCGTTGCAGGGGAGGTCTTCTTCCAGGAGAAGTTCGAAGgtgattccct ... tgatggccagATGGCTGGGAAAGTCGGTGGGTCAAGTCCGAGTGGAAGAAGGATGAGAACA
EST: gi|71432523|gb|DR813573.1|DR813573
EST:     CTCTGTCGCCGCCGTTGCAGGGGAGGTCTTCTTCCAGGAGAAGTTCGAAG                         ATGGCTGGGAAAGTCGGTGGGTCAAGTCCGAGTGGAAGAAGGATGAGAACA
genomic: CTCTGTCGCCGCCGTTGCAGGGGAGGTCTTCTTCCAGGAGAAGTTCGAAGgtgattccct ... tgatggccagATGGCTGGGAAAGTCGGTGGGTCAAGTCCGAGTGGAAGAAGGATGAGAACA
EST: gi|211003003|gb|FL047945.1|FL047945
EST:     CTCTGTCGCCGCCGTTGCATGGGAGGTCTTCTTCCAGGAGAAGTTCGAAG                         ATGGCTGGGAAAGTCGGTGGGTCAAGTCCGAGTGGAAGAAGGATGAGAACA
genomic: CTCTGTCGCCGCCGTTGCAGGGGAGGTCTTCTTCCAGGAGAAGTTCGAAGgtgattccct ... tgatggccagATGGCTGGGAAAGTCGGTGGGTCAAGTCCGAGTGGAAGAAGGATGAGAACA
EST: gi|211431391|gb|FL047881.1|FL047881
EST:     CTCTGTCGCCGCCGTTGCAGGGGAGGTCTTCTTCCAGGAGAAGTTCGAAG                         ATGGCTGGGAAAGTCGGTGGGTCAAGTCCGAGTGGAAGAAGGATGAGAACA
genomic: CTCTGTCGCCGCCGTTGCAGGGGAGGTCTTCTTCCAGGAGAAGTTCGAAGgtgattccct ... tgatggccagATGGCTGGGAAAGTCGGTGGGTCAAGTCCGAGTGGAAGAAGGATGAGAACA
EST: gi|211332183|gb|FL047773.1|FL047773
EST:     CTCTGTCGCCGCCGTTGCAGGGGAGGTCTTCTTCCAGGAGAAGTTCGAAG                         ATGGCTGGGAAAGTCGGTGGGTCAAGTCCGAGTGGAAGAAGGATGAGAACA
genomic: CTCTGTCGCCGCCGTTGCAGGGGAGGTCTTCTTCCAGGAGAAGTTCGAAGgtgattccct ... tgatggccagATGGCTGGGAAAGTCGGTGGGTCAAGTCCGAGTGGAAGAAGGATGAGAACA
EST: gi|211428782|gb|FL047859.1|FL047859
EST:     CTCTGTCGCCGCCGTTGCAGGGGAGGTCTTCTTCCAGGAGAAGTTCGAAG                         ATGGCTGGGAAAGTMGGTGGGTCAAGTCCGAGTGGAAGAAGGATGAGAACA
genomic: CTCTGTCGCCGCCGTTGCAGGGGAGGTCTTCTTCCAGGAGAAGTTCGAAGgtgattccct ... tgatggccagATGGCTGGGAAAGTCGGTGGGTCAAGTCCGAGTGGAAGAAGGATGAGAACA
EST: gi|211433984|gb|FL047888.1|FL047888
EST:     CTCTGTCGCCGCCGTTGCAGGGGAGGTCTTCTTCCAGGAGAAGTWCGAAG                         ATGGCTGGGAAAGTCGGTGGGTCAAGTCCGAGTGGAAGAAGGATGAGAACA
genomic: CTCTGTCGCCGCCGTTGCAGGGGAGGTCTTCTTCCAGGAGAAGTTCGAAGgtgattccct ... tgatggccagATGGCTGGGAAAGTCGGTGGGTCAAGTCCGAGTGGAAGAAGGATGAGAACA
EST: gi|211423582|gb|FL047836.1|FL047836
EST:     CTCTGTCGCCGCCGTCGCAGGGGAGGTCTTCTTCCAGGAGAAGTTCGAAG                         ATGGCTGGGAAAGTAGGTGGGTCAAGTCTGAGTGGAAGAAGGATGAGAACA
genomic: CTCTGTCGCCGCCGTTGCAGGGGAGGTCTTCTTCCAGGAGAAGTTCGAAGgtgattccct ... tgatggccagATGGCTGGGAAAGTCGGTGGGTCAAGTCCGAGTGGAAGAAGGATGAGAACA
EST: gi|29130657|gb|CB381361.1|CB381361
EST:     CTCTGTCGCCGCCG-TGCAGGGGAGGTCTTCTTCCAGGAGAAGTTCGAAG                         ATGGCTGGGAAAGTCGG-GGGTCAAGTCCGAGTGGAAGAAGGATGAGAACA
genomic: CTCTGTCGCCGCCGTTGCAGGGGAGGTCTTCTTCCAGGAGAAGTTCGAAGgtgattccct ... tgatggccagATGGCTGGGAAAGTCGGTGGGTCAAGTCCGAGTGGAAGAAGGATGAGAACA
EST: gi|211426203|gb|FL047855.1|FL047855
EST:     CTCTGTCGCCGCCGTTGCAGGGGAGGTCTTCTTCCAGGAGAAGTTCGAAG                         ATGGCTGGGAAAGTCGGTGGGTCAAGTCCGAGTGGAAGAAGGATGAGAACA
genomic: CTCTGTCGCCGCCGTTGCAGGGGAGGTCTTCTTCCAGGAGAAGTTCGAAGgtgattccct ... tgatggccagATGGCTGGGAAAGTCGGTGGGTCAAGTCCGAGTGGAAGAAGGATGAGAACA
EST: gi|31406074|gb|CD484806.1|CD484806
EST:     CTCTGTCGCCGCCGTTGCAGGGGAGGTCTTCTTCCAGGAGAAGTTCGAAG                         ATGGCTGGGAAAGTCGG-GGGTCAAGTCCGAGTGGAAGAAGGATGAGAACA
genomic: CTCTGTCGCCGCCGTTGCAGGGGAGGTCTTCTTCCAGGAGAAGTTCGAAGgtgattccct ... tgatggccagATGGCTGGGAAAGTCGGTGGGTCAAGTCCGAGTGGAAGAAGGATGAGAACA
EST: gi|211325686|gb|FL047734.1|FL047734
EST:     CTCTGTCGCCGCCGTTGCAGGGGAGGTCTTCTTCCAGGAGAAGTTCGAAG                         ATGGCTGGGAAAGTCGGTGGGTCAAGTCCGAGTGGAAGAAGGATGAGAACA
genomic: CTCTGTCGCCGCCGTTGCAGGGGAGGTCTTCTTCCAGGAGAAGTTCGAAGgtgattccct ... tgatggccagATGGCTGGGAAAGTCGGTGGGTCAAGTCCGAGTGGAAGAAGGATGAGAACA
EST: gi|149074503|gb|EE162899.2|EE162899
EST:     CTCTGTCGCCGCCGTTGCAGGGGAGGTCTTCTTCCAGGAGAAGTTCGAAG                         ATGGCTGGGAAAGTCGGTGGGTCAAGTCCGAGTGGAAGAAGGATGAGAACA
genomic: CTCTGTCGCCGCCGTTGCAGGGGAGGTCTTCTTCCAGGAGAAGTTCGAAGgtgattccct ... tgatggccagATGGCTGGGAAAGTCGGTGGGTCAAGTCCGAGTGGAAGAAGGATGAGAACA
EST: gi|211436593|gb|FL047911.1|FL047911
EST:     CTCTGTCGCCGCCGTTGCAGGGGAGGTCTTCTTCCAGGAGAAGTTCGAAG                         ATGGCTGGGAAAGTCGGTGGGTCAAGTCCGAGTGGAAGAAGGATGAGAACA
genomic: CTCTGTCGCCGCCGTTGCAGGGGAGGTCTTCTTCCAGGAGAAGTTCGAAGgtgattccct ... tgatggccagATGGCTGGGAAAGTCGGTGGGTCAAGTCCGAGTGGAAGAAGGATGAGAACA
EST: gi|211436597|gb|FL047915.1|FL047915
EST:     CTCTGTCGCCGCCGTTGCAGGGGAGGTCTTCTTCCAGGAGAAGTTCGAAG                         ATGGCTGGGAAAGTCGGTGGGTCAAGTCCGAGTGGAAGAAGGATGAGAACA
genomic: CTCTGTCGCCGCCGTTGCAGGGGAGGTCTTCTTCCAGGAGAAGTTCGAAGgtgattccct ... tgatggccagATGGCTGGGAAAGTCGGTGGGTCAAGTCCGAGTGGAAGAAGGATGAGAACA
EST: gi|211431386|gb|FL047876.1|FL047876
EST:     CTCTGTCGCCGCCGTTGCAGGGGAGGTCTTCTTCCAGGAGAAGTTCGAAG                         ATGGCTGGGAAAGTCGGTGGGTCAAGTCCGAGTGGAAGAAGGATGAGAACA
genomic: CTCTGTCGCCGCCGTTGCAGGGGAGGTCTTCTTCCAGGAGAAGTTCGAAGgtgattccct ... tgatggccagATGGCTGGGAAAGTCGGTGGGTCAAGTCCGAGTGGAAGAAGGATGAGAACA
EST: gi|22546283|gb|BU098594.1|BU098594
EST:     CTCTGTCGCCGCCGTCGCAGGGGAGGTCTTCTTCCAGGAGAAGTTCGAAG                         ATGGCTGGGAAAGTCGGTGGGTCAAGTCCGAGTGGAAGAAGGATGAGAACA
genomic: CTCTGTCGCCGCCGTTGCAGGGGAGGTCTTCTTCCAGGAGAAGTTCGAAGgtgattccct ... tgatggccagATGGCTGGGAAAGTCGGTGGGTCAAGTCCGAGTGGAAGAAGGATGAGAACA
EST: gi|29946731|gb|CB816297.1|CB816297
EST:     CTCTGTCGCCGCCGTTGCAGGGGAGGTCTTCTTCCAGGAGAAGTTCGAAG                         ATGGCTGGGAAAGTCGGTGGGTCAAGTCCGAGTGGAAGAAGGATGAGAACA
genomic: CTCTGTCGCCGCCGTTGCAGGGGAGGTCTTCTTCCAGGAGAAGTTCGAAGgtgattccct ... tgatggccagATGGCTGGGAAAGTCGGTGGGTCAAGTCCGAGTGGAAGAAGGATGAGAACA
EST: gi|32865935|gb|CF005617.1|CF005617
EST:     CTCTGTCGCCGCCGTCGCAGGGGAGGTCTTCTTCCAGGAGAAGTTCGAAG                         ATGGCTGGGAAAGTCGGTGGGTCAAGTCCGAGTGGAAGAAGGATGAGAACA
genomic: CTCTGTCGCCGCCGTTGCAGGGGAGGTCTTCTTCCAGGAGAAGTTCGAAGgtgattccct ... tgatggccagATGGCTGGGAAAGTCGGTGGGTCAAGTCCGAGTGGAAGAAGGATGAGAACA
EST: gi|26559338|gb|CA831573.1|CA831573
EST:     CTCTGTCGCCGCCGTCGCAGGGGAGGTCTTCTTCCAGGAGAAGTTCGAAG                         ATGGCTGGGAAAGTCGGTGGGTCAAGTCCGAGTGGAAGAAGGATGAGAACA
genomic: CTCTGTCGCCGCCGTTGCAGGGGAGGTCTTCTTCCAGGAGAAGTTCGAAGgtgattccct ... tgatggccagATGGCTGGGAAAGTCGGTGGGTCAAGTCCGAGTGGAAGAAGGATGAGAACA
EST: gi|211499529|gb|FL287332.1|FL287332
EST:     CTCTGTCGCCGCCGTCGCAGGGGAGGTCTTCTTCCAGGAGAAGTTCGAAG                         ATGGCTGGGAAAGTAGGTGGGTCAAGTCTGAGTGGAAGAAGGATGAGAACA
genomic: CTCTGTCGCCGCCGTTGCAGGGGAGGTCTTCTTCCAGGAGAAGTTCGAAGgtgattccct ... tgatggccagATGGCTGGGAAAGTCGGTGGGTCAAGTCCGAGTGGAAGAAGGATGAGAACA
EST: gi|15545715|gb|BI643509.1|BI643509
EST:     CTCTGTCGCCGCCGTCGCAGGGGAGGTCTTCTTCCAGGAGAAGTTCGAAG                         ATGGCTGGGAAAGTCGGTGGGTCAAGTCCGAGTGGAAGAAGGATGAGAACA
genomic: CTCTGTCGCCGCCGTTGCAGGGGAGGTCTTCTTCCAGGAGAAGTTCGAAGgtgattccct ... tgatggccagATGGCTGGGAAAGTCGGTGGGTCAAGTCCGAGTGGAAGAAGGATGAGAACA
EST: gi|211439183|gb|FL047921.1|FL047921
EST:     CTCTGTCGCCGCCGTTGCAGGGGAGGTCTTCTTCCAGGAGAAGTTCGAAG                         ATGGCTGGGAAAGTCGGTGGGTCAAGTCCGAGTGGAAGAAGGATGAGAACA
genomic: CTCTGTCGCCGCCGTTGCAGGGGAGGTCTTCTTCCAGGAGAAGTTCGAAGgtgattccct ... tgatggccagATGGCTGGGAAAGTCGGTGGGTCAAGTCCGAGTGGAAGAAGGATGAGAACA
EST: gi|211439189|gb|FL047927.1|FL047927
EST:     CTCTGTCGCCGCCGTTGCAGGGGAGGTCTTCTTCCAGGAGAAGTTCGAAG                         ATRGCTGGGAAAGTCGGTGGGTCAAGTCCGAGTGGAAGAAGGATGAGAACA
genomic: CTCTGTCGCCGCCGTTGCAGGGGAGGTCTTCTTCCAGGAGAAGTTCGAAGgtgattccct ... tgatggccagATGGCTGGGAAAGTCGGTGGGTCAAGTCCGAGTGGAAGAAGGATGAGAACA
EST: gi|211433992|gb|FL047896.1|FL047896
EST:     CTCTGTCGCCGCCGTCGCAGGGGAGGTCTTCTTCCAGGAGAAGTTCGAAG                         ATGGCTGGGAAAGTAGGTGGGTCAAGTCTGAGTGGAAGAAGGATGAGAACA
genomic: CTCTGTCGCCGCCGTTGCAGGGGAGGTCTTCTTCCAGGAGAAGTTCGAAGgtgattccct ... tgatggccagATGGCTGGGAAAGTCGGTGGGTCAAGTCCGAGTGGAAGAAGGATGAGAACA
EST: gi|148951386|gb|EC897102.2|EC897102
EST:     CTCTGTCGCCGCCGTTGCAGGGGAGGTCTTCTTCCAGGAGAAGTTCGAAG                         ATGGCTGGGAAAGTCGGTGGGTCAAGTCCGAGTGGAAGAAGGATGAGAACA
genomic: CTCTGTCGCCGCCGTTGCAGGGGAGGTCTTCTTCCAGGAGAAGTTCGAAGgtgattccct ... tgatggccagATGGCTGGGAAAGTCGGTGGGTCAAGTCCGAGTGGAAGAAGGATGAGAACA
EST: gi|29167990|gb|CB411250.1|CB411250
EST:     CTCTGTCGCCGCCGTTGCAGGGGAGGTCTTCTTCCAGGAGAAGTTCGAAG                         ATGGCTGGGAAAGTCGGTGGGTCAAGTCCGAGTGGAAGAAGGATGAGAACA
genomic: CTCTGTCGCCGCCGTTGCAGGGGAGGTCTTCTTCCAGGAGAAGTTCGAAGgtgattccct ... tgatggccagATGGCTGGGAAAGTCGGTGGGTCAAGTCCGAGTGGAAGAAGGATGAGAACA
EST: gi|211423579|gb|FL047833.1|FL047833
EST:     CTCTGTCGCCGCCGTTGCAGGGGAGGTCTTCTTCCAGGAGAAGTTCGAAG                         ATGGCTGGGAAAGTCGGTGGGTCAAGTCCGAGTGGAAGAAGGATTAGAACA
genomic: CTCTGTCGCCGCCGTTGCAGGGGAGGTCTTCTTCCAGGAGAAGTTCGAAGgtgattccct ... tgatggccagATGGCTGGGAAAGTCGGTGGGTCAAGTCCGAGTGGAAGAAGGATGAGAACA
EST: gi|32908608|gb|CF013421.1|CF013421
EST:     CTCTGTCGCCGCCGTCGCAGGGGAGGTCTTCTTCCAGGAGAAGTTCGAAG                         ATGGCTGGGAAAGTCGGTGGGTCAAGTCCGAGTGGAAGAAGGATGAGAACA
genomic: CTCTGTCGCCGCCGTTGCAGGGGAGGTCTTCTTCCAGGAGAAGTTCGAAGgtgattccct ... tgatggccagATGGCTGGGAAAGTCGGTGGGTCAAGTCCGAGTGGAAGAAGGATGAGAACA
EST: gi|211433993|gb|FL047897.1|FL047897
EST:     CTCTGTCGCCGCCGTTGCAGGGGAGGTCTTCTTCCAGGAGAAGTTCGAAG                         ATGGCTGGGAAAGTCGGTGGGTCAAGTCCGAGTGGAAGAAGGATGAGAACA
genomic: CTCTGTCGCCGCCGTTGCAGGGGAGGTCTTCTTCCAGGAGAAGTTCGAAGgtgattccct ... tgatggccagATGGCTGGGAAAGTCGGTGGGTCAAGTCCGAGTGGAAGAAGGATGAGAACA
EST: gi|211420975|gb|FL047814.1|FL047814
EST:     CTCTGTCGCCGCCGTTGCAGGGGAGGTCTTCTTCCAGGAGAAGTTCGAAG                         ATGGCTGGGAAAGTCGGTGGGTCAAGTCCGAGTGGAAGAAGGATGAGAACA
genomic: CTCTGTCGCCGCCGTTGCAGGGGAGGTCTTCTTCCAGGAGAAGTTCGAAGgtgattccct ... tgatggccagATGGCTGGGAAAGTCGGTGGGTCAAGTCCGAGTGGAAGAAGGATGAGAACA
EST: gi|71438877|gb|DR819927.1|DR819927
EST:     CTCTGTCGCCGCCGTTGCAGGGGAGGTCTTCTTCCAGGAGAAGTTCGAAG                         ATGGCTGGGAAAGTCGGTGGGTCAAGTCCGAGTGGAAGAAGGATGAGAACA
genomic: CTCTGTCGCCGCCGTTGCAGGGGAGGTCTTCTTCCAGGAGAAGTTCGAAGgtgattccct ... tgatggccagATGGCTGGGAAAGTCGGTGGGTCAAGTCCGAGTGGAAGAAGGATGAGAACA
EST: gi|31910284|gb|CD651346.1|CD651346
EST:     CTCTGTCGCCGCCGTTGCAGGGGAGGTCTTCTTCCAGGAGAAGTTCGAAG                         ATGGCTGGGAAAGTCGGTGGGTCAAGTCCGAGTGGAAGAAGGATGAGAACA
genomic: CTCTGTCGCCGCCGTTGCAGGGGAGGTCTTCTTCCAGGAGAAGTTCGAAGgtgattccct ... tgatggccagATGGCTGGGAAAGTCGGTGGGTCAAGTCCGAGTGGAAGAAGGATGAGAACA
EST: gi|211420980|gb|FL047819.1|FL047819
EST:     CTCTGTCGCCGCCGTTGCAGGGGAGGTCTTCTTCCAGGAGAAGTTCGAAG                         ATGGCTGGGAAAGTCGGTGGGTCAAGTCCGAGTGGAAGAAGGATGAGAACA
genomic: CTCTGTCGCCGCCGTTGCAGGGGAGGTCTTCTTCCAGGAGAAGTTCGAAGgtgattccct ... tgatggccagATGGCTGGGAAAGTCGGTGGGTCAAGTCCGAGTGGAAGAAGGATGAGAACA
EST: gi|32864216|gb|CF003898.1|CF003898
EST:     CTCTGTCGCCGCCGTCGCAGGGGAGGTCTTCTTCCAGGAGAAGTTCGAAG                         ATGGCTGGGAAAGTCGGTGGGTCAAGTCCGAGTGGAAGAAGGATGAGAACA
genomic: CTCTGTCGCCGCCGTTGCAGGGGAGGTCTTCTTCCAGGAGAAGTTCGAAGgtgattccct ... tgatggccagATGGCTGGGAAAGTCGGTGGGTCAAGTCCGAGTGGAAGAAGGATGAGAACA
EST: gi|148963937|gb|EE015058.2|EE015058
EST:     CTCTGTCGCCGCCGTTGCAGGGGAGGTCTTCTTCCAGGAGAAGTTCGAAG                         ATGGCTGGGAAAGTCGGTGGGTCAAGTCCGAGTGGAAGAAGGATGAGAACA
genomic: CTCTGTCGCCGCCGTTGCAGGGGAGGTCTTCTTCCAGGAGAAGTTCGAAGgtgattccct ... tgatggccagATGGCTGGGAAAGTCGGTGGGTCAAGTCCGAGTGGAAGAAGGATGAGAACA
EST: gi|211002993|gb|FL047935.1|FL047935
EST:     CTCTGTCGCCGCCGTTGCAGGGGAGGTCTTCTTCCAGGAGAAGTTCGAAG                         ATGGCTGGGAAAGTCGGTGGGTCAAGTCCGAGTGGAAGAAGGATGAGAACA
genomic: CTCTGTCGCCGCCGTTGCAGGGGAGGTCTTCTTCCAGGAGAAGTTCGAAGgtgattccct ... tgatggccagATGGCTGGGAAAGTCGGTGGGTCAAGTCCGAGTGGAAGAAGGATGAGAACA
EST: gi|31611756|gb|CD568378.1|CD568378
EST:     CTCTGTCGCCGCCGTTGCAGGGGAGGTCTTCTTCCAGGAGAAGTTCGAAG                         ATGGCTGGGAAAGTCGGTGGGTCAAGTCCGAGTGGAAGAAGGATGAGAACA
genomic: CTCTGTCGCCGCCGTTGCAGGGGAGGTCTTCTTCCAGGAGAAGTTCGAAGgtgattccct ... tgatggccagATGGCTGGGAAAGTCGGTGGGTCAAGTCCGAGTGGAAGAAGGATGAGAACA
EST: gi|211334357|gb|FL047796.1|FL047796
EST:     CTCTGTCGCCGCCGTTGCAGGGGAGGTCTTCTTCCAGGAGAAGTTCGAAG                         ATGGCTGGGAAAGTCGGTGGGTCAAGTCCGAGTGGAAGAAGGATGAGAACA
genomic: CTCTGTCGCCGCCGTTGCAGGGGAGGTCTTCTTCCAGGAGAAGTTCGAAGgtgattccct ... tgatggccagATGGCTGGGAAAGTCGGTGGGTCAAGTCCGAGTGGAAGAAGGATGAGAACA
EST: gi|211426205|gb|FL047857.1|FL047857
EST:     CTCTGTCGCCGCCGTTGCAGGGGAGGTCTTCTTCCAGGAGAAGTTCGAAG                         ATGGCTGGGAAAGTCGGTGGGTCAAGTCCGAGTGGAAGAAGGATGAGAACA
genomic: CTCTGTCGCCGCCGTTGCAGGGGAGGTCTTCTTCCAGGAGAAGTTCGAAGgtgattccct ... tgatggccagATGGCTGGGAAAGTCGGTGGGTCAAGTCCGAGTGGAAGAAGGATGAGAACA
EST: gi|19436441|gb|BM952851.1|BM952851
EST:     CTCTGTCGCCGCCGTCGCAGGGGAGGTCTTCTTCCAGGAGAAGTTCGAAG                         ATGGCTGGGAAAGTAGGTGGGTCAAGTCTGAGTGGAAGAAGGATGAGAACA
genomic: CTCTGTCGCCGCCGTTGCAGGGGAGGTCTTCTTCCAGGAGAAGTTCGAAGgtgattccct ... tgatggccagATGGCTGGGAAAGTCGGTGGGTCAAGTCCGAGTGGAAGAAGGATGAGAACA
EST: gi|211428784|gb|FL047861.1|FL047861
EST:     CTCTGTCGCCGCCGTTGCAGGGGAGGTCTTCTTCCAGGAGAAGTTCGAAG                         ATGGCTGGGAAAGTCGGTGGGTCAAGTCCGAGTGGAAGAAGGATGAGAACA
genomic: CTCTGTCGCCGCCGTTGCAGGGGAGGTCTTCTTCCAGGAGAAGTTCGAAGgtgattccct ... tgatggccagATGGCTGGGAAAGTCGGTGGGTCAAGTCCGAGTGGAAGAAGGATGAGAACA
EST: gi|18660890|gb|BM501102.1|BM501102
EST:     CTCTGTCGCCGCCGTTGCAGGGGAGGTCTTCTTCCAGGAGAAGTTCGAAG                         ATGGCTGGGAAAGTCGGTGGGTCAAGTCCGAGTGGAAGAAGGATGAGAACA
genomic: CTCTGTCGCCGCCGTTGCAGGGGAGGTCTTCTTCCAGGAGAAGTTCGAAGgtgattccct ... tgatggccagATGGCTGGGAAAGTCGGTGGGTCAAGTCCGAGTGGAAGAAGGATGAGAACA
EST: gi|211330011|gb|FL047754.1|FL047754
EST:     CTCTGTCGCCGCCGTTGCAGGGGAGGTCTTCTTCCAGGAGAAGTTCGAAG                         ATGGCTGGGAAAGTCGGTGGGTCAAGTCCGAGTGGAAGAAGGATGAGAACA
genomic: CTCTGTCGCCGCCGTTGCAGGGGAGGTCTTCTTCCAGGAGAAGTTCGAAGgtgattccct ... tgatggccagATGGCTGGGAAAGTCGGTGGGTCAAGTCCGAGTGGAAGAAGGATGAGAACA
EST: gi|211433998|gb|FL047902.1|FL047902
EST:     CTCTGTCGCCGCCGTCGCAGGGGAGGTCTTCTTCCAGGAGAAGTTCGAAG                         ATGGCTGGGAAAGTAGGTGGGTCAAGTCTGAGTGGAAGAAGGATGAGAACA
genomic: CTCTGTCGCCGCCGTTGCAGGGGAGGTCTTCTTCCAGGAGAAGTTCGAAGgtgattccct ... tgatggccagATGGCTGGGAAAGTCGGTGGGTCAAGTCCGAGTGGAAGAAGGATGAGAACA
EST: gi|22541975|gb|BU092413.1|BU092413
EST:     CTCTGTCGCCGCCG-CGCAGGGGAGGTCTTCTTCCAGGAGAAGTTCGAAG                         ATGGCTGGGAAAGTCGGTGGGTCAAGTCCGAGTGGAAGAAGGATGAGAACA
genomic: CTCTGTCGCCGCCGTTGCAGGGGAGGTCTTCTTCCAGGAGAAGTTCGAAGgtgattccct ... tgatggccagATGGCTGGGAAAGTCGGTGGGTCAAGTCCGAGTGGAAGAAGGATGAGAACA
EST: gi|211330022|gb|FL047765.1|FL047765
EST:     CTCTGTCGCCGCCGTTGCAGGGGAGGTCTTCTTCCAGGAGAAGTTCGAAG                         ATGGCTGGGAAAGTCGGTGGGTCAAGTCCGAGTGGAAGAAGGATTAGAACA
genomic: CTCTGTCGCCGCCGTTGCAGGGGAGGTCTTCTTCCAGGAGAAGTTCGAAGgtgattccct ... tgatggccagATGGCTGGGAAAGTCGGTGGGTCAAGTCCGAGTGGAAGAAGGATGAGAACA
EST: gi|211426197|gb|FL047849.1|FL047849
EST:     CTCTGTCGCCGCCGTTGCAGGGGAGGTCTTCTTCCAGGAGAAGTTCGAAG                         ATGGCTGGGAAAGTCGGTGGGTCAAGTCCGAGTGGAAGAAGGATGAGAACA
genomic: CTCTGTCGCCGCCGTTGCAGGGGAGGTCTTCTTCCAGGAGAAGTTCGAAGgtgattccct ... tgatggccagATGGCTGGGAAAGTCGGTGGGTCAAGTCCGAGTGGAAGAAGGATGAGAACA
EST: gi|32945103|gb|CF049922.1|CF049922
EST:     CTCTGTCGCCGCCGTCGCAGGGGAGGTCTTCTTCCAGGAGAAGTTCGAAG                         ATGGCTGGGAAAGTCGGTGGGTCAAGTCCGAGTGGAAGAAGGGTGAGAACA
genomic: CTCTGTCGCCGCCGTTGCAGGGGAGGTCTTCTTCCAGGAGAAGTTCGAAGgtgattccct ... tgatggccagATGGCTGGGAAAGTCGGTGGGTCAAGTCCGAGTGGAAGAAGGATGAGAACA
EST: gi|211327859|gb|FL047748.1|FL047748
EST:     CTCTGTCGCCGCCGTTGCAGGGGAGGTCTTCTTCCAGGAGAAGTTCGAAG                         ATGGCTGGGAAAGTCGGTGGGTCAAGTCCGAGTGGAAGAAGGATGAGAACA
genomic: CTCTGTCGCCGCCGTTGCAGGGGAGGTCTTCTTCCAGGAGAAGTTCGAAGgtgattccct ... tgatggccagATGGCTGGGAAAGTCGGTGGGTCAAGTCCGAGTGGAAGAAGGATGAGAACA
EST: gi|60339239|gb|DN206212.1|DN206212
EST:     CTCTGTCGCCGCCGTTGCAGGGGAGGTCTTCTTCCAGGAGAAGTTCGAAG                         ATGGCTGGGAAAGTCGGTGGGTCAAGTCCGAGTGGAAGAAGGATGAGAACA
genomic: CTCTGTCGCCGCCGTTGCAGGGGAGGTCTTCTTCCAGGAGAAGTTCGAAGgtgattccct ... tgatggccagATGGCTGGGAAAGTCGGTGGGTCAAGTCCGAGTGGAAGAAGGATGAGAACA
EST: gi|211334356|gb|FL047795.1|FL047795
EST:     CTCTGTCGCCGCCGTTGCAGGGGAGGTCTTCTTCCAGGAGAAGTTCGAAG                         ATGGCTGGGAAAGTCGGTGGGTCAAGTCCGAGTGGAAGAAGGATGAGAACA
genomic: CTCTGTCGCCGCCGTTGCAGGGGAGGTCTTCTTCCAGGAGAAGTTCGAAGgtgattccct ... tgatggccagATGGCTGGGAAAGTCGGTGGGTCAAGTCCGAGTGGAAGAAGGATGAGAACA
EST: gi|211332188|gb|FL047778.1|FL047778
EST:     CTCTGTCGCCGCCGTTGCAGGGGAGGTCTTCTTCCAGGAGAAGTTCGAAG                         ATGGCTGGGAAAGTCGGTGGGTCAAGTCCGAGTGGAAGAAGGATGAGAACA
genomic: CTCTGTCGCCGCCGTTGCAGGGGAGGTCTTCTTCCAGGAGAAGTTCGAAGgtgattccct ... tgatggccagATGGCTGGGAAAGTCGGTGGGTCAAGTCCGAGTGGAAGAAGGATGAGAACA
EST: gi|31558319|gb|CD527531.1|CD527531
EST:     CTCTGTCGCCGCCGTTGCAGGGGAGGTCTTCTTCCAGGAGAAGTTCGAAG                         ATGGCTGGGAAAGTCGGTGGGTCAAGTCCGAGTGGAAGAAGGATGAGAACA
genomic: CTCTGTCGCCGCCGTTGCAGGGGAGGTCTTCTTCCAGGAGAAGTTCGAAGgtgattccct ... tgatggccagATGGCTGGGAAAGTCGGTGGGTCAAGTCCGAGTGGAAGAAGGATGAGAACA
EST: gi|211431395|gb|FL047885.1|FL047885
EST:     CTCTGTCGCCGCCGTTGCAGGGGAGGTCTTCTTCCAGGAGAATTTCGAAG                         ATGGCTGGGAAAGTCGGTGGGTCAAGTCCGAGTGGAAGAAGGATGAGAACA
genomic: CTCTGTCGCCGCCGTTGCAGGGGAGGTCTTCTTCCAGGAGAAGTTCGAAGgtgattccct ... tgatggccagATGGCTGGGAAAGTCGGTGGGTCAAGTCCGAGTGGAAGAAGGATGAGAACA
EST: gi|211436585|gb|FL047903.1|FL047903
EST:     CTCTGTCGCCGCCGTTGCAGGGGAGGTCTTCTTCCAGGAGAAGTTCGAAG                         ATGGCTGGGAAAGTCGGTGGGTCAAGTCCGAGTGGAAGAAGGATGAGAACA
genomic: CTCTGTCGCCGCCGTTGCAGGGGAGGTCTTCTTCCAGGAGAAGTTCGAAGgtgattccct ... tgatggccagATGGCTGGGAAAGTCGGTGGGTCAAGTCCGAGTGGAAGAAGGATGAGAACA
EST: gi|211325688|gb|FL047736.1|FL047736
EST:     CTCTGTCGCCGCCGTTGCAGGGGAGGTCTTCTTCCAGGAGAAGTTCGAAG                         ATGGCTGGGAAAGTCGGTGGGTCAAGTCCGAGTGGAAGAAGGATGAGAACA
genomic: CTCTGTCGCCGCCGTTGCAGGGGAGGTCTTCTTCCAGGAGAAGTTCGAAGgtgattccct ... tgatggccagATGGCTGGGAAAGTCGGTGGGTCAAGTCCGAGTGGAAGAAGGATGAGAACA
EST: gi|211436594|gb|FL047912.1|FL047912
EST:     CTCTGTCGCCGCCGTTGCAGGGGAGGTCTTCTTCCAGGAGAAGTTCGAAG                         ATGGCTGGGAAAGTCGGTGGGTCAAGTCCGAGTGGAAGAAGGATGAGAACA
genomic: CTCTGTCGCCGCCGTTGCAGGGGAGGTCTTCTTCCAGGAGAAGTTCGAAGgtgattccct ... tgatggccagATGGCTGGGAAAGTCGGTGGGTCAAGTCCGAGTGGAAGAAGGATGAGAACA
EST: gi|211334349|gb|FL047788.1|FL047788
EST:     CTCTGTCGCCGCCGTTGCAGGGGAGGTCTTCTTCCAGGAGAAGTTCGAAG                         ATGGCTGCGAAAGTCGGTGGGTCAAGTCCGAGTGGAAGAAGGATGAGAACA
genomic: CTCTGTCGCCGCCGTTGCAGGGGAGGTCTTCTTCCAGGAGAAGTTCGAAGgtgattccct ... tgatggccagATGGCTGGGAAAGTCGGTGGGTCAAGTCCGAGTGGAAGAAGGATGAGAACA
EST: gi|211002997|gb|FL047939.1|FL047939
EST:     CTCTGTCGCCGCCGTTSCAGGGGAGGTCTTCTTCCAGGAGAAGTTCGAAG                         ATGGCTGGGAAAGTCGGTGGGTCAAGTCCCGAGTGGAAGAAGGATGAGAAC
genomic: CTCTGTCGCCGCCGTTGCAGGGGAGGTCTTCTTCCAGGAGAAGTTCGAAGgtgattccct ... tgatggccagATGGCTGGGAAAGTCGGTGGGTCAAGT-CCGAGTGGAAGAAGGATGAGAAC
EST: gi|211336514|gb|FL047807.1|FL047807
EST:     CTCTGTCGCCGCCGTTGCAGGGGAGGTCTTCTTCCAGGAGAAGTTCGAAG                         ATGGCTGGGAAAGTCGGTGGGTCAAGTCCGAGTGGAAGAAGGATGAGAACA
genomic: CTCTGTCGCCGCCGTTGCAGGGGAGGTCTTCTTCCAGGAGAAGTTCGAAGgtgattccct ... tgatggccagATGGCTGGGAAAGTCGGTGGGTCAAGTCCGAGTGGAAGAAGGATGAGAACA
EST: gi|28931363|gb|CB334724.1|CB334724
EST:     CTCTGTCGCCGCCGTTGCAGGGGAGGTCTTCTTCCAGGAGAAGTTCGAAG                         ATGGCTGGGAAAGTCGGTGGGTCAAGTCCGAGTGGAAGAAGGATGAGAACA
genomic: CTCTGTCGCCGCCGTTGCAGGGGAGGTCTTCTTCCAGGAGAAGTTCGAAGgtgattccct ... tgatggccagATGGCTGGGAAAGTCGGTGGGTCAAGTCCGAGTGGAAGAAGGATGAGAACA
EST: gi|21891719|gb|BQ744932.1|BQ744932
EST:     CTCTGTCGCCGCCGTCGCAGGGGAGGTCTTCTTCCAGGAGAAGTTCGAAG                         ATGGCTGGGAAAGTCGGTGGGTCAAGTCCGAGTGGAAGAAGGATGAGAACA
genomic: CTCTGTCGCCGCCGTTGCAGGGGAGGTCTTCTTCCAGGAGAAGTTCGAAGgtgattccct ... tgatggccagATGGCTGGGAAAGTCGGTGGGTCAAGTCCGAGTGGAAGAAGGATGAGAACA
EST: gi|211420976|gb|FL047815.1|FL047815
EST:     CTCTGTCGCCGCCGTTGCAGGGGAGGTCTTCTTCCAGGAGAAGTTCGAAG                         ATGGCTGGGAAAGTCGGTGGGTCAAGTCCGAGTGGAAGAAGGATGAGAACA
genomic: CTCTGTCGCCGCCGTTGCAGGGGAGGTCTTCTTCCAGGAGAAGTTCGAAGgtgattccct ... tgatggccagATGGCTGGGAAAGTCGGTGGGTCAAGTCCGAGTGGAAGAAGGATGAGAACA
EST: gi|211327862|gb|FL047751.1|FL047751
EST:     CTCTGTCGCCGCCGTTGCAGGGGAGGTCTTCTTCCAGGAGAAGTTCGAAG                         ATGGCTGGGAAAGTCGGTGGGTCAAGTCCGAGTGGAAGAAGGATGAGAACA
genomic: CTCTGTCGCCGCCGTTGCAGGGGAGGTCTTCTTCCAGGAGAAGTTCGAAGgtgattccct ... tgatggccagATGGCTGGGAAAGTCGGTGGGTCAAGTCCGAGTGGAAGAAGGATGAGAACA
EST: gi|211433994|gb|FL047898.1|FL047898
EST:     CTCTGTCGCCGCCGTTGCAGGGGAGGTCTTCTTCCAGGAGAAGTTCGAAG                         ATGGCTGGGAAAGTCGGTGGGTCAAGTCCGAGTGGAAGAAGGATTAGAACA
genomic: CTCTGTCGCCGCCGTTGCAGGGGAGGTCTTCTTCCAGGAGAAGTTCGAAGgtgattccct ... tgatggccagATGGCTGGGAAAGTCGGTGGGTCAAGTCCGAGTGGAAGAAGGATGAGAACA
EST: gi|211428787|gb|FL047864.1|FL047864
EST:     CTCTGTCGCCGCCGTTGCAGGGGAGGTCTTCTTCCAGGAGAAGTTCGAAG                         ATGGCTGGGAAAGTCGGTGGGTCAAGTCCGAGTGGAAGAAGGATGAGAACA
genomic: CTCTGTCGCCGCCGTTGCAGGGGAGGTCTTCTTCCAGGAGAAGTTCGAAGgtgattccct ... tgatggccagATGGCTGGGAAAGTCGGTGGGTCAAGTCCGAGTGGAAGAAGGATGAGAACA
EST: gi|211420974|gb|FL047813.1|FL047813
EST:     CTCTGTCGCCGCCGTTGCAGGGGAGGTCTTCTTCCAGGAGAAGTTCGAAG                         ATGGCTGGGAAAGTCGGTGGGTCAAGTCCGAGTGGAAGAAGGATGAGAACA
genomic: CTCTGTCGCCGCCGTTGCAGGGGAGGTCTTCTTCCAGGAGAAGTTCGAAGgtgattccct ... tgatggccagATGGCTGGGAAAGTCGGTGGGTCAAGTCCGAGTGGAAGAAGGATGAGAACA
EST: gi|211433987|gb|FL047891.1|FL047891
EST:     CTCTGTCGCCGCCGTTGCAGGGGAGGTCTTCTTCCAGGAGAAGTTCGAAG                         ATGGCTGGGAAAGTCGGTGGGTCAAGTCCGAGTGGAAGAAGGATGAGAACA
genomic: CTCTGTCGCCGCCGTTGCAGGGGAGGTCTTCTTCCAGGAGAAGTTCGAAGgtgattccct ... tgatggccagATGGCTGGGAAAGTCGGTGGGTCAAGTCCGAGTGGAAGAAGGATGAGAACA
EST: gi|6827097|gb|AW330740.1|AW330740
EST:     CTCTGTCGCCGCCGTCGCAGGGGAGGTCTTCTTCCAGGAGAAGTTCGAAG                         ATGGCTGGGAAAGTCGGTGGGTCAAGTCCGAGTGGAAGAAGGATGAGAACA
genomic: CTCTGTCGCCGCCGTTGCAGGGGAGGTCTTCTTCCAGGAGAAGTTCGAAGgtgattccct ... tgatggccagATGGCTGGGAAAGTCGGTGGGTCAAGTCCGAGTGGAAGAAGGATGAGAACA
EST: gi|211436588|gb|FL047906.1|FL047906
EST:     CTCTGTCGCCGCCGTTGCAGGGGAGGTCTTCTTCCAGGAGAAGTTCGAAG                         ATGGCTGGGAAAGTCGGTGGGTCAAGTCCGAGTGGAAGAAGGATGAGAACA
genomic: CTCTGTCGCCGCCGTTGCAGGGGAGGTCTTCTTCCAGGAGAAGTTCGAAGgtgattccct ... tgatggccagATGGCTGGGAAAGTCGGTGGGTCAAGTCCGAGTGGAAGAAGGATGAGAACA
EST: gi|211431385|gb|FL047875.1|FL047875
EST:     CTCTGTCGCCGCCGTTGCAGGGGAGGTCTTCTTCCAGGAGAAGTTCGAAG                         ATGGCTGGGAAAGTCGGTGGGTCAAGTCCGAGTGGAAGAAGGATGAGAACA
genomic: CTCTGTCGCCGCCGTTGCAGGGGAGGTCTTCTTCCAGGAGAAGTTCGAAGgtgattccct ... tgatggccagATGGCTGGGAAAGTCGGTGGGTCAAGTCCGAGTGGAAGAAGGATGAGAACA
EST: gi|148931876|gb|EC877340.2|EC877340
EST:     CTCTGTCGCCGCCGTTGCAGGGGAGGTCTTCTTCCAGGAGAAGTTCGAAG                         ATGGCTGGGAAAGTCGGTGGGTCAAGTCCGAGTGGAAGAAGGATGAGAACA
genomic: CTCTGTCGCCGCCGTTGCAGGGGAGGTCTTCTTCCAGGAGAAGTTCGAAGgtgattccct ... tgatggccagATGGCTGGGAAAGTCGGTGGGTCAAGTCCGAGTGGAAGAAGGATGAGAACA
EST: gi|56691550|gb|CX129453.1|CX129453
EST:     CTCTGTCGCCGCCGTCGCAGGGGAGGTCTTCTTCCAGGAGAAGTTCGAAG                         ATGGCTGGGAAAGTCGGTGGGTCAAGTCCGAGTGGAAGAAGGATGAGAACA
genomic: CTCTGTCGCCGCCGTTGCAGGGGAGGTCTTCTTCCAGGAGAAGTTCGAAGgtgattccct ... tgatggccagATGGCTGGGAAAGTCGGTGGGTCAAGTCCGAGTGGAAGAAGGATGAGAACA
EST: gi|60339445|gb|DN206418.1|DN206418
EST:     CTCTGTCGCCGCCGTTGCAGGGGAGGTCTTCTTCCAGGAGAAGTTCGAAG                         ATGGCTGGGAAAGTCGGTGGGTCAAGTCCGAGTGGAAGAAGGATGAGAACA
genomic: CTCTGTCGCCGCCGTTGCAGGGGAGGTCTTCTTCCAGGAGAAGTTCGAAGgtgattccct ... tgatggccagATGGCTGGGAAAGTCGGTGGGTCAAGTCCGAGTGGAAGAAGGATGAGAACA
EST: gi|211330010|gb|FL047753.1|FL047753
EST:     CTCTGTCGCCGCCGTTGCAGGGGAGGTCTTCTTCCAGGAGAAGTTCGAAG                         ATGGCTGGGAAAGTCGGTGGGTCAAGTCCGAGTGGAAGAAGGATGAGAACA
genomic: CTCTGTCGCCGCCGTTGCAGGGGAGGTCTTCTTCCAGGAGAAGTTCGAAGgtgattccct ... tgatggccagATGGCTGGGAAAGTCGGTGGGTCAAGTCCGAGTGGAAGAAGGATGAGAACA
EST: gi|211423584|gb|FL047838.1|FL047838
EST:     CTCTGTCGCCGCCGTCGCAGGGGAGGTCTTCTTCCAGGAGAAGTTCGAAG                         ATGGCTGGGAAAGTAGGTGGGTCAAGTCTGAGTGGAAGAAGGATGAGAACA
genomic: CTCTGTCGCCGCCGTTGCAGGGGAGGTCTTCTTCCAGGAGAAGTTCGAAGgtgattccct ... tgatggccagATGGCTGGGAAAGTCGGTGGGTCAAGTCCGAGTGGAAGAAGGATGAGAACA
EST: gi|211336508|gb|FL047801.1|FL047801
EST:     CTCTGTCGCCGCCGTTGCAGGGGAGGTCTTCTTMCAGGAGAAGTTCGAAG                         ATGGCTGGGAAAGTCGGTGGGTCAAGTCCGAGTGGAAGAAGGATGAGAACA
genomic: CTCTGTCGCCGCCGTTGCAGGGGAGGTCTTCTTCCAGGAGAAGTTCGAAGgtgattccct ... tgatggccagATGGCTGGGAAAGTCGGTGGGTCAAGTCCGAGTGGAAGAAGGATGAGAACA
EST: gi|32912493|gb|CF017305.1|CF017305
EST:     CTCTGTCGCCGCCGTCGCAGGGGAGGTCTTCTTCCAGGAGAAGTTCGAAG                         ATGGCTGGGAAAGTCGGTGGGTCAAGTCCGAGTGGAAGAAGGATGAGAACA
genomic: CTCTGTCGCCGCCGTTGCAGGGGAGGTCTTCTTCCAGGAGAAGTTCGAAGgtgattccct ... tgatggccagATGGCTGGGAAAGTCGGTGGGTCAAGTCCGAGTGGAAGAAGGATGAGAACA
EST: gi|211428791|gb|FL047868.1|FL047868
EST:     CTCTGTCGCCGCCGTTGCAGGGGAGGTCTTCTTCCAGGAGAAGTTCGAAG                         ATGGCTGGGAAAGTCGGTGGGTCAAGTCCGAGTGGAAGAAGGATGAGAACA
genomic: CTCTGTCGCCGCCGTTGCAGGGGAGGTCTTCTTCCAGGAGAAGTTCGAAGgtgattccct ... tgatggccagATGGCTGGGAAAGTCGGTGGGTCAAGTCCGAGTGGAAGAAGGATGAGAACA
EST: gi|148937047|gb|EC881220.2|EC881220
EST:     CTCTGTCGCCGCCGTTGCAGGGGAGGTCTTCTTCCAGGAGAAGTTCGAAG                         ATGGCTGGGAAAGTCGGTGGGTCAAGTCCGAGTGGAAGAAGGATGAGAACA
genomic: CTCTGTCGCCGCCGTTGCAGGGGAGGTCTTCTTCCAGGAGAAGTTCGAAGgtgattccct ... tgatggccagATGGCTGGGAAAGTCGGTGGGTCAAGTCCGAGTGGAAGAAGGATGAGAACA
EST: gi|71442156|gb|DR823206.1|DR823206
EST:     CTCTGTCGCCGCCGTTGCAGGGGAGGTCTTCTTCCAGGAGAAGTTCGAAG                         ATGGCTGGGAAAGTCGGTGGGTCAAGTCCGAGTGGAAGAAGGATGAGAACA
genomic: CTCTGTCGCCGCCGTTGCAGGGGAGGTCTTCTTCCAGGAGAAGTTCGAAGgtgattccct ... tgatggccagATGGCTGGGAAAGTCGGTGGGTCAAGTCCGAGTGGAAGAAGGATGAGAACA
EST: gi|211439185|gb|FL047923.1|FL047923
EST:     CTCTGTCGCCGCCGTCGCAGGGGAGGTCTTCTTCCAGGAGAAGTTCGAAG                         ATGGCTGGGAAAGTAGGTGGGTCAAGTCTGAGTGGAAGAAGGATGAGAACA
genomic: CTCTGTCGCCGCCGTTGCAGGGGAGGTCTTCTTCCAGGAGAAGTTCGAAGgtgattccct ... tgatggccagATGGCTGGGAAAGTCGGTGGGTCAAGTCCGAGTGGAAGAAGGATGAGAACA
EST: gi|21809965|gb|BQ668283.1|BQ668283
EST:     CTCTGTCGCCGCCGTCGCAGGGGAGGTCTTCTTCCAGGAGAAGTTCGAAG                         ATGGCTGGGAAAGTCGGTGGGTCAAGTCCGAGTGGAAGAAGGATGAGAACA
genomic: CTCTGTCGCCGCCGTTGCAGGGGAGGTCTTCTTCCAGGAGAAGTTCGAAGgtgattccct ... tgatggccagATGGCTGGGAAAGTCGGTGGGTCAAGTCCGAGTGGAAGAAGGATGAGAACA
EST: gi|211334345|gb|FL047784.1|FL047784
EST:     CTCTGTCGCCGCCGTTGCAGGGGAGGTCTTCTTCCAGGAGAAGTTCGAAG                         ATGGCTGGGAAAGTCGGTGGGTCAAGTCCGAGTGGAAGAAGGATGAGAACA
genomic: CTCTGTCGCCGCCGTTGCAGGGGAGGTCTTCTTCCAGGAGAAGTTCGAAGgtgattccct ... tgatggccagATGGCTGGGAAAGTCGGTGGGTCAAGTCCGAGTGGAAGAAGGATGAGAACA
EST: gi|22472399|gb|BU036879.1|BU036879
EST:     CTCTGTCGCCGCCGTCGCAGGGGAGGTCTTCTTCCAGGAGAAGTTCGAAG                         ATGGCTGGGAAAGTCGGTGGGTCAAGTCCGAGTGGAAGAAGGATGAGAACA
genomic: CTCTGTCGCCGCCGTTGCAGGGGAGGTCTTCTTCCAGGAGAAGTTCGAAGgtgattccct ... tgatggccagATGGCTGGGAAAGTCGGTGGGTCAAGTCCGAGTGGAAGAAGGATGAGAACA
EST: gi|87157487|gb|DY402276.1|DY402276
EST:     CTCTGTCGCCGCCGTCGCAGGGGAGGTCTTCTTCCAGGAGAAGTTCGAAG                         ATGGCTGGGAAAGTCGGTGGGTCAAGTCCGAGTGGAAGAAGGATGAGAACA
genomic: CTCTGTCGCCGCCGTTGCAGGGGAGGTCTTCTTCCAGGAGAAGTTCGAAGgtgattccct ... tgatggccagATGGCTGGGAAAGTCGGTGGGTCAAGTCCGAGTGGAAGAAGGATGAGAACA
EST: gi|211428794|gb|FL047871.1|FL047871
EST:     CTCTGTCGCCGCCGTCGCAGGGGAGGTCTTCTTCCAGGAGAAGTTCGAAG                         ATGGCTGGGAAAGTAGGTGGGTCAAGTCTGAGTGGAAGAAGGATGAGAACA
genomic: CTCTGTCGCCGCCGTTGCAGGGGAGGTCTTCTTCCAGGAGAAGTTCGAAGgtgattccct ... tgatggccagATGGCTGGGAAAGTCGGTGGGTCAAGTCCGAGTGGAAGAAGGATGAGAACA
EST: gi|211336509|gb|FL047802.1|FL047802
EST:     CTCTGTCGCCGCCGTTGCAGGGGAGGTCTTCTTCCAGGAGAAGTTCGAAG                         ATGGCTGGGAAAGTCGGTGGGTCAAGTCCGAGTGGAAGAAGGATGAGAACA
genomic: CTCTGTCGCCGCCGTTGCAGGGGAGGTCTTCTTCCAGGAGAAGTTCGAAGgtgattccct ... tgatggccagATGGCTGGGAAAGTCGGTGGGTCAAGTCCGAGTGGAAGAAGGATGAGAACA
EST: gi|211002998|gb|FL047940.1|FL047940
EST:     CTCTGTCGCCGCCGTTGCAGGGGAGGTCTTCTTCCAGGAGAAGTTCGAAG                         ATGGCTGGGAAAGTCGGTGGGTCAAGTCCGAGTGGAAGAAGGATGAGAACA
genomic: CTCTGTCGCCGCCGTTGCAGGGGAGGTCTTCTTCCAGGAGAAGTTCGAAGgtgattccct ... tgatggccagATGGCTGGGAAAGTCGGTGGGTCAAGTCCGAGTGGAAGAAGGATGAGAACA

RNA-Seq data


 ATGC   Supported by RNA-Seq exonic block that spans over the splice site

 atgs   Truncated intron sequence

Each block is as long as the maximal overhang of any read spanning the junction.
The score is the number of alignments spanning the junction.


Found data for 4 RNA-Seq libraries.


Block sizes: 49 (upstream exon), 49 (downstream exon)
Score: 332

GCGATCCGCAAGGGGTCTTCGTACGCCGTCGCGGCACTTCTCGCGCTCGCCTCTGTCGCCGCCGTTGCAGGGGAGGTCTTCTTCCAGGAGAAGTTCGAAGgtgattccct ... tgatggccagATGGCTGGGAAAGTCGGTGGGTCAAGTCCGAGTGGAAGAAGGATGAGAACATGGCTGGTGAATGGAACCACACCTCGGGAAAATGGAATGGAGATGCCGA


Block sizes: 49 (upstream exon), 49 (downstream exon)
Score: 348

GCGATCCGCAAGGGGTCTTCGTACGCCGTCGCGGCACTTCTCGCGCTCGCCTCTGTCGCCGCCGTTGCAGGGGAGGTCTTCTTCCAGGAGAAGTTCGAAGgtgattccct ... tgatggccagATGGCTGGGAAAGTCGGTGGGTCAAGTCCGAGTGGAAGAAGGATGAGAACATGGCTGGTGAATGGAACCACACCTCGGGAAAATGGAATGGAGATGCCGA


Block sizes: 49 (upstream exon), 49 (downstream exon)
Score: 141

GCGATCCGCAAGGGGTCTTCGTACGCCGTCGCGGCACTTCTCGCGCTCGCCTCTGTCGCCGCCGTTGCAGGGGAGGTCTTCTTCCAGGAGAAGTTCGAAGgtgattccct ... tgatggccagATGGCTGGGAAAGTCGGTGGGTCAAGTCCGAGTGGAAGAAGGATGAGAACATGGCTGGTGAATGGAACCACACCTCGGGAAAATGGAATGGAGATGCCGA


Block sizes: 49 (upstream exon), 49 (downstream exon)
Score: 524

GCGATCCGCAAGGGGTCTTCGTACGCCGTCGCGGCACTTCTCGCGCTCGCCTCTGTCGCCGCCGTTGCAGGGGAGGTCTTCTTCCAGGAGAAGTTCGAAGgtgattccct ... tgatggccagATGGCTGGGAAAGTCGGTGGGTCAAGTCCGAGTGGAAGAAGGATGAGAACATGGCTGGTGAATGGAACCACACCTCGGGAAAATGGAATGGAGATGCCGA




 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

attttgtaattttgacattacccttcatgacattttgcactgttgtgatggccagATGGCTGGGAAAGTCGGTGGGTCAAGTCCGAGTGGAAGAAGGATGAGAACATGGCTGGTGAATGGAACCACACCTCGGGAAAATGGAATGGAGATGCCGA
         ttttgac  putative branch site (score: 524)
      taattttgacatta  TA-rich tract
















Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
        10        20        30        40        50        60        70        80        90        100       110       120       130       140       150       160       170       180       190       200       210       220 
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
ataggatctccaatactgactgtcagttttgttgtaccacgaagcattttgtaattttgacattacccttcatgacattttgcactgttgtgatggccagATGGCTGGGAAAGTCGGTGGGTCAAGTCCGAGTGGAAGAAGGATGAGAACATGGCTGGTGAATGGAACCACACCTCGGGAAAATGGAATGGAGATGCCGA

- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGGAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -  GGAGAT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGATG
- - - - - - - -ctgactg
- - - - - - - - - - - - - -tttgttg
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -ttttgca