1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' |
...acgcagtaccttgtatctcaaatcacaagcaatgaaagaaatatcatcattcctttatgcacgtaaagtcacatcagctttccattctttcttctcgcagGAAAAAATCCGGCTTGCCCTCTATGTGCAGAAGGCTGCCATGACCTTCATTGATG
species | Zea mays |
transcript | GRMZM2G357620_T01 |
intron # | 1 |
splice site | 3' |
intron type | U2 |
EST: CGGACCTCCACCGGCGCAGCCTGGACGAGGCCCAGCGGCGGTCCACCCAG GAAAAAATCCGGCTTGCCCTCTATGTGCAGAAGGCTGCCATGACCTTCATTEST: gi|18963564|gb|BM660506.1|BM660506
genomic: CGGACCTCCACCGCCGCAGCCTGGACGAGGCCCAGCGGCGGTCCACCCAGgtatacgcgc ... cttctcgcagGAAAAAATCCGGCTTGCCCTCTATGTGCAGAAGGCTGCCATGACCTTCATT
EST: CGGACCTCCACCGCCGCAGCCTGGACGAGGCCCAGCGGCGGTCCACCCAG GAAAAAATCCGGCTTGCCCTCTATGTGCAGAAGGCTGCCATGACCTTCATTEST: gi|87151779|gb|DY396568.1|DY396568
genomic: CGGACCTCCACCGCCGCAGCCTGGACGAGGCCCAGCGGCGGTCCACCCAGgtatacgcgc ... cttctcgcagGAAAAAATCCGGCTTGCCCTCTATGTGCAGAAGGCTGCCATGACCTTCATT
EST: CGGACCTCCACCGCCGCAGCCTGGACGAGGCCCAGCGGCGGTCCACCCAG GAAAAAATCCGGCTTGCCCTCTATGTGCAGAAGGCTGCCATGACCTTCATTEST: gi|18963566|gb|BM660507.1|BM660507
genomic: CGGACCTCCACCGCCGCAGCCTGGACGAGGCCCAGCGGCGGTCCACCCAGgtatacgcgc ... cttctcgcagGAAAAAATCCGGCTTGCCCTCTATGTGCAGAAGGCTGCCATGACCTTCATT
EST: AGCCTGGACGAGGCCCAGCGGCGGTCCACCCAG GAAAAAATCCGGCTTGCCCTCTATGTGCAGAAGGCTGCCATGACCTTCATT
genomic: AGCCTGGACGAGGCCCAGCGGCGGTCCACCCAGgtatacgcgc ... cttctcgcagGAAAAAATCCGGCTTGCCCTCTATGTGCAGAAGGCTGCCATGACCTTCATT
atcattcctttatgcacgtaaagtcacatcagctttccattctttcttctcgcagGAAAAAATCCGGCTTGCCCTCTATGTGCAGAAGGCTGCCATGACCTTCATTGATG
tcagctttccattctt CT-rich tract
attcttt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| acgcagtaccttgtatctcaaatcacaagcaatgaaagaaatatcatcattcctttatgcacgtaaagtcacatcagctttccattctttcttctcgcagGAAAAAATCCGGCTTGCCCTCTATGTGCAGAAGGCTGCCATGACCTTCATTGATG
- gcagtac
- - - - -cttgtat
- - - - - - - - - - - - -caagcaa
- - - - - - - - - - - - - - - - - aaagaaa
- - - - - - - - - - - - - - - - - - - - - - - -cattcct
- - - - - - - - - - - - - - - - - - - - - - - - - - - - atgcacg