1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' |
gtcgggatcttggctcagtttctagatggtttgaattctttccatccagcaggttttggtgttgaagagaggctatctttgtttgcgaatgcagTGCTGCGCGTGTTGCTGGAGGTGAGTTTTCACCTCCTCCGCGTTCTTCTTCACCGCCAAAGGCCCAAGAGGAATTTCGATTGGTTGAAGCGCGAATCCGC
species | Zea mays |
transcript | GRMZM2G355636_T01 |
intron # | 1 |
splice site | 3' |
intron type | U2 |
EST: CGTCATTCCTTTGCAGCCTCTCCTTCGCAGCAGAATCCGCGTGGAACAAG TGCTGCGCGTGTTGCTGGAGGTGAGTTTTCACCTCCTCCGCGTTCTTCTTCEST: gi|211391818|gb|FL466834.1|FL466834
genomic: CGTCATTCCTTTGCAGCCTCTCCTTCGCAGCAGAATCCGCGTGGAACAAGgtcgggatct ... gcgaatgcagTGCTGCGCGTGTTGCTGGAGGTGAGTTTTCACCTCCTCCGCGTTCTTCTTC
EST: TCGCAGCAGAATCCGCGTGGAACAAG TGCTGCGCGTGTTGCTGGAGGTGAGTTTTCACCTCCTCCGCGTTCTTCTTCEST: gi|78091058|gb|DV519432.1|DV519432
genomic: TCGCAGCAGAATCCGCGTGGAACAAGgtcgggatct ... gcgaatgcagTGCTGCGCGTGTTGCTGGAGGTGAGTTTTCACCTCCTCCGCGTTCTTCTTC
EST: CGTCATTCCTTTGCAGCCTCTCCTTCGCAGCAGAATCCGCGTGGAACAAG TGCTGCGCGTGTTGCTGGAGGTGAGTTTTCACCTCCTCCGCGTTCTTCTTC
genomic: CGTCATTCCTTTGCAGCCTCTCCTTCGCAGCAGAATCCGCGTGGAACAAGgtcgggatct ... gcgaatgcagTGCTGCGCGTGTTGCTGGAGGTGAGTTTTCACCTCCTCCGCGTTCTTCTTC
ttccatccagcaggttttggtgttgaagagaggctatctttgtttgcgaatgcagTGCTGCGCGTGTTGCTGGAGGTGAGTTTTCACCTCCTCCGCGTTCTTCTTCACCGCCAAAGGCCCAAGAGGAATTTCGATTGGTTGAAGCGCGAATCCGC
tatcttt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtcgggatcttggctcagtttctagatggtttgaattctttccatccagcaggttttggtgttgaagagaggctatctttgtttgcgaatgcagTGCTGCGCGTGTTGCTGGAGGTGAGTTTTCACCTCCTCCGCGTTCTTCTTCACCGCCAAAGGCCCAAGAGGAATTTCGATTGGTTGAAGCGCGAATCCGC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAGG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGAGGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TTGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGAAGC