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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

...tctttccctccccggccgagttaacatgaataactgtattgttttaaatatgtccatttgttaaaattaattaactgctgcctttttctggcttgatcagGAACATCTTTCATCTATTAACTCAACGAGAGGTCTTACCTCGAACGAAACACCATGCTAAAAGGATATGGAATAACTCTCCAAAATATGATCCTCATTTA

Basic information

species Zea mays
transcript GRMZM2G353548_T04
intron # 1
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GRMZM2G353548_T04 (Zea mays), 3'ss of exon 1
lower sequence: LOC_Os02g18820.1 (Oryza sativa), 3'ss of exon 2
--tctttccctccccggccgagttaacatgaataactgtattgttttaa-atatgtccatttgttaaaattaattaactgctgcctttttctggcttgatcagGAACATCTTTCATCTATTAACTCAACGAGAGGTCTTACCTCGAACGAAACACCATGCTAAAAGGATATGGAATAACTCTCCAAAATATGATCCTCATTTA
      |       |        |||| ||  |     |    || ||| ||  |  || ||||||||  ||  ||||   ||  ||   |    ||| |||||||||||||  |||||||| |||| |||||| | |  |||||||| |||||||| |||||||   | ||||  || ||||||  | ||||| || |||  
ggataatataaaaacattttcagtaacctgttttctaatggcattataatatgagatcacttgttaaatata--taacctttggtttgcccattattg-tcagGAACATCTTCGATCTATTAGCTCAGCGAGAGATTTCCCCTCGAACAAAACACCAAGCTAAAAAACTTTGGAGCAAATCTCCAGGAAATGATGCTGATTCC
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|28873754|gb|CB329699.1|CB329699
EST:     CTCGATGCGCAAATCCTGGAGCCTCAGCGACAGAGATCGAATCCATTCAG                         GAACATCTTTCATCTATTAACTCAACGAGAGGTCTTACCTCGAACGAAACA
genomic: CTCGATGCGCAAATCCTGGAGCCTCAGCGACAGAGATCGAATCCATTCAGgtacccttca ... gcttgatcagGAACATCTTTCATCTATTAACTCAACGAGAGGTCTTACCTCGAACGAAACA
EST: gi|76283296|gb|DV022864.1|DV022864
EST:     CTCGATGCGCAAATCCTGGAGCCTCAGCGACAGAGATCGAATCCATTCAG                         GAACATCTTTCATCTATTAACTCAACGAGAGGTCTTACCTCGAACGAAACA
genomic: CTCGATGCGCAAATCCTGGAGCCTCAGCGACAGAGATCGAATCCATTCAGgtacccttca ... gcttgatcagGAACATCTTTCATCTATTAACTCAACGAGAGGTCTTACCTCGAACGAAACA
EST: gi|78106525|gb|DV524943.1|DV524943
EST:     CTCGATGCGCAAATCCTGGAGCCTCAGCGACAGAGATCGAATCCATTCAG                         GAACATCTTTCATCTATTAACTCAACGAGAGGTCTTACCTCGAACGAAACA
genomic: CTCGATGCGCAAATCCTGGAGCCTCAGCGACAGAGATCGAATCCATTCAGgtacccttca ... gcttgatcagGAACATCTTTCATCTATTAACTCAACGAGAGGTCTTACCTCGAACGAAACA


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

aaatatgtccatttgttaaaattaattaactgctgcctttttctggcttgatcagGAACATCTTTCATCTATTAACTCAACGAGAGGTCTTACCTCGAACGAAACACCATGCTAAAAGGATATGGAATAACTCTCCAAAATATGATCCTCATTTA
                       aattaac  putative branch site (score: 2)
                                   cctttttctggctt  putative PPT
          atttgttaaaattaat  TA-rich tract