1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' | 12 5' 3' | 13 5' 3' | 14 5' 3' |
...gctgatgagtagagttcagaatggtgtcgcttgttcccatttctattcgtgtagtctattttattctgatataactaagtaaaaacgttcattacatcagTTTTCGAGGGATTGAGAGCAAAAGGCTTTGCAAGCATGTCATCTTCGACTGGCAATGAGAATATGTCTACTGGAACTGGTACACTACCTCCCATGCCACC
species | Zea mays |
transcript | GRMZM2G353213_T02 |
intron # | 1 |
splice site | 3' |
intron type | U2 |
EST: GCCCAGGCTCTTCGTTGCCGCGGCGGCGGCTCCTCGCGGCTCCGGAAACG TTTTCGAGGGATTGAGAGCAAAAGGCTTTGCAAGCATGTCATCTTCGACTGEST: gi|148945681|gb|EC890953.2|EC890953
genomic: GCCCAGGCTCTTCGTTGCCGCGGCGGCGGCTCCTCGCGGCTCCGGAAACGgtgaggggat ... attacatcagTTTTCGAGGGATTGAGAGCAAAAGGCTTTGCAAGCATGTCATCTTCGACTG
EST: GCCCAGGCTCTTCGTTGCCGCGGCGGCGGCTCCTCGCGGCTCCGGAAACG TTTTCGAGGGATTGAGAGCAAAAGGCTTTGCAAGCATGTCATCTTCGACTGEST: gi|211025075|gb|FL063423.1|FL063423
genomic: GCCCAGGCTCTTCGTTGCCGCGGCGGCGGCTCCTCGCGGCTCCGGAAACGgtgaggggat ... attacatcagTTTTCGAGGGATTGAGAGCAAAAGGCTTTGCAAGCATGTCATCTTCGACTG
EST: GCCCAGGCTCTTCGTTGCCGCGGCGGCGGCTCCTCGCGGCTCCGGAAACG TTTTCGAGGGATTGAGAGCAAAAGGCTTTGCAAGCATGTCATCTTCGACTGEST: gi|71775481|gb|DR973359.1|DR973359
genomic: GCCCAGGCTCTTCGTTGCCGCGGCGGCGGCTCCTCGCGGCTCCGGAAACGgtgaggggat ... attacatcagTTTTCGAGGGATTGAGAGCAAAAGGCTTTGCAAGCATGTCATCTTCGACTG
EST: GCCCAGGCTCTTCGTTGCCGCGGCGGCGGCTCCTCGCGGCTCCGGAAACG TTTTCGAGGGATTGAGAGCAAAAGGCTTTGCAAGCATGTCATCTTCGACTGEST: gi|211025069|gb|FL063417.1|FL063417
genomic: GCCCAGGCTCTTCGTTGCCGCGGCGGCGGCTCCTCGCGGCTCCGGAAACGgtgaggggat ... attacatcagTTTTCGAGGGATTGAGAGCAAAAGGCTTTGCAAGCATGTCATCTTCGACTG
EST: GCCCAGGCTCTTCGTTGCCGCGGCGGCGGCTCCTCGCGGCTCCGGAAACG TTTTCGAGGGATTGAGAGCAAAAGGCTTTGCAAGCATGTCATCTTCGACTGEST: gi|71448507|gb|DR829557.1|DR829557
genomic: GCCCAGGCTCTTCGTTGCCGCGGCGGCGGCTCCTCGCGGCTCCGGAAACGgtgaggggat ... attacatcagTTTTCGAGGGATTGAGAGCAAAAGGCTTTGCAAGCATGTCATCTTCGACTG
EST: GCCCAGGCTCTTCGTTGCCGCGGCGGCGGCTCCTCGCGGCTCCGGAAACG TTTTCGAGGGATTGAGAGCAAAAGGCTTTGCAAGCATGTCATCTTCGACTGEST: gi|91055447|gb|EB165865.1|EB165865
genomic: GCCCAGGCTCTTCGTTGCCGCGGCGGCGGCTCCTCGCGGCTCCGGAAACGgtgaggggat ... attacatcagTTTTCGAGGGATTGAGAGCAAAAGGCTTTGCAAGCATGTCATCTTCGACTG
EST: GCCCAGGCTCTTCGTTGCCGCGGCGGCGGCTCCTCGCGGCTCCGGAAACG TTTTCGAGGGATTGAGAGCAAAAGGCTTTGCAAGCATGTCATCTTCGACTGEST: gi|211025064|gb|FL063412.1|FL063412
genomic: GCCCAGGCTCTTCGTTGCCGCGGCGGCGGCTCCTCGCGGCTCCGGAAACGgtgaggggat ... attacatcagTTTTCGAGGGATTGAGAGCAAAAGGCTTTGCAAGCATGTCATCTTCGACTG
EST: GCCCAGGCTCTTCGTTGCCGCGGCGGCGGCTCCTCGCGGCTCCGGAAACG TTTTCGAGGGATTGAGAGCAAAAGGCTTTGCAAGCATGTCATCTTCGACTGEST: gi|149109665|gb|EE293452.2|EE293452
genomic: GCCCAGGCTCTTCGTTGCCGCGGCGGCGGCTCCTCGCGGCTCCGGAAACGgtgaggggat ... attacatcagTTTTCGAGGGATTGAGAGCAAAAGGCTTTGCAAGCATGTCATCTTCGACTG
EST: GCCCAGGCTCTTCGTTGCCGCGGCGGCGGCTCCTCGCGGCTCCGGAAACG TTTTCGAGGGATTGAGAGCAAAAGGCTTTGCAAGCATGTCATCTTCGACTGEST: gi|211025068|gb|FL063416.1|FL063416
genomic: GCCCAGGCTCTTCGTTGCCGCGGCGGCGGCTCCTCGCGGCTCCGGAAACGgtgaggggat ... attacatcagTTTTCGAGGGATTGAGAGCAAAAGGCTTTGCAAGCATGTCATCTTCGACTG
EST: GCCCAGGCTCTTCGTTGCCGCGGCGGCGGCTCCTCGCGGCTCCGGAAACG TTTTCGAGGGATTGAGAGCAAAAGGCTTTGCAAGCATGTCATCTTCGACTG
genomic: GCCCAGGCTCTTCGTTGCCGCGGCGGCGGCTCCTCGCGGCTCCGGAAACGgtgaggggat ... attacatcagTTTTCGAGGGATTGAGAGCAAAAGGCTTTGCAAGCATGTCATCTTCGACTG
ttcgtgtagtctattttattctgatataactaagtaaaaacgttcattacatcagTTTTCGAGGGATTGAGAGCAAAAGGCTTTGCAAGCATGTCATCTTCGACTGGCAATGAGAATATGTCTACTGGAACTGGTACACTACCTCCCATGCCACC
atataac putative branch site (score: 39)
tattttattctgatat TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gctgatgagtagagttcagaatggtgtcgcttgttcccatttctattcgtgtagtctattttattctgatataactaagtaaaaacgttcattacatcagTTTTCGAGGGATTGAGAGCAAAAGGCTTTGCAAGCATGTCATCTTCGACTGGCAATGAGAATATGTCTACTGGAACTGGTACACTACCTCCCATGCCACC
gctgatg
- - - - - - - - - - - - tgtcgct
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - aagtaaaa