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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

...gctgatgagtagagttcagaatggtgtcgcttgttcccatttctattcgtgtagtctattttattctgatataactaagtaaaaacgttcattacatcagTTTTCGAGGGATTGAGAGCAAAAGGCTTTGCAAGCATGTCATCTTCGACTGGCAATGAGAATATGTCTACTGGAACTGGTACACTACCTCCCATGCCACC

Basic information

species Zea mays
transcript GRMZM2G353213_T01
intron # 1
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GRMZM2G353213_T02 (Zea mays), 3'ss of exon 1
lower sequence: LOC_Os04g35900.1 (Oryza sativa), 3'ss of exon 1
gctgatgagtaga--gttcagaatggtgtcgcttgttcccatttctattcgtgtagtctattttattctgatataactaagtaaaaacgttcattacatcagTTTTCGAGGGATTGAGAGCAAAAGGCTTTGCAAGCATGTCATCTTCGACTGGCAATGAGAATATGTCTACTGGAACTGGTACACTACCTCCCATGCCACC
 | || || ||||   | |  |   |  | |  | | |||  || || || | |  |         |||   || | |  |         |  | ||| ||| |||||||||||| |   |||| || |||||||||||||| ||||||||   || |||||||||||| |||||||| ||| | |||||||||||||||||
-ccgacgaatagacaatcccaatcagcttaggatttcccccattttaatcttatgctgccggaggatctc-cattattctgattgtttagttgtaacaacagGTTTCGAGGGATTAAAGACAAATGGATTTGCAAGCATGTCGTCTTCGACCAACAGTGAGAATATGTCAACTGGAACGGGTTCCCTACCTCCCATGCCACC
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|149109665|gb|EE293452.2|EE293452
EST:     GCCCAGGCTCTTCGTTGCCGCGGCGGCGGCTCCTCGCGGCTCCGGAAACG                         TTTTCGAGGGATTGAGAGCAAAAGGCTTTGCAAGCATGTCATCTTCGACTG
genomic: GCCCAGGCTCTTCGTTGCCGCGGCGGCGGCTCCTCGCGGCTCCGGAAACGgtgaggggat ... attacatcagTTTTCGAGGGATTGAGAGCAAAAGGCTTTGCAAGCATGTCATCTTCGACTG
EST: gi|211025073|gb|FL063421.1|FL063421
EST:     GCCCAGGCTCTTCGTTGCCGCGGCGGCGGCTCCTCGCGGCTCCGGAAACG                         TTTTCGAGGGATTGAGAGCAAAAGGCTTTGCAAGCATGTCATCTTCGACTG
genomic: GCCCAGGCTCTTCGTTGCCGCGGCGGCGGCTCCTCGCGGCTCCGGAAACGgtgaggggat ... attacatcagTTTTCGAGGGATTGAGAGCAAAAGGCTTTGCAAGCATGTCATCTTCGACTG
EST: gi|211025075|gb|FL063423.1|FL063423
EST:     GCCCAGGCTCTTCGTTGCCGCGGCGGCGGCTCCTCGCGGCTCCGGAAACG                         TTTTCGAGGGATTGAGAGCAAAAGGCTTTGCAAGCATGTCATCTTCGACTG
genomic: GCCCAGGCTCTTCGTTGCCGCGGCGGCGGCTCCTCGCGGCTCCGGAAACGgtgaggggat ... attacatcagTTTTCGAGGGATTGAGAGCAAAAGGCTTTGCAAGCATGTCATCTTCGACTG
EST: gi|71775481|gb|DR973359.1|DR973359
EST:     GCCCAGGCTCTTCGTTGCCGCGGCGGCGGCTCCTCGCGGCTCCGGAAACG                         TTTTCGAGGGATTGAGAGCAAAAGGCTTTGCAAGCATGTCATCTTCGACTG
genomic: GCCCAGGCTCTTCGTTGCCGCGGCGGCGGCTCCTCGCGGCTCCGGAAACGgtgaggggat ... attacatcagTTTTCGAGGGATTGAGAGCAAAAGGCTTTGCAAGCATGTCATCTTCGACTG
EST: gi|91055447|gb|EB165865.1|EB165865
EST:     GCCCAGGCTCTTCGTTGCCGCGGCGGCGGCTCCTCGCGGCTCCGGAAACG                         TTTTCGAGGGATTGAGAGCAAAAGGCTTTGCAAGCATGTCATCTTCGACTG
genomic: GCCCAGGCTCTTCGTTGCCGCGGCGGCGGCTCCTCGCGGCTCCGGAAACGgtgaggggat ... attacatcagTTTTCGAGGGATTGAGAGCAAAAGGCTTTGCAAGCATGTCATCTTCGACTG
EST: gi|211025064|gb|FL063412.1|FL063412
EST:     GCCCAGGCTCTTCGTTGCCGCGGCGGCGGCTCCTCGCGGCTCCGGAAACG                         TTTTCGAGGGATTGAGAGCAAAAGGCTTTGCAAGCATGTCATCTTCGACTG
genomic: GCCCAGGCTCTTCGTTGCCGCGGCGGCGGCTCCTCGCGGCTCCGGAAACGgtgaggggat ... attacatcagTTTTCGAGGGATTGAGAGCAAAAGGCTTTGCAAGCATGTCATCTTCGACTG
EST: gi|148945681|gb|EC890953.2|EC890953
EST:     GCCCAGGCTCTTCGTTGCCGCGGCGGCGGCTCCTCGCGGCTCCGGAAACG                         TTTTCGAGGGATTGAGAGCAAAAGGCTTTGCAAGCATGTCATCTTCGACTG
genomic: GCCCAGGCTCTTCGTTGCCGCGGCGGCGGCTCCTCGCGGCTCCGGAAACGgtgaggggat ... attacatcagTTTTCGAGGGATTGAGAGCAAAAGGCTTTGCAAGCATGTCATCTTCGACTG
EST: gi|71448507|gb|DR829557.1|DR829557
EST:     GCCCAGGCTCTTCGTTGCCGCGGCGGCGGCTCCTCGCGGCTCCGGAAACG                         TTTTCGAGGGATTGAGAGCAAAAGGCTTTGCAAGCATGTCATCTTCGACTG
genomic: GCCCAGGCTCTTCGTTGCCGCGGCGGCGGCTCCTCGCGGCTCCGGAAACGgtgaggggat ... attacatcagTTTTCGAGGGATTGAGAGCAAAAGGCTTTGCAAGCATGTCATCTTCGACTG
EST: gi|211025068|gb|FL063416.1|FL063416
EST:     GCCCAGGCTCTTCGTTGCCGCGGCGGCGGCTCCTCGCGGCTCCGGAAACG                         TTTTCGAGGGATTGAGAGCAAAAGGCTTTGCAAGCATGTCATCTTCGACTG
genomic: GCCCAGGCTCTTCGTTGCCGCGGCGGCGGCTCCTCGCGGCTCCGGAAACGgtgaggggat ... attacatcagTTTTCGAGGGATTGAGAGCAAAAGGCTTTGCAAGCATGTCATCTTCGACTG


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

ttcgtgtagtctattttattctgatataactaagtaaaaacgttcattacatcagTTTTCGAGGGATTGAGAGCAAAAGGCTTTGCAAGCATGTCATCTTCGACTGGCAATGAGAATATGTCTACTGGAACTGGTACACTACCTCCCATGCCACC
                       atataac  putative branch site (score: 3)
           tattttattctgatat  TA-rich tract