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 5'  3'   		2  
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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

...catgtggtgctatgtgaagtttttttatatgttgatttggatcacagaaattcatttaatattttgagatacttatctcttctgttctttacgttgacagGTGAAAATCGGTCTCCGTGTTCTCACAAGGTCTATGCCAGAGGCTACCACATATCTACAGAACTCTGGGTGAGAACTACAATGAGAGAGTTTTGCCTTCA

Basic information

species Zea mays
transcript GRMZM2G352289_T02
intron # 1
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GRMZM2G352289_T01 (Zea mays), 3'ss of exon 1
lower sequence: LOC_Os07g15880.1 (Oryza sativa), 3'ss of exon 2
catgtggtgctatgtgaagtttttt---tatatgttgatttggatcacag--aaattcatttaatattttgagatacttatctcttctgttctttacgttgacagGTGAAAATCGGTCTCCGTGTTCTCACAAGGTCTATGCCAGAG--GCTACCACATATCTACAGAACTCTGGGTGAGAACTACAATGAGAGAGTTTTGCCTTCA
 ||      ||   | |  ||||||    || | |||   |  ||    |  |  | |  || |||||||    ||   || | || |  ||| |   | | ||||||||||| ||||||||||| || |||||| | |||||||||  |||||||  ||||||||| |||||||| ||||||| ||||||||||||||||||||  
-ataaaacccttcttcatattttttatgcatctattgtactctatttttggcaggtaccctttatattttt---tatgcatgtattgtactctattt-tgggcagGTGAAAATTGGTCTCCGTGTCCTTACAAGGCCCATGCCAGAGAAGCTACCAACTATCTACAGGACTCTGGGGGAGAACTTCAATGAGAGAGTTTTGCCTT--


















 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

agaaattcatttaatattttgagatacttatctcttctgttctttacgttgacagGTGAAAATCGGTCTCCGTGTTCTCACAAGGTCTATGCCAGAGGCTACCACATATCTACAGAACTCTGGGTGAGAACTACAATGAGAGAGTTTTGCCTTCA
        atttaat  putative branch site (score: 4)
                          cttatctcttctgttc  putative PPT
        atttaatattttgaga  TA-rich tract