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gtatccatccagctcctcctcctcctcgccgccggcgccgcctcgatcccgtcctggactggagtctcaccctacccctctaacaaagtaacaacctcacgattttgcgatttcgtgcagCGGGCACACTGCGGTTATCATTGGCAAGTCCAAGGTGGTCGTCTTCGGAGGATTCGCCGACAAGCGCTTCCTCGCTGATGTTTCCGTCTACGACGTCG
species | Zea mays |
transcript | GRMZM2G351160_T01 |
intron # | 1 |
splice site | 3' |
intron type | U2 |
EST: GTGAGGGCCGACTCCTCCGACTTCGGGGGCGACCGTCCCGCCCCCCGCAG CGGGCACACTGCGGTTATCATTGGCAAGTCCAAGGTGGTCGTCTTCGGAGGEST: gi|78106677|gb|DV525095.1|DV525095
genomic: GTGAGGGCCGACTCCTCCGACTTCGGGGGCGACCGTCCCGCCCCCCGCAGgtatccatcc ... tttcgtgcagCGGGCACACTGCGGTTATCATTGGCAAGTCCAAGGTGGTCGTCTTCGGAGG
EST: GTGAGGGCCGACTCCTCCGACTTCGGGGGCGACCGTCCCGCCCCCCGCAG CGGGCACACTGCGGTTATCATTGGCAAGTCCAAGGTGGTCGTCTTCGGAGGEST: gi|60348204|gb|DN215177.1|DN215177
genomic: GTGAGGGCCGACTCCTCCGACTTCGGGGGCGACCGTCCCGCCCCCCGCAGgtatccatcc ... tttcgtgcagCGGGCACACTGCGGTTATCATTGGCAAGTCCAAGGTGGTCGTCTTCGGAGG
EST: GTGAGGGCCGACTCCTCCGACTTCGGGGGCGACCGTCCCGCCCCCCGCAG CGGGCACACTGCGGTTATCATTGGCAAGTCCAAGGTGGTCGTCTTCGGAGGEST: gi|76020393|gb|DT947563.1|DT947563
genomic: GTGAGGGCCGACTCCTCCGACTTCGGGGGCGACCGTCCCGCCCCCCGCAGgtatccatcc ... tttcgtgcagCGGGCACACTGCGGTTATCATTGGCAAGTCCAAGGTGGTCGTCTTCGGAGG
EST: GTGAGGGCCGACTCCTCCGACTTCGGGGGCGACCGTCCCGCCCCCCGCAG CGGGCACACTGCGGTTATCATTGGCAAGTCCAAGGTGGTCGTCTTCGGAGGEST: gi|78114121|gb|DV532510.1|DV532510
genomic: GTGAGGGCCGACTCCTCCGACTTCGGGGGCGACCGTCCCGCCCCCCGCAGgtatccatcc ... tttcgtgcagCGGGCACACTGCGGTTATCATTGGCAAGTCCAAGGTGGTCGTCTTCGGAGG
EST: GTGAGGGCCGACTCCTCCGACTTCGGGGGCGACCGTCCCGCCCCCCGCAG CGGGCACACTGCGGTTATCATTGGCAAGTCCAAGGTGGTCGTCTTCGGAGGEST: gi|148938635|gb|EC882966.2|EC882966
genomic: GTGAGGGCCGACTCCTCCGACTTCGGGGGCGACCGTCCCGCCCCCCGCAGgtatccatcc ... tttcgtgcagCGGGCACACTGCGGTTATCATTGGCAAGTCCAAGGTGGTCGTCTTCGGAGG
EST: GTGAGGGCCGACTCCTCCGACTTCGGGGGCGACCGTCCCGCCCCCCGCAG CGGGCACACTGCGGTTATCATTGGCAAGTCCAAGGTGGTCGTCTTCGGAGGEST: gi|89756288|gb|DY686365.1|DY686365
genomic: GTGAGGGCCGACTCCTCCGACTTCGGGGGCGACCGTCCCGCCCCCCGCAGgtatccatcc ... tttcgtgcagCGGGCACACTGCGGTTATCATTGGCAAGTCCAAGGTGGTCGTCTTCGGAGG
EST: GTGAGGGCCGACTCCTCCGACTTCGGGGGCGACCGTCCCGCCCCCCGCAG CGGGCACACTGCGGTTATCATTGGCAAGTCCAAGGTGGTCGTCTTCGGAGGEST: gi|148938619|gb|EC882949.2|EC882949
genomic: GTGAGGGCCGACTCCTCCGACTTCGGGGGCGACCGTCCCGCCCCCCGCAGgtatccatcc ... tttcgtgcagCGGGCACACTGCGGTTATCATTGGCAAGTCCAAGGTGGTCGTCTTCGGAGG
EST: GTGAGGGCCGACTCCTCCGACTTCGGGGGCGACCGTCCCGCCCCCCGCAG CGGGCACACTGCGGTTATCATTGGCAAGTCCAAGGTGGTCGTCTTCGGAGG
genomic: GTGAGGGCCGACTCCTCCGACTTCGGGGGCGACCGTCCCGCCCCCCGCAGgtatccatcc ... tttcgtgcagCGGGCACACTGCGGTTATCATTGGCAAGTCCAAGGTGGTCGTCTTCGGAGG
ctcaccctacccctctaacaaagtaacaacctcacgattttgcgatttcgtgcagCGGGCACACTGCGGTTATCATTGGCAAGTCCAAGGTGGTCGTCTTCGGAGGATTCGCCGACAAGCGCTTCCTCGCTGATGTTTCCGTCTACGACGTCG
taacaaa TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtatccatccagctcctcctcctcctcgccgccggcgccgcctcgatcccgtcctggactggagtctcaccctacccctctaacaaagtaacaacctcacgattttgcgatttcgtgcagCGGGCACACTGCGGTTATCATTGGCAAGTCCAAGGTGGTCGTCTTCGGAGGATTCGCCGACAAGCGCTTCCTCGCTGATGTTTCCGTCTACGACGTCG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCTGAT