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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtacgcgacggcgagccccgagccacgttccgattcgtagcttccttgtagcgccgctcctgatctgggtgggctggctgtggtgcggtgggaggtgcggtgcagGATCCGGAGGAGGCGGATATGCCGGTGCCGAGAGAGCGGCTGTTGGAGGCGGCGTGGCCGGAGATGCCTTACGGCGAGTCCGGCGAGGCTGCGCCGTCCT

Basic information

species Zea mays
transcript GRMZM2G348578_T01
intron # 1
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GRMZM2G348578_T01 (Zea mays), 3'ss of exon 1
lower sequence: LOC_Os03g55380.1 (Oryza sativa), 3'ss of exon 1
-----------gtacgcgacggcgagccccgagccacgttccgattcgtagcttccttgtagcgccgctcctgatctgggtg--ggctggctgtggtgcgg-tgggaggtg--cggtgcagGATCCG---------GAGGAGGCGGATATGCCGGTGCCGAGAGAGCGGCTGTTGGAGGCGGCGTGGCCGGAGATGCCTTACGGCGAGTCCGGCGAGGCTGCGCCGTCCT
           ||| ||||||||||| |||   || |    | |  |     |   |||| | |    | ||||||||||||  || |   ||  | |||| || |  ||   ||  ||||||||||         ||||||   || | |||| ||  ||| ||||||||| |||||||||||||||| |  ||| | || ||||||||||||||| | |         
gtaagcgaggcgta-gcgacggcgagacccccaccccaccgccaccctcgtttcgtttgtcggg----ttctgatctgggtggtggttttttggcgcgcggctgtgttgttcccgaggcagGATCCGCAGGGGGAGGAGGAGCTCGACACGCCGATGAGGAGGGAGCGGCTGATGGAGGCGGCGTGGCCCGGAATGGCGTATGGCGAGTCCGGCGAGCCGG---------
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|211221696|gb|FL402199.1|FL402199
EST:     GCTCCCTCTTCTTCCTCGCCGGCTTCTTCGGCTCGCTCCTCTTCACCCAG                         GATCCGGAGGAGGCGGATATGCCGGTACCGAGAGAGCGGCTGTTGGAGGCG
genomic: GCTCCCTCTTCTTCCTCGCCGGCTTCTTCGGCTCGCTCCTCTTCACCCAGgtacgcgacg ... tgcggtgcagGATCCGGAGGAGGCGGATATGCCGGTGCCGAGAGAGCGGCTGTTGGAGGCG
EST: gi|211524527|gb|FL409924.1|FL409924
EST:     GCTCCCTCTTCTTCCTCGCCGGCTTCTTCGGCTCGCTCCTCTTCACCCAG                         GATCCGGAGGAGGCGGATATGCCGGTACCGAGAGAGCGGCTGTTGGAGGCG
genomic: GCTCCCTCTTCTTCCTCGCCGGCTTCTTCGGCTCGCTCCTCTTCACCCAGgtacgcgacg ... tgcggtgcagGATCCGGAGGAGGCGGATATGCCGGTGCCGAGAGAGCGGCTGTTGGAGGCG
EST: gi|211379444|gb|FL390601.1|FL390601
EST:     GCTCCCTCTTCTTCCTCGCCGGCTTCTTCGGCTCGCTCCTCTTCACCCAG                         GATCCGGAGGAGGCGGATATGCCGGTACCGAGAGAGCGGCTGTTGGAGGCG
genomic: GCTCCCTCTTCTTCCTCGCCGGCTTCTTCGGCTCGCTCCTCTTCACCCAGgtacgcgacg ... tgcggtgcagGATCCGGAGGAGGCGGATATGCCGGTGCCGAGAGAGCGGCTGTTGGAGGCG
EST: gi|211059645|gb|FL374517.1|FL374517
EST:     GCTCCCTCTTCTTCCTCGCCGGCTTCTTCGGCTCGCTCCTCTTCACCCAG                         GATCCGGAGGAGGCGGATATGCCGGTGCCGAGAGAGCGGCTGTTGGAGGCG
genomic: GCTCCCTCTTCTTCCTCGCCGGCTTCTTCGGCTCGCTCCTCTTCACCCAGgtacgcgacg ... tgcggtgcagGATCCGGAGGAGGCGGATATGCCGGTGCCGAGAGAGCGGCTGTTGGAGGCG
EST: gi|21760278|gb|BQ635819.1|BQ635819
EST:     GCTCCCTCTTCTTCCTCGCCGGCTTCTTCGGCTCGCTCCTCTTCACCCAG                         GATCCGGAGGAGGCGGATATGCCGGTACCGAGAGAGCGGCTGTTGGAGGCG
genomic: GCTCCCTCTTCTTCCTCGCCGGCTTCTTCGGCTCGCTCCTCTTCACCCAGgtacgcgacg ... tgcggtgcagGATCCGGAGGAGGCGGATATGCCGGTGCCGAGAGAGCGGCTGTTGGAGGCG
EST: gi|211275143|gb|FL390046.1|FL390046
EST:     GCTCCCTCTTCTTCCTCGCCGGCTTCTTCGGCTCGCTCCTCTTCACCCAG                         GATCCGGAGGAGGCGGATATGCCGGTACCGAGAGAGCGGCTGTTGGAGGCG
genomic: GCTCCCTCTTCTTCCTCGCCGGCTTCTTCGGCTCGCTCCTCTTCACCCAGgtacgcgacg ... tgcggtgcagGATCCGGAGGAGGCGGATATGCCGGTGCCGAGAGAGCGGCTGTTGGAGGCG
EST: gi|211156335|gb|FL380330.1|FL380330
EST:     GCTCCCTCTTCTTCCTCGCCGGCTTCTTCGGCTCGCTCCTCTTCACCCAG                         GATCCGGAGGAGGCGGATATGCCGGTACCGAGAGAGCGGCTGTTGGAGGCG
genomic: GCTCCCTCTTCTTCCTCGCCGGCTTCTTCGGCTCGCTCCTCTTCACCCAGgtacgcgacg ... tgcggtgcagGATCCGGAGGAGGCGGATATGCCGGTGCCGAGAGAGCGGCTGTTGGAGGCG
EST: gi|211051020|gb|FL385058.1|FL385058
EST:     GCTCCCTCTTCTTCCTCGCCGGCTTCTTCGGCTCGCTCCTCTTCACCCAG                         GATCCGGAGGASGCGGATATGCCGGTACCGAGAGAGCGGCTGTTGGASGCG
genomic: GCTCCCTCTTCTTCCTCGCCGGCTTCTTCGGCTCGCTCCTCTTCACCCAGgtacgcgacg ... tgcggtgcagGATCCGGAGGAGGCGGATATGCCGGTGCCGAGAGAGCGGCTGTTGGAGGCG
EST: gi|211382331|gb|FL400544.1|FL400544
EST:     GCTCCCTCTTCTTCCTCGCCGGCTTCTTCGGCTCGCTCCTCTTCACCCAG                         GATCCGGAGGAGGCGGATATGCCGGTGCCGAGAGAGCGGCTGTTGGAGGCG
genomic: GCTCCCTCTTCTTCCTCGCCGGCTTCTTCGGCTCGCTCCTCTTCACCCAGgtacgcgacg ... tgcggtgcagGATCCGGAGGAGGCGGATATGCCGGTGCCGAGAGAGCGGCTGTTGGAGGCG
EST: gi|211146315|gb|FL420911.1|FL420911
EST:     GCTCCCTCTTCTTCCTCGCCGGCTTCTTCGGCTCGCTCCTCTTCACCCAG                         GATCCGGARGAGGCGGATATGCCGGTACCGAGAGAGCGGCTGTTGGAGGCG
genomic: GCTCCCTCTTCTTCCTCGCCGGCTTCTTCGGCTCGCTCCTCTTCACCCAGgtacgcgacg ... tgcggtgcagGATCCGGAGGAGGCGGATATGCCGGTGCCGAGAGAGCGGCTGTTGGAGGCG
EST: gi|211194093|gb|FL377676.1|FL377676
EST:     GCTCCCTCTTCTWCCTCGCCGGCWTCTTCGGCTCGCTCCTCTTCACCCAG                         GATCCGGAGGAGGCGGATATGCCGGTGCCGAGAGAGCGGCTGTTGGAGGCG
genomic: GCTCCCTCTTCTTCCTCGCCGGCTTCTTCGGCTCGCTCCTCTTCACCCAGgtacgcgacg ... tgcggtgcagGATCCGGAGGAGGCGGATATGCCGGTGCCGAGAGAGCGGCTGTTGGAGGCG
EST: gi|211159864|gb|FL403893.1|FL403893
EST:     GCTCCCTCTTCTTCCTCGCCGGCTTCTTCGGCTCGCTCCTCTTCACCCAG                         GATCCGGAGGAGGCGGATATGCCGGTACCGAGAGAGCGGCTGTTGGAGGCG
genomic: GCTCCCTCTTCTTCCTCGCCGGCTTCTTCGGCTCGCTCCTCTTCACCCAGgtacgcgacg ... tgcggtgcagGATCCGGAGGAGGCGGATATGCCGGTGCCGAGAGAGCGGCTGTTGGAGGCG
EST: gi|211195068|gb|FL425772.1|FL425772
EST:     GCTCCCTCTTCTTCCTCGCCGGCTTCTTCGGCTCGCTCCTCTTCACCCAG                         GATCCGGAGGAGGCGGATATGCCGGTGCCGAGAGAGCGGCTGTTGGAGGCG
genomic: GCTCCCTCTTCTTCCTCGCCGGCTTCTTCGGCTCGCTCCTCTTCACCCAGgtacgcgacg ... tgcggtgcagGATCCGGAGGAGGCGGATATGCCGGTGCCGAGAGAGCGGCTGTTGGAGGCG
EST: gi|211382081|gb|FL390616.1|FL390616
EST:     GCTCCCTCTTCTTCCTCGCCGGCTTCTTCGGCTCGCTCCTCTTCACCCAG                         GATCCGGAGGAGGCGGATATGCCGGTACCGAGAGAGCGGCTGTTGGAGGCG
genomic: GCTCCCTCTTCTTCCTCGCCGGCTTCTTCGGCTCGCTCCTCTTCACCCAGgtacgcgacg ... tgcggtgcagGATCCGGAGGAGGCGGATATGCCGGTGCCGAGAGAGCGGCTGTTGGAGGCG
EST: gi|211446193|gb|FL415918.1|FL415918
EST:     GCTCCCTCTTCTTCCTCGCCGGCTTCTTCGGCTCGCTCCTCTTCACCCAG                         GATCCGGAGGAGGCGGATATGCCGGTACCGAGAGAGCGGCTGTTGGAGGCG
genomic: GCTCCCTCTTCTTCCTCGCCGGCTTCTTCGGCTCGCTCCTCTTCACCCAGgtacgcgacg ... tgcggtgcagGATCCGGAGGAGGCGGATATGCCGGTGCCGAGAGAGCGGCTGTTGGAGGCG
EST: gi|211382025|gb|FL388792.1|FL388792
EST:     GCTCCCTCTTCTTCCTCGCCGGCTTCTTCGGCTCGCTCCTCTTCACCCAG                         GATCCGGAGGAGGCGGATATGCCGGTACCGAGAGAGCGGCTGTTGGAGGCG
genomic: GCTCCCTCTTCTTCCTCGCCGGCTTCTTCGGCTCGCTCCTCTTCACCCAGgtacgcgacg ... tgcggtgcagGATCCGGAGGAGGCGGATATGCCGGTGCCGAGAGAGCGGCTGTTGGAGGCG
EST: gi|211158500|gb|FL418680.1|FL418680
EST:     GCTCCCTCTTCTTCCTCGCCGGCTTCTTCGGCTCGCTCCTCTTCACCCAG                         GATCCGGAGGANGCGGATATGCCGGTGCCGAGAGAGCGGCTGTTGGAGGCG
genomic: GCTCCCTCTTCTTCCTCGCCGGCTTCTTCGGCTCGCTCCTCTTCACCCAGgtacgcgacg ... tgcggtgcagGATCCGGAGGAGGCGGATATGCCGGTGCCGAGAGAGCGGCTGTTGGAGGCG
EST: gi|211168210|gb|FL421348.1|FL421348
EST:     GCTCCCTCTTCTTCCTCGCCGGCTTCTTCGGCTCGCTCCTCTTCACCCAG                         GATCCGGAGGAGGCGGATATGCCGGTGCCGAGAGAGCGGCTGTTGGAGGCG
genomic: GCTCCCTCTTCTTCCTCGCCGGCTTCTTCGGCTCGCTCCTCTTCACCCAGgtacgcgacg ... tgcggtgcagGATCCGGAGGAGGCGGATATGCCGGTGCCGAGAGAGCGGCTGTTGGAGGCG
EST: gi|211054755|gb|FL416973.1|FL416973
EST:     GCTCCCTCTTCTTCCTCGCCGGCTTCTTCGGCTCGCTCCTCTTCACCCAG                         GATCCGGAGGAGGCGGATATGCCGGTACCGAGAGAGCGGCTGTTGGAGGCG
genomic: GCTCCCTCTTCTTCCTCGCCGGCTTCTTCGGCTCGCTCCTCTTCACCCAGgtacgcgacg ... tgcggtgcagGATCCGGAGGAGGCGGATATGCCGGTGCCGAGAGAGCGGCTGTTGGAGGCG
EST: gi|148950085|gb|EC895620.2|EC895620
EST:     GCTCCCTCTTCTTCCTCGCCGGCTTCTTCGGCTCGCTCCTCTTCACCCAG                         GATCCGGAGGAGGCGGATATGCCGGTGCCGAGAGAGCGGCTGTTGGAGGCG
genomic: GCTCCCTCTTCTTCCTCGCCGGCTTCTTCGGCTCGCTCCTCTTCACCCAGgtacgcgacg ... tgcggtgcagGATCCGGAGGAGGCGGATATGCCGGTGCCGAGAGAGCGGCTGTTGGAGGCG
EST: gi|211006246|gb|FL408516.1|FL408516
EST:     GCTCCCTCTTCTTCCTCGCCGGCTTCTTCGGCTCGCTCCTCTTCACCCAG                         GATCCGGAGGAGGCGGATATGCCGGTGCCGAGAGAGCGGCTGTTGGAGGCG
genomic: GCTCCCTCTTCTTCCTCGCCGGCTTCTTCGGCTCGCTCCTCTTCACCCAGgtacgcgacg ... tgcggtgcagGATCCGGAGGAGGCGGATATGCCGGTGCCGAGAGAGCGGCTGTTGGAGGCG
EST: gi|211384668|gb|FL388813.1|FL388813
EST:     GCTCCCTCTTCTTCCTCGCCGGCTTCTTCGGCTCGCTCCTCTTCACCCAG                         GATCCGGAGGAGGCGGATATGCCGGTACCGAGAGAGCGGCTGTTGGAGGCG
genomic: GCTCCCTCTTCTTCCTCGCCGGCTTCTTCGGCTCGCTCCTCTTCACCCAGgtacgcgacg ... tgcggtgcagGATCCGGAGGAGGCGGATATGCCGGTGCCGAGAGAGCGGCTGTTGGAGGCG
EST: gi|211076469|gb|FL387319.1|FL387319
EST:     GCTCCCTCTTCTTCCTCGCCGGCTTCTTCGGCTCGCTCCTCTTCACCCAG                         GATCCGGAGGAGGCGGATATGCCGGTACCGAGAGAGCGGCTGTTGGAGGCG
genomic: GCTCCCTCTTCTTCCTCGCCGGCTTCTTCGGCTCGCTCCTCTTCACCCAGgtacgcgacg ... tgcggtgcagGATCCGGAGGAGGCGGATATGCCGGTGCCGAGAGAGCGGCTGTTGGAGGCG
EST: gi|211226255|gb|FL422660.1|FL422660
EST:     GCTCCCTCTTCTTCCTCGCCGGCTTCTTCGGCTCGCTCCTCTTCACCCAG                         GATCCGGAGGAGGCGGATATGCCGGTACCGAGAGAGCGGCTGTTGGAGGCG
genomic: GCTCCCTCTTCTTCCTCGCCGGCTTCTTCGGCTCGCTCCTCTTCACCCAGgtacgcgacg ... tgcggtgcagGATCCGGAGGAGGCGGATATGCCGGTGCCGAGAGAGCGGCTGTTGGAGGCG
EST: gi|78080612|gb|DV509024.1|DV509024
EST:     GCTCCCTCTTCTTCCTCGCCGGCTTCTTCGGCTCGCTCCTCTTCACCCAG                         GATCCGGAGGAGGCGGATATGCCGGTGCCGAGAGAGCGGCTGTTGGAGGCG
genomic: GCTCCCTCTTCTTCCTCGCCGGCTTCTTCGGCTCGCTCCTCTTCACCCAGgtacgcgacg ... tgcggtgcagGATCCGGAGGAGGCGGATATGCCGGTGCCGAGAGAGCGGCTGTTGGAGGCG
EST: gi|211109489|gb|FL429133.1|FL429133
EST:     GCTCCCTCTTCTTCCTCGCCGGCTTCTTCGGCTCGCTCCTCTTCACCCAG                         GATCCGGAG-AGGCGGATATGCCGGNTGCCGAGAGAGCGGCTGTTGGA
genomic: GCTCCCTCTTCTTCCTCGCCGGCTTCTTCGGCTCGCTCCTCTTCACCCAGgtacgcgacg ... tgcggtgcagGATCCGGAGGAGGCGGATATGCCGG-TGCCGAGAGAGCGGCTGTTGGA
EST: gi|211498795|gb|FL369832.1|FL369832
EST:     GCTCCCTCTTCTTCCTCGCCGGCTTCTTCGGCTCGCTCCTCTTCACCCAG                         GATCCGGAGGAGGCGGATATGCCGGTACCGAGAGAGCGGCTGTTGGAGGCG
genomic: GCTCCCTCTTCTTCCTCGCCGGCTTCTTCGGCTCGCTCCTCTTCACCCAGgtacgcgacg ... tgcggtgcagGATCCGGAGGAGGCGGATATGCCGGTGCCGAGAGAGCGGCTGTTGGAGGCG
EST: gi|211059739|gb|FL378978.1|FL378978
EST:     GCTCCCTCTTCTTCCTCGCCGGCTTCTTCGGCTCGCTCCTCTTCACCCAG                         GATCCGGAGGAGGCGGATATGCCGGTGCCGAGAGAGCGGCTGTTGGAGGCG
genomic: GCTCCCTCTTCTTCCTCGCCGGCTTCTTCGGCTCGCTCCTCTTCACCCAGgtacgcgacg ... tgcggtgcagGATCCGGAGGAGGCGGATATGCCGGTGCCGAGAGAGCGGCTGTTGGAGGCG
EST: gi|211327568|gb|FL371067.1|FL371067
EST:     GCTCCCTCTTCTTCCTCGCCGGCTTCTTCGGCTCGCTCCTCTTCACCCAG                         GATCCGGAGGAGGCGGATATGCCGGTACCGAGAGAGCGGCTGTTGGAGGCG
genomic: GCTCCCTCTTCTTCCTCGCCGGCTTCTTCGGCTCGCTCCTCTTCACCCAGgtacgcgacg ... tgcggtgcagGATCCGGAGGAGGCGGATATGCCGGTGCCGAGAGAGCGGCTGTTGGAGGCG
EST: gi|211076164|gb|FL369889.1|FL369889
EST:     GCTCCCTCTTCTTCCTCGCCGGCTTCTTCGGCTCGCTCCTCTTCACCCAG                         GATCCGGAGGAGGCGGATATGCCGGTACCGAGAGAGCGGCTGTTGGAGGCG
genomic: GCTCCCTCTTCTTCCTCGCCGGCTTCTTCGGCTCGCTCCTCTTCACCCAGgtacgcgacg ... tgcggtgcagGATCCGGAGGAGGCGGATATGCCGGTGCCGAGAGAGCGGCTGTTGGAGGCG
EST: gi|211207594|gb|FL416149.1|FL416149
EST:     GCTCCCTCTTCTTCCTCGCCGGCTTCTTCGGCTCGCTCCTCTTCACCCAG                         GATCCGGA-GAGGCGGATATGCCGGTACCGAGAGAGCGGCTGTTGGAGGCG
genomic: GCTCCCTCTTCTTCCTCGCCGGCTTCTTCGGCTCGCTCCTCTTCACCCAGgtacgcgacg ... tgcggtgcagGATCCGGAGGAGGCGGATATGCCGGTGCCGAGAGAGCGGCTGTTGGAGGCG
EST: gi|211204904|gb|FL412274.1|FL412274
EST:     GCTCCCTCTTCTTCCTCGCCGGCTTCTTCGGCTCGCTCCTCTTCACCCAG                         GATCCGGAGGAGGCGGATATGCCGGTGCCGAGAGAGCGGCTGTTGGAGGCG
genomic: GCTCCCTCTTCTTCCTCGCCGGCTTCTTCGGCTCGCTCCTCTTCACCCAGgtacgcgacg ... tgcggtgcagGATCCGGAGGAGGCGGATATGCCGGTGCCGAGAGAGCGGCTGTTGGAGGCG
EST: gi|211206598|gb|FL376326.1|FL376326
EST:     GCTCCCTCTTCTTCCTCGCCGGCTTCTTCGGCTCGCTCCTCTTCACCCAG                         GATCCGGAGGAGGCGGATATGCCGGTGCCGAGAGAGCGGCTGTTGGAGGCG
genomic: GCTCCCTCTTCTTCCTCGCCGGCTTCTTCGGCTCGCTCCTCTTCACCCAGgtacgcgacg ... tgcggtgcagGATCCGGAGGAGGCGGATATGCCGGTGCCGAGAGAGCGGCTGTTGGAGGCG
EST: gi|211112785|gb|FL373233.1|FL373233
EST:     GCTCCCTCTTCTTCCTCGCCGGCTTCTTCGGCTCGCTCCTCTTCACCCAG                         GATCCGGAGGAGGCGGATATGCCGGTGCCGAGAGAGCGGCTGTTGGAGGCG
genomic: GCTCCCTCTTCTTCCTCGCCGGCTTCTTCGGCTCGCTCCTCTTCACCCAGgtacgcgacg ... tgcggtgcagGATCCGGAGGAGGCGGATATGCCGGTGCCGAGAGAGCGGCTGTTGGAGGCG
EST: gi|211313563|gb|FL415358.1|FL415358
EST:     GCTCCCTCTTCTTCCTCGCCGGCTTCTTCGGCTCGCTCCTCTTCACCCAG                         GATCCGGAGGAGGCGGATATGCCGGTGCCGAGAGAGCGGCTGTTGGAGGCG
genomic: GCTCCCTCTTCTTCCTCGCCGGCTTCTTCGGCTCGCTCCTCTTCACCCAGgtacgcgacg ... tgcggtgcagGATCCGGAGGAGGCGGATATGCCGGTGCCGAGAGAGCGGCTGTTGGAGGCG
EST: gi|211149284|gb|FL424935.1|FL424935
EST:     GCTCCCTCTTCTTCCTCGCCGGCTTCTTCGGCTCGCTCCTCTTCACCCAG                         GATCCGGAGGAGGCGGATATGCCGGTGCCGAGAGAGCGGCTGTTGGAGGCG
genomic: GCTCCCTCTTCTTCCTCGCCGGCTTCTTCGGCTCGCTCCTCTTCACCCAGgtacgcgacg ... tgcggtgcagGATCCGGAGGAGGCGGATATGCCGGTGCCGAGAGAGCGGCTGTTGGAGGCG
EST: gi|211087927|gb|FL409079.1|FL409079
EST:     GCTCCCTCTTCTTCCTCGCCGGCTTCTTCGGCTCGCTCCTCTTCACCCAG                         GATCCGGAGGAGGCGGATATGCCGGTGCCGAGAGAGCGGCTGTTGGAGGCG
genomic: GCTCCCTCTTCTTCCTCGCCGGCTTCTTCGGCTCGCTCCTCTTCACCCAGgtacgcgacg ... tgcggtgcagGATCCGGAGGAGGCGGATATGCCGGTGCCGAGAGAGCGGCTGTTGGAGGCG
EST: gi|26457639|gb|CA829222.1|CA829222
EST:     GCTCCCTCTTCTTCCTCGCCGGCTTCTTCGGCTCGCTCCTCTTCACCCAG                         GATCCGGAGGAGGCGGATATGCCGGTACCGAGAGAGCGGCTGCTGGAGGCG
genomic: GCTCCCTCTTCTTCCTCGCCGGCTTCTTCGGCTCGCTCCTCTTCACCCAGgtacgcgacg ... tgcggtgcagGATCCGGAGGAGGCGGATATGCCGGTGCCGAGAGAGCGGCTGTTGGAGGCG
EST: gi|148941852|gb|EC886830.2|EC886830
EST:     GCTCCCTCTTCTTCCTCGCCGGCTTCTTCGGCTCGCTCCTCTTCACCCAG                         GATCCGGAGGAGGCGGATATGCCGGTGCCGAGAGAGCGGCTGTTGGAGGCG
genomic: GCTCCCTCTTCTTCCTCGCCGGCTTCTTCGGCTCGCTCCTCTTCACCCAGgtacgcgacg ... tgcggtgcagGATCCGGAGGAGGCGGATATGCCGGTGCCGAGAGAGCGGCTGTTGGAGGCG
EST: gi|211153339|gb|FL393645.1|FL393645
EST:     GCTCCCTCTTCTTCCTCGCCGGCTTCTTCGGCTCGCTCCTCTTCACCCAG                         GATCCGGAGGAGGCGGATATGCCGGTACCGAGAGAGCGGCTGTTGGAGGCG
genomic: GCTCCCTCTTCTTCCTCGCCGGCTTCTTCGGCTCGCTCCTCTTCACCCAGgtacgcgacg ... tgcggtgcagGATCCGGAGGAGGCGGATATGCCGGTGCCGAGAGAGCGGCTGTTGGAGGCG
EST: gi|149009320|gb|EE041386.2|EE041386
EST:     GCTCCCTCTTCTTCCTCGCCGGCTTCTTCGGCTCGCTCCTCTTCACCCAG                         GATCCGGAGGAGGCGGATATGCCGGTGCCGAGAGAGCGGCTGTTGGAGGCG
genomic: GCTCCCTCTTCTTCCTCGCCGGCTTCTTCGGCTCGCTCCTCTTCACCCAGgtacgcgacg ... tgcggtgcagGATCCGGAGGAGGCGGATATGCCGGTGCCGAGAGAGCGGCTGTTGGAGGCG
EST: gi|89247524|gb|DY619310.1|DY619310
EST:     GCTCCCTCTTCTTCCTCGCCGGCTTCTTCGGCTCGCTCCTCTTCACCCAG                         GATCCGGAGGAGGCGGATATGCCGGTGCCGAGAGAGCGGCTGTTGGAGGCG
genomic: GCTCCCTCTTCTTCCTCGCCGGCTTCTTCGGCTCGCTCCTCTTCACCCAGgtacgcgacg ... tgcggtgcagGATCCGGAGGAGGCGGATATGCCGGTGCCGAGAGAGCGGCTGTTGGAGGCG
EST: gi|211228049|gb|FL407858.1|FL407858
EST:     GCTCCCTCTTCTTCCTCGCCGGCTTCTTCGGCTCGCTCCTCTTCACCCAG                         GATCCGGAGGAGGCGGATATGCCGGTGCCGAGAGAGCGGCTGTTGGAGGCG
genomic: GCTCCCTCTTCTTCCTCGCCGGCTTCTTCGGCTCGCTCCTCTTCACCCAGgtacgcgacg ... tgcggtgcagGATCCGGAGGAGGCGGATATGCCGGTGCCGAGAGAGCGGCTGTTGGAGGCG
EST: gi|211533533|gb|FL409962.1|FL409962
EST:     GCTCCCTCTTCTTCCTCGCCGGCTTCTTCGGCTCGCTCCTCTTCACCCAG                         GATCCGGAGGAGGCGGATATGCCGGTGCCGAGAGAGCGGCTGTTGGAGGCG
genomic: GCTCCCTCTTCTTCCTCGCCGGCTTCTTCGGCTCGCTCCTCTTCACCCAGgtacgcgacg ... tgcggtgcagGATCCGGAGGAGGCGGATATGCCGGTGCCGAGAGAGCGGCTGTTGGAGGCG
EST: gi|211434206|gb|FL402851.1|FL402851
EST:     GCTCCCTCTTCTTCCTCGCCGGCTTCTTCGGCTCGCTCCTCTTCACCCAG                         GATCCGGAGGAGGCGGATATGCCGGTGCCGAGAGAGCGGCTGTTGGAGGCG
genomic: GCTCCCTCTTCTTCCTCGCCGGCTTCTTCGGCTCGCTCCTCTTCACCCAGgtacgcgacg ... tgcggtgcagGATCCGGAGGAGGCGGATATGCCGGTGCCGAGAGAGCGGCTGTTGGAGGCG
EST: gi|211439349|gb|FL401113.1|FL401113
EST:     GCTCCCTCTTCTTCCTCGCCGGCTTCTTCGGCTCGCTCCTCTTCACCCAG                         GATCCGGAGGAGGCGGATATGCCGGTACCGAGAGAGCGGCTGTTGGAGGCG
genomic: GCTCCCTCTTCTTCCTCGCCGGCTTCTTCGGCTCGCTCCTCTTCACCCAGgtacgcgacg ... tgcggtgcagGATCCGGAGGAGGCGGATATGCCGGTGCCGAGAGAGCGGCTGTTGGAGGCG
EST: gi|211384674|gb|FL389258.1|FL389258
EST:     GCTCCCTCTTCTTCCTCGCCGGCTTCTTCGGCTCGCTCCTCTTCACCCAG                         GATCCGGAGGAGGCGGATATGCCGGTGCCGAGAGAGCGGCTGTTGGAGGCG
genomic: GCTCCCTCTTCTTCCTCGCCGGCTTCTTCGGCTCGCTCCTCTTCACCCAGgtacgcgacg ... tgcggtgcagGATCCGGAGGAGGCGGATATGCCGGTGCCGAGAGAGCGGCTGTTGGAGGCG

RNA-Seq data


 ATGC   Supported by RNA-Seq exonic block that spans over the splice site

 atgs   Truncated intron sequence

Each block is as long as the maximal overhang of any read spanning the junction.
The score is the number of alignments spanning the junction.


Found data for 4 RNA-Seq libraries.


Block sizes: 43 (upstream exon), 46 (downstream exon)
Score: 8

TGCGGGTCTGTTGCGAACGCGACTGCGGCTTCCCGTGGTGCTCCTCTCCTGCTCCCTCTTCTTCCTCGCCGGCTTCTTCGGCTCGCTCCTCTTCACCCAGgtacgcgacg ... tgcggtgcagGATCCGGAGGAGGCGGATATGCCGGTGCCGAGAGAGCGGCTGTTGGAGGCGGCGTGGCCGGAGATGCCTTACGGCGAGTCCGGCGAGGCTGCGCCGTCCT


Block sizes: 42 (upstream exon), 48 (downstream exon)
Score: 15

TGCGGGTCTGTTGCGAACGCGACTGCGGCTTCCCGTGGTGCTCCTCTCCTGCTCCCTCTTCTTCCTCGCCGGCTTCTTCGGCTCGCTCCTCTTCACCCAGgtacgcgacg ... tgcggtgcagGATCCGGAGGAGGCGGATATGCCGGTGCCGAGAGAGCGGCTGTTGGAGGCGGCGTGGCCGGAGATGCCTTACGGCGAGTCCGGCGAGGCTGCGCCGTCCT


Block sizes: 49 (upstream exon), 42 (downstream exon)
Score: 14

TGCGGGTCTGTTGCGAACGCGACTGCGGCTTCCCGTGGTGCTCCTCTCCTGCTCCCTCTTCTTCCTCGCCGGCTTCTTCGGCTCGCTCCTCTTCACCCAGgtacgcgacg ... tgcggtgcagGATCCGGAGGAGGCGGATATGCCGGTGCCGAGAGAGCGGCTGTTGGAGGCGGCGTGGCCGGAGATGCCTTACGGCGAGTCCGGCGAGGCTGCGCCGTCCT


Block sizes: 49 (upstream exon), 48 (downstream exon)
Score: 305

TGCGGGTCTGTTGCGAACGCGACTGCGGCTTCCCGTGGTGCTCCTCTCCTGCTCCCTCTTCTTCCTCGCCGGCTTCTTCGGCTCGCTCCTCTTCACCCAGgtacgcgacg ... tgcggtgcagGATCCGGAGGAGGCGGATATGCCGGTGCCGAGAGAGCGGCTGTTGGAGGCGGCGTGGCCGGAGATGCCTTACGGCGAGTCCGGCGAGGCTGCGCCGTCCT




 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

gcgccgctcctgatctgggtgggctggctgtggtgcggtgggaggtgcggtgcagGATCCGGAGGAGGCGGATATGCCGGTGCCGAGAGAGCGGCTGTTGGAGGCGGCGTGGCCGGAGATGCCTTACGGCGAGTCCGGCGAGGCTGCGCCGTCCT
       tcctgat  putative branch site (score: 305)
















Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
        10        20        30        40        50        60        70        80        90        100       110       120       130       140       150       160       170       180       190       200       210       220 
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
gtacgcgacggcgagccccgagccacgttccgattcgtagcttccttgtagcgccgctcctgatctgggtgggctggctgtggtgcggtgggaggtgcggtgcagGATCCGGAGGAGGCGGATATGCCGGTGCCGAGAGAGCGGCTGTTGGAGGCGGCGTGGCCGGAGATGCCTTACGGCGAGTCCGGCGAGGCTGCGCCGTCCT

- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAGAT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -  GAGATG