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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

...cttggtaaaagacctgcaggaactcattttttctgttttgactaatgagtttcagttccatcagaattttaatttgtgttcatttctctaagtatttcagGCGTTTCATGAATCAGTATTTTCTACTAATAGCCTGCCTTCAGTTGTGGTCCCGTATCACCCCTGTCAGCCCTGCAACTACATGGGGTCCACTTATCATC

Basic information

species Zea mays
transcript GRMZM2G347447_T01
intron # 1
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GRMZM2G347447_T01 (Zea mays), 3'ss of exon 1
lower sequence: LOC_Os04g28460.1 (Oryza sativa), 3'ss of exon 1
-------cttggtaaaagacctgcaggaactcattttttctgttttgactaatgagtttcagttccatcagaattttaatttgtgttcatttctctaagtatttcagGCGTTTCATGAATCAGTATTTTCTACTAATAGCCTGCCTTCAGTTGTGGTCCCGTATCACCCCTGTCAGCCCTGCAACTACATGGGGTCCACTTATCATC
            |   | | ||     ||  || ||||  | |||      ||| || |||     ||    |||||||||      ||||||| | | |||| ||||||||||||||||||||||||||| ||||| |||||||||||||| |||||  ||||||| ||||| || ||||||||||||||||||||||||  ||||
ccgtgaatccattggtatatctatgctaaaccacttttcttcttt------atgcgtgtcatagagatatcgattttaattataacccatttctttgaatatt-cagGCGTTTCATGAATCAGTATTTTCTTCTAATCGCCTGCCTTCAGTTATGGTCAAGTATCACACCTGTTAGTCCTGCAACTACATGGGGTCCACTTGCCATC
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|93013258|gb|EB638778.1|EB638778
EST:     AAGTATACTCTGTGGAATTTTCTCCCGAAAAATTTATGGGAGCAATTCAG                         GCGTTTCATGAATCAGTATTTTCTACTAATAGCCTGCCTTCAGTTGTGGTC
genomic: AAGTATACTCTGTGGAATTTTCTCCCGAAAAATTTATGGGAGCAATTCAGgtttgtatct ... agtatttcagGCGTTTCATGAATCAGTATTTTCTACTAATAGCCTGCCTTCAGTTGTGGTC






















 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

tgagtttcagttccatcagaattttaatttgtgttcatttctctaagtatttcagGCGTTTCATGAATCAGTATTTTCTACTAATAGCCTGCCTTCAGTTGTGGTCCCGTATCACCCCTGTCAGCCCTGCAACTACATGGGGTCCACTTATCATC
                     ttttaat  putative branch site (score: 3)
                   aattttaatttgtgtt  TA-rich tract