1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' |
...agctgcaaacgcttacatggctgtatacagagcatacttttttttttctgtttcttttttgcaatgttgattatcttctcaccttctatctcaattgcagCATTTGGGCAGTCATCCACAAGCCCATTTGGTAACAACAACTCGTTTGGAACTCCCCAGGGATTTGGCCAGTCTTCCACTGCTGCCAACAATCCCTTTGC
species | Zea mays |
transcript | GRMZM2G344924_T01 |
intron # | 1 |
splice site | 3' |
intron type | U2 |
EST: AGAAGACAATAAGCTTCGGCATTCGGAAGCCATGTTCGGCTCCACCAATC CATTTGGGCAGTCATCCACAAGCCCATTTGGTAACAACAACTCGTTTGGAAEST: gi|71317826|gb|DR795678.1|DR795678
genomic: AGAAGACAATAAGCTTCGGCATTCGGAAGCCATGTTCGGCTCCACCAATCgtaagcgctc ... tcaattgcagCATTTGGGCAGTCATCCACAAGCCCATTTGGTAACAACAACTCGTTTGGAA
EST: AGAAGACAATAAGCTTCGGCATTCGGAAGCCATGTTCGGCTCCACCAATC CATTTGGGCAGTCATCCACAAGCCCATTTGGTAACAACAACTCGTTTGGAA
genomic: AGAAGACAATAAGCTTCGGCATTCGGAAGCCATGTTCGGCTCCACCAATCgtaagcgctc ... tcaattgcagCATTTGGGCAGTCATCCACAAGCCCATTTGGTAACAACAACTCGTTTGGAA
ttctgtttcttttttgcaatgttgattatcttctcaccttctatctcaattgcagCATTTGGGCAGTCATCCACAAGCCCATTTGGTAACAACAACTCGTTTGGAACTCCCCAGGGATTTGGCCAGTCTTCCACTGCTGCCAACAATCCCTTTGC
ttctcac putative branch site (score: 68)
ttatcttctcaccttc CT-rich tract
tttctttttt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| agctgcaaacgcttacatggctgtatacagagcatacttttttttttctgtttcttttttgcaatgttgattatcttctcaccttctatctcaattgcagCATTTGGGCAGTCATCCACAAGCCCATTTGGTAACAACAACTCGTTTGGAACTCCCCAGGGATTTGGCCAGTCTTCCACTGCTGCCAACAATCCCTTTGC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGCTGC
-gctgcaa
- - - - - - ttacatg
- - - - - - - - - -gctgtat
- - - - - - - - - - - - - - - -gcatact
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - tgttgat
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -caccttc