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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

...ctgcatcctctacagtagttagcacgttacgctattagtgtatccatgtatgcaaattcttgtgaagctaactggggtagacgttgtgatgacttggcagGTTCTCATAAGATTCCCAACTGGAGAGCGCAGAGAGCGGAGATTCTACAGTTCTGCAACCGTCGCTTCCCTCTATGACTATGTCGATTCTCTAGACTGCA

Basic information

species Zea mays
transcript GRMZM2G343688_T01
intron # 1
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GRMZM2G343688_T01 (Zea mays), 3'ss of exon 1
lower sequence: LOC_Os10g37630.1 (Oryza sativa), 3'ss of exon 3
-ctgcatcctctacagtagttagcacgttac-gctattagtgtat-ccatgtatgcaaattcttgtgaagctaactggggtagacgttgtgatgacttggcagGTTCTCATAAGATTCCCAACTGGAGAGCGCAGAGAGCGGAGATTCTACAGTTCTGCAACCGTCGCTTCCCTCTATGACTATGTCGATTCTCTAGACTGCA
 ||  |     ||    || ||   |   || |||  |  | |      | | ||||||||||| || | ||||    ||    |||  |||||| || | ||||||| |||||||| |||||||||||||||| |||  |||||||| |||||||  | ||| || |||| || ||||||||||| |||||| | |||||| 
tctttagatgttagcacagatatttctaaactgctgatgatctgcgttgtatctgcaaattctt-tggaactaataaagg--accgtgctgatgattttgtagGTTCTTATAAGATTTCCAACTGGAGAGCGCAAAGAAAGGAGATTCAACAGTTCCACTACCATCACTTCACTGTATGACTATGTTGATTCTTTGGACTGCT
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|86470852|gb|DY237222.1|DY237222
EST:     GTGCTGTGGTCATGGCTTCTACAAACCAGAGAATCGTGCTATTGCAGCAG                         GTTCTCATAAGATTCCCAACTGGAGAGCGCAGAGAGCGGAGATTCTACAGT
genomic: GTGCTGTGGTCATGGCTTCTACAAACCAGAGAATCGTGCTATTGCAGCAGgtatgatgtt ... gacttggcagGTTCTCATAAGATTCCCAACTGGAGAGCGCAGAGAGCGGAGATTCTACAGT






















 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

atgtatgcaaattcttgtgaagctaactggggtagacgttgtgatgacttggcagGTTCTCATAAGATTCCCAACTGGAGAGCGCAGAGAGCGGAGATTCTACAGTTCTGCAACCGTCGCTTCCCTCTATGACTATGTCGATTCTCTAGACTGCA
                    agctaac  putative branch site (score: 2)
        aaattctt  TA-rich tract