1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' | 12 5' 3' | 13 5' 3' | 14 5' 3' |
...actcaaataattattagagaccagtctggatcaacattactctatgtgctgactatatgactacgggaatctgagaacttgttttggtccatttgttaagGTACACTGAGATAAAAGTTCTAGCTGAAAACAACAGATTTGCTCTACATGCTGACAATATGACGATTCAGAGCATTTGATGGATGGTGCAACTGTTGAGT
species | Zea mays |
transcript | GRMZM2G343442_T01 |
intron # | 1 |
splice site | 3' |
intron type | U2 |
EST: CACCAGAAGCTCTGCCTCTCCATCGACATGGAGAACCAGCTGATCTACGG GTACACTGAGATAAAAGTTCTAGCTGAAAACAACAGATTTGCTCTACATGCEST: gi|211065130|gb|FL368206.1|FL368206
genomic: CACCAGAAGCTCTGCCTCTCCATCGACATGGAGAACCAGCTGATCTACGGgtgagccgcg ... atttgttaagGTACACTGAGATAAAAGTTCTAGCTGAAAACAACAGATTTGCTCTACATGC
EST: CACCAGAAGCTCTGCCTCTCCATCGACATGGAGAACCAGCTGATCTACGG GTACACTGAGATAAAAGTTCTAGCTGAAAACAACAGATTTGCTCTACATGC
genomic: CACCAGAAGCTCTGCCTCTCCATCGACATGGAGAACCAGCTGATCTACGGgtgagccgcg ... atttgttaagGTACACTGAGATAAAAGTTCTAGCTGAAAACAACAGATTTGCTCTACATGC
gtgctgactatatgactacgggaatctgagaacttgttttggtccatttgttaagGTACACTGAGATAAAAGTTCTAGCTGAAAACAACAGATTTGCTCTACATGCTGACAATATGACGATTCAGAGCATTTGATGGATGGTGCAACTGTTGAGT
tgctgac putative branch site (score: 37)
tccattt putative PPT
atttgttaa TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| actcaaataattattagagaccagtctggatcaacattactctatgtgctgactatatgactacgggaatctgagaacttgttttggtccatttgttaagGTACACTGAGATAAAAGTTCTAGCTGAAAACAACAGATTTGCTCTACATGCTGACAATATGACGATTCAGAGCATTTGATGGATGGTGCAACTGTTGAGT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGAGCA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GATGGA
actcaaa
- - - - - - - - - - - - -ctggatc
- - - - - - - - - - - - - - - - - - - - - - - tgctgac