1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' |
...ttgcactcactcaatgttgttatgtacaaatttaagtgcatcagagttgttgcttttatagtatgccaacatggataaccctgtgattacttttatgcagTCAAATTTGTCAAGCTACTGTTGATGCTCCAGATATAGTAGAAAACCATGGGAGAAGTTAGTGATGATAATTCCAACATGTCCTTTCTAAAAAGAATCGC
species | Zea mays |
transcript | GRMZM2G339336_T01 |
intron # | 1 |
splice site | 3' |
intron type | U2 |
EST: ACGGCCCCCGACCGATCGANNNNNNNNNNNNTCGGCGCGGCGAGGCGCAG TCAAATTTGTCAAGCTACTGTTGATGCTCCAGATATAGTAGAAAACCATGGEST: gi|211169734|gb|FL062253.1|FL062253
genomic: ACGGCCCCCGACCGATCGACCCCCCTCCCCCTCGGCGCGGCGAGGCGCAGgtgaggctcg ... ttttatgcagTCAAATTTGTCAAGCTACTGTTGATGCTCCAGATATAGTAGAAAACCATGG
EST: CGGCCCCCGACCGATCGACCTCCCCTCCCCCTCGGCGCGGCGAGGCGCAG TCAAATTTGTCAAGCTACTGTTGATGCTCCAGATATAGTAGAAAACCATGGEST: gi|149111542|gb|EE190675.2|EE190675
genomic: CGGCCCCCGACCGATCGACC-CCCCTCCCCCTCGGCGCGGCGAGGCGCAGgtgaggctcg ... ttttatgcagTCAAATTTGTCAAGCTACTGTTGATGCTCCAGATATAGTAGAAAACCATGG
EST: ACGGCCCCCGACCGATCGANNNNNNNNNNNNTCGGCGCGGCGAGGCGCAG TCAAATTTGTCAAGCTACTGTTGATGCTCCAGATATAGTAGAAAACCATGG
genomic: ACGGCCCCCGACCGATCGACCCCCCTCCCCCTCGGCGCGGCGAGGCGCAGgtgaggctcg ... ttttatgcagTCAAATTTGTCAAGCTACTGTTGATGCTCCAGATATAGTAGAAAACCATGG
gttgttgcttttatagtatgccaacatggataaccctgtgattacttttatgcagTCAAATTTGTCAAGCTACTGTTGATGCTCCAGATATAGTAGAAAACCATGGGAGAAGTTAGTGATGATAATTCCAACATGTCCTTTCTAAAAAGAATCGC
ggataac putative branch site (score: 286)
ttactttt putative PPT
ttttatagtat TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| ttgcactcactcaatgttgttatgtacaaatttaagtgcatcagagttgttgcttttatagtatgccaacatggataaccctgtgattacttttatgcagTCAAATTTGTCAAGCTACTGTTGATGCTCCAGATATAGTAGAAAACCATGGGAGAAGTTAGTGATGATAATTCCAACATGTCCTTTCTAAAAAGAATCGC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAGAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGAAGT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAAGAA
-tgcactc
- - - - - - - tgttgtt
- - - - - - - - - - - -gtacaaa
- - - - - - - - - - - - - - - - - - -gcatcag
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - gtatgcc
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - acatgga
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -tgtgatt