1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' |
...gcgcgaccggttcgctggtctaacggagtttctagctgggatttcttgttggagcgtcgctctccggcgcttatttcatttatatttgtctgtgcctcagGTTCACTGGCCAATTCGTTGCTTCGTGGGGCTTTGGAGTTTGGAGCCAATCTTGCCCCTTAAAGTGTCGGTGGCAGCGTTTTGTGATCATCATGAGCTTT
species | Zea mays |
transcript | GRMZM2G337425_T01 |
intron # | 1 |
splice site | 3' |
intron type | U2 |
EST: GCGAATCGCTGGCTCGACCCCGCGGCGGGAGGTATCCCGCCTTCGATCTG GTTCACTGGCCAATTCGTTGCTTCGTGGGGCTTTGGAGTTTGGAGCCAATCEST: gi|50332883|gb|CO528009.1|CO528009
genomic: GCGAATCGCTGGCTCGACCCCGCGGCGGGAGGTATCCCGCCTTCGATCTGgtgcgcgccc ... tgtgcctcagGTTCACTGGCCAATTCGTTGCTTCGTGGGGCTTTGGAGTTTGGAGCCAATC
EST: GCGAATCGCTGGCTCGACCCCGCGGCGGGAGGTATCCCGCCTTCGATCTG GTTCACTGGCCAATTCGTTGCTTCGTGGGGCTTTGGAGTTTGGAGCCAATCEST: gi|89755993|gb|DY686200.1|DY686200
genomic: GCGAATCGCTGGCTCGACCCCGCGGCGGGAGGTATCCCGCCTTCGATCTGgtgcgcgccc ... tgtgcctcagGTTCACTGGCCAATTCGTTGCTTCGTGGGGCTTTGGAGTTTGGAGCCAATC
EST: GCGAATCGCTGGCTCGACCCCGCGGCGGGAGGTATCCCGCCTTCGATCTG GTTCACTGGCCAATTCGTTGCTTCGTGGGGCTTTGGAGTTTGGAGCCAATCEST: gi|148931116|gb|EC873780.2|EC873780
genomic: GCGAATCGCTGGCTCGACCCCGCGGCGGGAGGTATCCCGCCTTCGATCTGgtgcgcgccc ... tgtgcctcagGTTCACTGGCCAATTCGTTGCTTCGTGGGGCTTTGGAGTTTGGAGCCAATC
EST: GCGAATCGCTGGCTCGACCCCGCGGCGGGAGGTATCCCGCCTTCGATCTG GTTCACTGGCCAATTCGTTGCTTCGTGGGGCTTTGGAGTTTGGAGCCAATCEST: gi|211089296|gb|FL241969.1|FL241969
genomic: GCGAATCGCTGGCTCGACCCCGCGGCGGGAGGTATCCCGCCTTCGATCTGgtgcgcgccc ... tgtgcctcagGTTCACTGGCCAATTCGTTGCTTCGTGGGGCTTTGGAGTTTGGAGCCAATC
EST: GCGAATCGCTGGCTCGACCCCGCGGCGGGAGGTATCCCG-CTTCGATCTG GTTCACTGGCCAATTCGTTGCTTCGTGGGGCTTTGGAGTTTGGAGCCAATCEST: gi|78083979|gb|DV512372.1|DV512372
genomic: GCGAATCGCTGGCTCGACCCCGCGGCGGGAGGTATCCCGCCTTCGATCTGgtgcgcgccc ... tgtgcctcagGTTCACTGGCCAATTCGTTGCTTCGTGGGGCTTTGGAGTTTGGAGCCAATC
EST: GCGAATCGCTGGCTCGACCCCGCGGCGGGAGGTATCCCGCCTTCGATCTG GTTCACTGGCCAATTCGTTGCTTCGTGGGGCTTTGGAGTTTGGAGCCAATCEST: gi|91048354|gb|EB158772.1|EB158772
genomic: GCGAATCGCTGGCTCGACCCCGCGGCGGGAGGTATCCCGCCTTCGATCTGgtgcgcgccc ... tgtgcctcagGTTCACTGGCCAATTCGTTGCTTCGTGGGGCTTTGGAGTTTGGAGCCAATC
EST: GCGAATCGCTGGCTCGACCCCGCGGCGGGAGGTATCCCGCCTTCGATCTG GTTCACTGGCCAATTCGTTGCTTCGTGGGGCTTTGGAGTTTGGAGCCAATCEST: gi|91876517|gb|EB406474.1|EB406474
genomic: GCGAATCGCTGGCTCGACCCCGCGGCGGGAGGTATCCCGCCTTCGATCTGgtgcgcgccc ... tgtgcctcagGTTCACTGGCCAATTCGTTGCTTCGTGGGGCTTTGGAGTTTGGAGCCAATC
EST: GCGAATCGCTGGCTCGACCCCGCGGCGGGAGGTATCCCGCCTTCGATCTG GTTCACTGGCCAATTCGTTGCTTCGTGGGGCTTTGGAGTTTGGAGCCAATCEST: gi|88756244|gb|DY540385.1|DY540385
genomic: GCGAATCGCTGGCTCGACCCCGCGGCGGGAGGTATCCCGCCTTCGATCTGgtgcgcgccc ... tgtgcctcagGTTCACTGGCCAATTCGTTGCTTCGTGGGGCTTTGGAGTTTGGAGCCAATC
EST: GCGAATCGCTGGCTCGACCCCGCGGCGGGAGGTATCCCGCCTTCGATCTG GTTCACTGGCCAATTCGTTGCTTCGTGGGGCTTTGGAGTTTGGAGCCAATCEST: gi|211086849|gb|FL241965.1|FL241965
genomic: GCGAATCGCTGGCTCGACCCCGCGGCGGGAGGTATCCCGCCTTCGATCTGgtgcgcgccc ... tgtgcctcagGTTCACTGGCCAATTCGTTGCTTCGTGGGGCTTTGGAGTTTGGAGCCAATC
EST: GCGAATCGCTGGCTCGACCCCGCGGCGGGAGGTATCCCG-CTTCGATCTG GTTCACTGGCCAATTCGTTGCTTCGTGGGGCTTTGGAGTTTGGAGCCAATCEST: gi|211089297|gb|FL241970.1|FL241970
genomic: GCGAATCGCTGGCTCGACCCCGCGGCGGGAGGTATCCCGCCTTCGATCTGgtgcgcgccc ... tgtgcctcagGTTCACTGGCCAATTCGTTGCTTCGTGGGGCTTTGGAGTTTGGAGCCAATC
EST: GCGAATCGCTGGCTCGACCCCGCGGCGGGAGGTATCCCG-CTTCGATCTG GTTCACTGGCCAATTCGTTGCTTCGTGGGGCTTTGGAGTTTGGAGCCAATCEST: gi|211089293|gb|FL241966.1|FL241966
genomic: GCGAATCGCTGGCTCGACCCCGCGGCGGGAGGTATCCCGCCTTCGATCTGgtgcgcgccc ... tgtgcctcagGTTCACTGGCCAATTCGTTGCTTCGTGGGGCTTTGGAGTTTGGAGCCAATC
EST: GCGAATCGCTGGCTCGACCCCGCGGCGGGAGGTATCCCGCCTTCGATCTG GTTCACTGGCCAATTCGTTGCTTCGTGGGGCTTTGGAGTTTGGAGCCAATCEST: gi|86467325|gb|DY233695.1|DY233695
genomic: GCGAATCGCTGGCTCGACCCCGCGGCGGGAGGTATCCCGCCTTCGATCTGgtgcgcgccc ... tgtgcctcagGTTCACTGGCCAATTCGTTGCTTCGTGGGGCTTTGGAGTTTGGAGCCAATC
EST: GCGAATCGCTGGCTCGACCCCGCGGCGGGAGGTATCCCGCCTTCGATCTG GTTCACTGGCCAATTCTTTGTTTCGGGGGGCTTTGGAGTTTGGAGCCAATCEST: gi|76288198|gb|DV027766.1|DV027766
genomic: GCGAATCGCTGGCTCGACCCCGCGGCGGGAGGTATCCCGCCTTCGATCTGgtgcgcgccc ... tgtgcctcagGTTCACTGGCCAATTCGTTGCTTCGTGGGGCTTTGGAGTTTGGAGCCAATC
EST: GCGAATCGCTGGCTCGACCCCGCGGCGGGAGGTATCCCGCCTTCGATCTG GTTCACTGGCCAATTCGTTGCTTCGTGGGGCTTTGGAGTTTGGAGCCAATCEST: gi|211089295|gb|FL241968.1|FL241968
genomic: GCGAATCGCTGGCTCGACCCCGCGGCGGGAGGTATCCCGCCTTCGATCTGgtgcgcgccc ... tgtgcctcagGTTCACTGGCCAATTCGTTGCTTCGTGGGGCTTTGGAGTTTGGAGCCAATC
EST: GCGAATCGCTGGCTCGACCCCGCGGCGGGAGGTATCCCGCCTTCGATCTG GTTCACTGGCCAATTCGTTGCTTCGTGGGGCTTTGGAGTTTGGAGCCAATCEST: gi|211539417|gb|FK948581.1|FK948581
genomic: GCGAATCGCTGGCTCGACCCCGCGGCGGGAGGTATCCCGCCTTCGATCTGgtgcgcgccc ... tgtgcctcagGTTCACTGGCCAATTCGTTGCTTCGTGGGGCTTTGGAGTTTGGAGCCAATC
EST: GCGAATCGCTGGCTCGACCCCGCGGCGGGAGGTATCCCG-CTTCGATCTG GTTCACTGGCCAATTCGTTGCTTCGTGGGGCTTTGGAGTTTGGAGCCAATCEST: gi|78085073|gb|DV513466.1|DV513466
genomic: GCGAATCGCTGGCTCGACCCCGCGGCGGGAGGTATCCCGCCTTCGATCTGgtgcgcgccc ... tgtgcctcagGTTCACTGGCCAATTCGTTGCTTCGTGGGGCTTTGGAGTTTGGAGCCAATC
EST: GCGAATCGCTGGCTCGACCCCGCGGCGGGAGGTATCCCGCCTTCGATCTG GTTCACTGGCCAATTCGTTGCTTCGTGGGGCTTTGGAGTTTGGAGCCAATCEST: gi|101389965|gb|EB816914.1|EB816914
genomic: GCGAATCGCTGGCTCGACCCCGCGGCGGGAGGTATCCCGCCTTCGATCTGgtgcgcgccc ... tgtgcctcagGTTCACTGGCCAATTCGTTGCTTCGTGGGGCTTTGGAGTTTGGAGCCAATC
EST: GCGAATCGCTGGCTCGACCCCGCGGCGGGAGGTATCCCGCCTTCGATCTG GTTCACTGGCCAATTCGTTGCTTCGTGGGGCTTTGGAGTTTGGAGCCAATCEST: gi|211089294|gb|FL241967.1|FL241967
genomic: GCGAATCGCTGGCTCGACCCCGCGGCGGGAGGTATCCCGCCTTCGATCTGgtgcgcgccc ... tgtgcctcagGTTCACTGGCCAATTCGTTGCTTCGTGGGGCTTTGGAGTTTGGAGCCAATC
EST: GCGAATCGCTGGCTCGACCCCGCGGCGGGAGGTATCCCGCTTTCGATCTG GTTCACTGGCCAATTCGTTGCTTCGTGGGGCTTTGGAGTTTGGAGCCAATC
genomic: GCGAATCGCTGGCTCGACCCCGCGGCGGGAGGTATCCCGCCTTCGATCTGgtgcgcgccc ... tgtgcctcagGTTCACTGGCCAATTCGTTGCTTCGTGGGGCTTTGGAGTTTGGAGCCAATC
ttgttggagcgtcgctctccggcgcttatttcatttatatttgtctgtgcctcagGTTCACTGGCCAATTCGTTGCTTCGTGGGGCTTTGGAGTTTGGAGCCAATCTTGCCCCTTAAAGTGTCGGTGGCAGCGTTTTGTGATCATCATGAGCTTT
tttgtct CT-rich tract
ttatttcatttatatt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gcgcgaccggttcgctggtctaacggagtttctagctgggatttcttgttggagcgtcgctctccggcgcttatttcatttatatttgtctgtgcctcagGTTCACTGGCCAATTCGTTGCTTCGTGGGGCTTTGGAGTTTGGAGCCAATCTTGCCCCTTAAAGTGTCGGTGGCAGCGTTTTGTGATCATCATGAGCTTT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGCTT
- - - - - - -gctggtc
- - - - - - - - - - - - - - - - -agctggg
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -tttcatt