1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' |
gtccgtgcaattaattcctagcttcccggcccttttatttgcctgcatgcttcaattcggacgaattcgatcggacgaaatcaaatttgctaaccttaattttataataataataatataagGATCGAGGACGTGATCACGAGGTACATCAATCTCCCGGAGCACGACAGAGGAGG
species | Zea mays |
transcript | GRMZM2G334225_T02 |
intron # | 1 |
splice site | 3' |
intron type | U2 |
EST: ATCATGTTCTCGCCCTCCAATCGCCTCAGCCACTTCTCCGGCAGGCGCAG GATCGAGGACGTGATCACGAGGTACATCAATCTCCCGGAGCACGACAGAGGEST: gi|211397001|gb|FL238526.1|FL238526
genomic: ATCATGTTCTCGCCCTCCAATCGCCTCAGCCACTTCTCCGGCAGGCGCAGgtccgtgcaa ... ataatataagGATCGAGGACGTGATCACGAGGTACATCAATCTCCCGGAGCACGACAGAGG
EST: ATCATGTTCTCGCCCTCCAATCGCCTCAGCCACTTCTCCGGCAGGCGCAG GATCGAGGACGTGATCACGAGGTACATCAATCTCCCGGAGCACGACAGAGGEST: gi|211397005|gb|FL238530.1|FL238530
genomic: ATCATGTTCTCGCCCTCCAATCGCCTCAGCCACTTCTCCGGCAGGCGCAGgtccgtgcaa ... ataatataagGATCGAGGACGTGATCACGAGGTACATCAATCTCCCGGAGCACGACAGAGG
EST: ATCATGTTCTCGCCCTCCAATCGCCTCAGCCACTTCTCCGGCAGGCGCAG GATCGAGGACGTGATCACGAGGTACATCAATCTCCCGGAGCACGACAGAGGEST: gi|71444358|gb|DR825408.1|DR825408
genomic: ATCATGTTCTCGCCCTCCAATCGCCTCAGCCACTTCTCCGGCAGGCGCAGgtccgtgcaa ... ataatataagGATCGAGGACGTGATCACGAGGTACATCAATCTCCCGGAGCACGACAGAGG
EST: ATCATGTTCTCGCCCTCCAATCGCCTCAGCCACTTCTCCGGCAGGCGCAG GATCGAGGACGTGATCACGAGGTACATCAATCTCCCGGAGCACGACAGAGGEST: gi|211520159|gb|FL238533.1|FL238533
genomic: ATCATGTTCTCGCCCTCCAATCGCCTCAGCCACTTCTCCGGCAGGCGCAGgtccgtgcaa ... ataatataagGATCGAGGACGTGATCACGAGGTACATCAATCTCCCGGAGCACGACAGAGG
EST: ATCATGTTCTCGCCCTCCAATCGCCTCAGCCACTTCTCCGGCAGGCGCAG GATCGAGGACGTGATCACGAGGTACATCAATCTCCCGGAGCACGACAGAGGEST: gi|211520161|gb|FL238535.1|FL238535
genomic: ATCATGTTCTCGCCCTCCAATCGCCTCAGCCACTTCTCCGGCAGGCGCAGgtccgtgcaa ... ataatataagGATCGAGGACGTGATCACGAGGTACATCAATCTCCCGGAGCACGACAGAGG
EST: ATCATGTTCTCGCCCTCCAATCGCCTCAGCCACTTCTCCGGCAGGCGCAG GATCGAGGACGTGATCACGAGGTACATCAATCTCCCGGAGCACGACAGANGEST: gi|211397003|gb|FL238528.1|FL238528
genomic: ATCATGTTCTCGCCCTCCAATCGCCTCAGCCACTTCTCCGGCAGGCGCAGgtccgtgcaa ... ataatataagGATCGAGGACGTGATCACGAGGTACATCAATCTCCCGGAGCACGACAGAGG
EST: ATCATGTTCTCGCCCTCCAATCGCCTCAGCCACTTCTCCGGCAGGCGCAG GATCGAGGACGTGATCACGAGGTACATCAATCTCCCGGAGCACGACAGAGG
genomic: ATCATGTTCTCGCCCTCCAATCGCCTCAGCCACTTCTCCGGCAGGCGCAGgtccgtgcaa ... ataatataagGATCGAGGACGTGATCACGAGGTACATCAATCTCCCGGAGCACGACAGAGG
cgatcggacgaaatcaaatttgctaaccttaattttataataataataatataagGATCGAGGACGTGATCACGAGGTACATCAATCTCCCGGAGCACGACAGAGGAGG
aaatttgctaacctta TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtccgtgcaattaattcctagcttcccggcccttttatttgcctgcatgcttcaattcggacgaattcgatcggacgaaatcaaatttgctaaccttaattttataataataataatataagGATCGAGGACGTGATCACGAGGTACATCAATCTCCCGGAGCACGACAGAGGAGG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAGCA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGAGGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGGAG