1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' |
...cacatgcctcaaataaggtttcaacctatatcaaaatggattacatcttgttttgccagaagtaatttaggcttccattgttaccattatacctatgcagGATCAGCTCTACCACCTGCGCATCCACCTGACATTCCTGCATTTAGAAAGCCCAAGATTTTGGCACCAGCGCCTAGTCAATCGCTGCTACCTCCACCAAC
species | Zea mays |
transcript | GRMZM2G330298_T01 |
intron # | 1 |
splice site | 3' |
intron type | U2 |
tcttgttttgccagaagtaatttaggcttccattgttaccattatacctatgcagGATCAGCTCTACCACCTGCGCATCCACCTGACATTCCTGCATTTAGAAAGCCCAAGATTTTGGCACCAGCGCCTAGTCAATCGCTGCTACCTCCACCAAC
aagtaattta TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| cacatgcctcaaataaggtttcaacctatatcaaaatggattacatcttgttttgccagaagtaatttaggcttccattgttaccattatacctatgcagGATCAGCTCTACCACCTGCGCATCCACCTGACATTCCTGCATTTAGAAAGCCCAAGATTTTGGCACCAGCGCCTAGTCAATCGCTGCTACCTCCACCAAC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCTGCT
-acatgcc
- - - - -caaataag
- - - - - - - - - - - - - - -atcaaaa
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - gcttcca