ERISdb: a Database of Plant Splice Sites

General
Orthologs
EST
RNA-Seq
PPT, BS, UA-tract

Sequence

atgc intronic sequence ATGC exonic sequence

gtgcggcgatccccatcccgagatcacgctcctgcgtggtcctgtttgtatttttagtttctttttctgattttttttcgcaaaaagataattttggggtttattcgtggagcagGATTGCAACGGCAAGGAAGTGAGCCTGGAAACCTACAAGGGGAAGGTCCTCCTTGTTGTTAACGTCGCCTCCAAATG

Basic information

species	Zea mays
transcript	GRMZM2G329144_T01
intron #	1
splice site	3'
intron type	U2

Orthologous splice sites

atgc intronic sequence ATGC exonic sequence

upper sequence: GRMZM2G329144_T02 (Zea mays), 3'ss of exon 1
lower sequence: LOC_Os03g24380.1 (Oryza sativa), 3'ss of exon 1

gtgcggcgatccccatcccgagatcacgctc-ctgcgtggtcctgtt-tgtatttttagt--ttctttttctgattttttttcgcaaaaagataattttggggtttattcgtggagcagGATTGCAACGGCAAGGAAGTGAGCCTGGAAACCTACAAGGGGAAGGTCCTCCTTGTTGTTAACGTCGCCTCCAAATG
|| |||||||| ||  |||     | |   | | ||  | |   |    | ||||||  |  || |||||||  |||| |||          |  |||    |||| ||  | ||||||||||||||||||||||| ||||||||||| |  |||||||||||||| ||  | || || |||||||||||||||||
gtccggcgatctcccccccatctcctcttccgccgccggattacgcgacggatttttgctgattttttttctcgttttcttttttc------ttttttaattgttttttttttgagcagGATTGCAACGGCAAGGAGGTGAGCCTGGAGATGTACAAGGGGAAGGTGCTAATCGTCGTCAACGTCGCCTCCAAATG

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments

ATGC    EST sequence
ATGC    genomic sequence (exon)
ATGC    genomic sequence (truncated intron)

EST: gi|211496099|gb|FL377912.1|FL377912

EST:     GGGCGGCCGAATCCGTGCCGGAGACCTCCATACACGAATTCACCGTCAAG                         GATTGCAACGGCAAGGAAGTGAGCCTGGAAACCTACAAGGGGAAGGTCCTC
genomic: GGGCGGCCGAATCCGTGCCGGAGACCTCCATACACGAATTCACCGTCAAGgtgcggcgat ... cgtggagcagGATTGCAACGGCAAGGAAGTGAGCCTGGAAACCTACAAGGGGAAGGTCCTC

EST: gi|211131056|gb|FL391854.1|FL391854

EST:     GGGCGG-CGAATCCGTGCCGGAGACCTCCATACACGAATTCACCGTCAAG                         GATTGCAACGGCAAGGAAGTGAGCCTGGAAACCTACAAGGGGAAGGTCCTC
genomic: GGGCGGCCGAATCCGTGCCGGAGACCTCCATACACGAATTCACCGTCAAGgtgcggcgat ... cgtggagcagGATTGCAACGGCAAGGAAGTGAGCCTGGAAACCTACAAGGGGAAGGTCCTC

EST: gi|211501843|gb|FL388426.1|FL388426

EST:     GGGCGGCCGAATCCGTGCCGGAGACCTCCATACACGAATTCACCGTCAAG                         GATTGCAACGGCAAGGAAGTGAGCCTGGAAACCTACAAGGGGAAGGTCGTC
genomic: GGGCGGCCGAATCCGTGCCGGAGACCTCCATACACGAATTCACCGTCAAGgtgcggcgat ... cgtggagcagGATTGCAACGGCAAGGAAGTGAGCCTGGAAACCTACAAGGGGAAGGTCCTC

EST: gi|211500170|gb|FL426488.1|FL426488

EST:     GGGCGGCCGAATCCGTGCCGGAGACCTCCATACACGAATTCACCGTCAAG                         GATTGCAACGGCAAGGAAGTGAGCCTGGAAACCTACAAGGGGAARGTCCTC
genomic: GGGCGGCCGAATCCGTGCCGGAGACCTCCATACACGAATTCACCGTCAAGgtgcggcgat ... cgtggagcagGATTGCAACGGCAAGGAAGTGAGCCTGGAAACCTACAAGGGGAAGGTCCTC

EST: gi|211084683|gb|FL387358.1|FL387358

EST:     GGGCGGCCGAATCCGTGCCGGAGACCTCCATACACGAATTCACCGTCAAG                         GATTGCAACGGCAAGGAAGTGAGCCTGGAAACCTACAAGGGGAAGGTCCTC
genomic: GGGCGGCCGAATCCGTGCCGGAGACCTCCATACACGAATTCACCGTCAAGgtgcggcgat ... cgtggagcagGATTGCAACGGCAAGGAAGTGAGCCTGGAAACCTACAAGGGGAAGGTCCTC

EST: gi|22545491|gb|BU097850.1|BU097850

EST:     GGGCGGCC-AATCCGTGCCGGAGACCTCCATACACGAATTCACCG-CAAG                         GATTGCAACGGCAAGGAAGTGAGCCTGGAAACCTACAAGGGGAAGGTCCTC
genomic: GGGCGGCCGAATCCGTGCCGGAGACCTCCATACACGAATTCACCGTCAAGgtgcggcgat ... cgtggagcagGATTGCAACGGCAAGGAAGTGAGCCTGGAAACCTACAAGGGGAAGGTCCTC

EST: gi|211530013|gb|FL385894.1|FL385894

EST:     GGGCGGCCGAATCCGTGCCGGAGACCTCCATACACGAATTCACCGTCAAG                         GATTGCAACGGCAAGGAAGTGAGCCTGGAAACCTACAAGGAGAAGGTCCTC
genomic: GGGCGGCCGAATCCGTGCCGGAGACCTCCATACACGAATTCACCGTCAAGgtgcggcgat ... cgtggagcagGATTGCAACGGCAAGGAAGTGAGCCTGGAAACCTACAAGGGGAAGGTCCTC

EST: gi|211520783|gb|FL373488.1|FL373488

EST:     GGGCGGCCGAATCCGTGCCGGAGACCTCCATACACGAATTCACCGTCAAG                         GATTGCAACGGCAAGGAAGTGAGCCTGGAAACCTACAAGGGGAAGGTCCTC
genomic: GGGCGGCCGAATCCGTGCCGGAGACCTCCATACACGAATTCACCGTCAAGgtgcggcgat ... cgtggagcagGATTGCAACGGCAAGGAAGTGAGCCTGGAAACCTACAAGGGGAAGGTCCTC

EST: gi|211225829|gb|FL402237.1|FL402237

EST:     GGGCGGCCGAATCCGTGCCGGAGACCTCCATACACGAATTCACCGTCAAG                         GATTGCAACGGCAAGGAAGTGAGCCTGGAAACCTACAAGGGGAAGGTCCTC
genomic: GGGCGGCCGAATCCGTGCCGGAGACCTCCATACACGAATTCACCGTCAAGgtgcggcgat ... cgtggagcagGATTGCAACGGCAAGGAAGTGAGCCTGGAAACCTACAAGGGGAAGGTCCTC

EST: gi|211329903|gb|FL381786.1|FL381786

EST:     GGGCGGCCGAATCCGTGCCGGAGACCTCCATACACGAATTCACCGTCAAG                         GATTGCAACGGCAAGGAAGTGAGCCTGGAAACCTACAAGGGGAAGGTCCTC
genomic: GGGCGGCCGAATCCGTGCCGGAGACCTCCATACACGAATTCACCGTCAAGgtgcggcgat ... cgtggagcagGATTGCAACGGCAAGGAAGTGAGCCTGGAAACCTACAAGGGGAAGGTCCTC

EST: gi|211292210|gb|FL380933.1|FL380933

EST:     GGGCGGCCGAATCCGTGCCGGAGACCTCCATACACGAATTCACCGTCAAG                         GATTGCAACGGCAAGGAAGTGAGCCTGGAAACCTACAAGGGGAAGGTCCTC
genomic: GGGCGGCCGAATCCGTGCCGGAGACCTCCATACACGAATTCACCGTCAAGgtgcggcgat ... cgtggagcagGATTGCAACGGCAAGGAAGTGAGCCTGGAAACCTACAAGGGGAAGGTCCTC

EST: gi|211017372|gb|FL408588.1|FL408588

EST:     GGGCGGCCGAATCCGTGCCGGAGACCTCCATACACGAATTCACCGTCAAG                         GATTGCAACGGCAAGGAAGTGAGCCTGGAAACCTACAAGGGGAAGGTCCTC
genomic: GGGCGGCCGAATCCGTGCCGGAGACCTCCATACACGAATTCACCGTCAAGgtgcggcgat ... cgtggagcagGATTGCAACGGCAAGGAAGTGAGCCTGGAAACCTACAAGGGGAAGGTCCTC

EST: gi|211085703|gb|FL420026.1|FL420026

EST:     GGGCGGCCGAATCCGTGCCGGAGACCTCCATACACGAATTCACCGTCAAG                         GATTGCAACGGCAAGGAA
genomic: GGGCGGCCGAATCCGTGCCGGAGACCTCCATACACGAATTCACCGTCAAGgtgcggcgat ... cgtggagcagGATTGCAACGGCAAGGAA

EST: gi|101391621|gb|EB817747.1|EB817747

EST:     GGGCGGCCGAATCCGTGCCGGAGACCTCCATACACGAATTCACCGTCAAG                         GATTGCAACGGCAAGGAAGTGAGCCTGGAAACCTACAAGGGGAAGGTCCTC
genomic: GGGCGGCCGAATCCGTGCCGGAGACCTCCATACACGAATTCACCGTCAAGgtgcggcgat ... cgtggagcagGATTGCAACGGCAAGGAAGTGAGCCTGGAAACCTACAAGGGGAAGGTCCTC

EST: gi|211278589|gb|FL376801.1|FL376801

EST:     GGGCGGCCGAATCCGTGCCGGAGACCTCCATACACGAATTCACCGTCAAG                         GATTGCAACGGCAAGGAAGTGAGCCTGGAAACCTACAAGGGGAAGGTCCTC
genomic: GGGCGGCCGAATCCGTGCCGGAGACCTCCATACACGAATTCACCGTCAAGgtgcggcgat ... cgtggagcagGATTGCAACGGCAAGGAAGTGAGCCTGGAAACCTACAAGGGGAAGGTCCTC

EST: gi|211060112|gb|FL393160.1|FL393160

EST:     GGGCGGCCGAATCCGTGCCGGAGACCTCCATACACGAATTCACCGTCAAG                         GATTGCAACGGCAAGGAAGTGAGCCTGGAAACCTACAAGGGGAAGGTCCTC
genomic: GGGCGGCCGAATCCGTGCCGGAGACCTCCATACACGAATTCACCGTCAAGgtgcggcgat ... cgtggagcagGATTGCAACGGCAAGGAAGTGAGCCTGGAAACCTACAAGGGGAAGGTCCTC

EST: gi|211009248|gb|FL416491.1|FL416491

EST:     GGGCGGCCGAATCCGTGCCGGAGACCTCCATACACGAATTCACCGTCAAG                         GATTGCAACGGCAAGGAAGTGAGCCTGGAAACCTACAAGGGGAAGGTCCTC
genomic: GGGCGGCCGAATCCGTGCCGGAGACCTCCATACACGAATTCACCGTCAAGgtgcggcgat ... cgtggagcagGATTGCAACGGCAAGGAAGTGAGCCTGGAAACCTACAAGGGGAAGGTCCTC

EST: gi|211530055|gb|FL388002.1|FL388002

EST:     GGGCGGCCGAATCCGTGCCGGAGACCTCCATACACGAATTCACCGTCAAG                         GATTGCAACGGCAAGGAAGTGAGCCTGGAAACCTACAAGGGGAAGGTCCTC
genomic: GGGCGGCCGAATCCGTGCCGGAGACCTCCATACACGAATTCACCGTCAAGgtgcggcgat ... cgtggagcagGATTGCAACGGCAAGGAAGTGAGCCTGGAAACCTACAAGGGGAAGGTCCTC

EST: gi|211525016|gb|FL424286.1|FL424286

EST:     GGGCGGCCGAATCCGTGCCGGAGACCTCCATACACGAATTCACCGTCAAG                         GATTGCAACGGCAAGGAAGTGAGCCTGGAAACCTACAAGGGGAAGGTCCTC
genomic: GGGCGGCCGAATCCGTGCCGGAGACCTCCATACACGAATTCACCGTCAAGgtgcggcgat ... cgtggagcagGATTGCAACGGCAAGGAAGTGAGCCTGGAAACCTACAAGGGGAAGGTCCTC

EST: gi|211284108|gb|FL384407.1|FL384407

EST:     GGGCGGCCGAATCCGTGCCGGAGACCTCCATACACGAATTCACCGTCAAG                         GATTGCAACGGCAAGGAAGTGAGCCTGGAAACCTACAAGGGGAAGGTCCTC
genomic: GGGCGGCCGAATCCGTGCCGGAGACCTCCATACACGAATTCACCGTCAAGgtgcggcgat ... cgtggagcagGATTGCAACGGCAAGGAAGTGAGCCTGGAAACCTACAAGGGGAAGGTCCTC

EST: gi|211214723|gb|FL394680.1|FL394680

EST:     GGGCGGCCGAATCCGTGCCGGAGACCTCCATACACGAATTCACCGTCAAG                         GATTGCAACGGCAAGGAAGTGAGCCTGGAAACCTACAAGGGGAAGGTCCTC
genomic: GGGCGGCCGAATCCGTGCCGGAGACCTCCATACACGAATTCACCGTCAAGgtgcggcgat ... cgtggagcagGATTGCAACGGCAAGGAAGTGAGCCTGGAAACCTACAAGGGGAAGGTCCTC

EST: gi|8367944|gb|BE050889.1|BE050889

EST:     GGGCGGCCGAATCCGTGCCGGAGACCTCCATACACGAATTCACCGTCAAG                         GATTGCAACGGCAAGGAAGTGAGCCTGTAAACCTACAAGGGGAAGGTCCTC
genomic: GGGCGGCCGAATCCGTGCCGGAGACCTCCATACACGAATTCACCGTCAAGgtgcggcgat ... cgtggagcagGATTGCAACGGCAAGGAAGTGAGCCTGGAAACCTACAAGGGGAAGGTCCTC

EST: gi|211458918|gb|FL402421.1|FL402421

EST:     GGGCGGCCGAATCCGTGCCGGAGACCTCCATACACGAATTCACCGTCAAG                         GATTGCAACGGCAAGGAAGTGAGCCTGGAAACCTACAAGGGGAAGGTCCTC
genomic: GGGCGGCCGAATCCGTGCCGGAGACCTCCATACACGAATTCACCGTCAAGgtgcggcgat ... cgtggagcagGATTGCAACGGCAAGGAAGTGAGCCTGGAAACCTACAAGGGGAAGGTCCTC

EST: gi|211147264|gb|FL387786.1|FL387786

EST:     GGGCGGCCGAATCCATGCCGGAGACCTCCATACACGAATTCACCGTCAAG                         GATTGCAACGGCAAGGAAGTGAGCCTGGAAACCTACAAGGGGAAGGTCCTC
genomic: GGGCGGCCGAATCCGTGCCGGAGACCTCCATACACGAATTCACCGTCAAGgtgcggcgat ... cgtggagcagGATTGCAACGGCAAGGAAGTGAGCCTGGAAACCTACAAGGGGAAGGTCCTC

EST: gi|60356015|gb|DN222988.1|DN222988

EST:     GGGCGGCCGAATCCGTGCCGGAGACCTCCATACACGAATTCACCGTCAAG                         GATTGCAACGGCAAGGAAGTGAGCCTGGAAACCTACAAGGGGAAGGTCCTC
genomic: GGGCGGCCGAATCCGTGCCGGAGACCTCCATACACGAATTCACCGTCAAGgtgcggcgat ... cgtggagcagGATTGCAACGGCAAGGAAGTGAGCCTGGAAACCTACAAGGGGAAGGTCCTC

EST: gi|211337056|gb|FL419792.1|FL419792

EST:     GGGCGGCCGAATCCGTGCCGGAGACCTCCATACACGAATTCACCGTCAAG                         GATTGCAACGGCAAGGAAGTGAGCCTGGAAACCTACAAGGGGAAGGTCCTC
genomic: GGGCGGCCGAATCCGTGCCGGAGACCTCCATACACGAATTCACCGTCAAGgtgcggcgat ... cgtggagcagGATTGCAACGGCAAGGAAGTGAGCCTGGAAACCTACAAGGGGAAGGTCCTC

EST: gi|67011682|gb|CO440431.1|CO440431

EST:     GGGCGGCCGAATCCGTGCCGGAGACCTCCATACACGAATTCACCGTCAAG                         GATTGCAACGGCAAGGAAGTGAGCCTGGAAACCTACAAGGGGAAGGTCCTC
genomic: GGGCGGCCGAATCCGTGCCGGAGACCTCCATACACGAATTCACCGTCAAGgtgcggcgat ... cgtggagcagGATTGCAACGGCAAGGAAGTGAGCCTGGAAACCTACAAGGGGAAGGTCCTC

EST: gi|60358353|gb|DN225326.1|DN225326

EST:     TTCACCGTCAAG                         GATTGCAACGGCAAGGAAGTGAGCCTGGAAACCTACAAGGGGAAGGTCCTC
genomic: TTCACCGTCAAGgtgcggcgat ... cgtggagcagGATTGCAACGGCAAGGAAGTGAGCCTGGAAACCTACAAGGGGAAGGTCCTC

EST: gi|211518880|gb|FL413873.1|FL413873

EST:     GGGCGGCCGAATCCGTGCCGGAGACCTCCATACACGAATTCACCGTCAAG                         GATTGCAACGGCAAGGAAGTGAGCCTGGAAACCTACAAGGGGAAGGTCCTC
genomic: GGGCGGCCGAATCCGTGCCGGAGACCTCCATACACGAATTCACCGTCAAGgtgcggcgat ... cgtggagcagGATTGCAACGGCAAGGAAGTGAGCCTGGAAACCTACAAGGGGAAGGTCCTC

EST: gi|211063314|gb|FL403455.1|FL403455

EST:     GGGCGGCCGAATCCGTGCCGGAGACCTCCATACACGAATTCACCGTCAAG                         GATTGCAACGGCAAGGAAGTGAGCCTGGAAACCTACAAGGGGAAGGTCCTC
genomic: GGGCGGCCGAATCCGTGCCGGAGACCTCCATACACGAATTCACCGTCAAGgtgcggcgat ... cgtggagcagGATTGCAACGGCAAGGAAGTGAGCCTGGAAACCTACAAGGGGAAGGTCCTC

EST: gi|116822363|gb|EC865760.1|EC865760

EST:     GGGCGGCCGAATCCGTGCCGGAGACCTCCATACACGAATTCACCGTCAAG                         GATTGCAACGGCAAGGAAGTGAGCCTGGAAACCTACAAGGGGAAGGTCGTC
genomic: GGGCGGCCGAATCCGTGCCGGAGACCTCCATACACGAATTCACCGTCAAGgtgcggcgat ... cgtggagcagGATTGCAACGGCAAGGAAGTGAGCCTGGAAACCTACAAGGGGAAGGTCCTC

EST: gi|211429056|gb|FL404563.1|FL404563

EST:     GGGCGGCCGAATCCGTGCCGGAGACCTCCATACACGAATTCACCGTCAAG                         GATTGCAACGGCAAGGAAGTGAGCCTGGAAACCTACAAGGGGAAGGTCGTC
genomic: GGGCGGCCGAATCCGTGCCGGAGACCTCCATACACGAATTCACCGTCAAGgtgcggcgat ... cgtggagcagGATTGCAACGGCAAGGAAGTGAGCCTGGAAACCTACAAGGGGAAGGTCCTC

EST: gi|211065174|gb|FL369022.1|FL369022

EST:     GGGCGGCCGAATCCGTGCCGGAGACCTCCATACACGAATTCACCGTCAAG                         GATTGCAACGGCAAGGAAGTGAGCCTGGAAACCTACAAGGGGAAGGTCCTC
genomic: GGGCGGCCGAATCCGTGCCGGAGACCTCCATACACGAATTCACCGTCAAGgtgcggcgat ... cgtggagcagGATTGCAACGGCAAGGAAGTGAGCCTGGAAACCTACAAGGGGAAGGTCCTC

EST: gi|211082960|gb|FL420013.1|FL420013

EST:     GGGCGGCCGAATCCGTGCCGGAGACCTCCATACACGAATTCACCGTCAAG                         GATTGCAACGGCAAGGAAGTGAGCCTGGAAACCTACAAGGGGAAGGTCCTC
genomic: GGGCGGCCGAATCCGTGCCGGAGACCTCCATACACGAATTCACCGTCAAGgtgcggcgat ... cgtggagcagGATTGCAACGGCAAGGAAGTGAGCCTGGAAACCTACAAGGGGAAGGTCCTC

EST: gi|211496470|gb|FL394442.1|FL394442

EST:     GGGCGGCCGAATCCGTGCCGGAGACCTCCATACACGAATTCACCGTCAAG                         GATTGCAACGGCAAGGAAGTGAGCCTGGAAACCTACAAGGGGAAGGTCCTC
genomic: GGGCGGCCGAATCCGTGCCGGAGACCTCCATACACGAATTCACCGTCAAGgtgcggcgat ... cgtggagcagGATTGCAACGGCAAGGAAGTGAGCCTGGAAACCTACAAGGGGAAGGTCCTC

EST: gi|211401198|gb|FL425445.1|FL425445

EST:     GGGCGGCCGAATCCGTGCCGGAGACCTCCATACACGAATTCACCGTCAAG                         GATTGCAACGGCAAGGAAGTGAGCCTGGAAACCTACAAGGGGAAGGTCCTC
genomic: GGGCGGCCGAATCCGTGCCGGAGACCTCCATACACGAATTCACCGTCAAGgtgcggcgat ... cgtggagcagGATTGCAACGGCAAGGAAGTGAGCCTGGAAACCTACAAGGGGAAGGTCCTC

EST: gi|26558316|gb|CA830551.1|CA830551

EST:     GGGCGGCC-AATCCG-GCCGGAGACCTCCATACACGAATTCACCGTCAAG                         GATTGCAACGGCAAGGAAGTGAGCCTGGAAAACTAACAAGGGGAAGGTCCT
genomic: GGGCGGCCGAATCCGTGCCGGAGACCTCCATACACGAATTCACCGTCAAGgtgcggcgat ... cgtggagcagGATTGCAACGGCAAGGAAGTGAGCCTGGAAACCT-ACAAGGGGAAGGTCCT

EST: gi|13382326|gb|BG459001.1|BG459001

EST:     GGGCGGCCGAATCCGTGCCGGAGACCTCCATACACGAATTCACCGTCAAG                         GATTGCAACGGCAAGGAAGTGAGCCTGGAAACCTACAAGGGGAAGGTCCTC
genomic: GGGCGGCCGAATCCGTGCCGGAGACCTCCATACACGAATTCACCGTCAAGgtgcggcgat ... cgtggagcagGATTGCAACGGCAAGGAAGTGAGCCTGGAAACCTACAAGGGGAAGGTCCTC

EST: gi|47961660|gb|CN844369.1|CN844369

EST:     GGGCGGCCGAATCCGTGCCGGAGACCTCCATACACGAATTCACCGTCAAG                         GATTGCAACGGCAAGGAAGTGAGCCTGGAGACCTACAAGGGGAAGGTCCTC
genomic: GGGCGGCCGAATCCGTGCCGGAGACCTCCATACACGAATTCACCGTCAAGgtgcggcgat ... cgtggagcagGATTGCAACGGCAAGGAAGTGAGCCTGGAAACCTACAAGGGGAAGGTCCTC

EST: gi|32919699|gb|CF024511.1|CF024511

EST:     GGGCGGCCGAATCCGTGCCGGAGACCTCCATACACGAATTCACCGTCAAG                         GATTGCAACGGCAAGGAAGTGAGCCTGGAAACCTACAAGGGGAAGGTCGTC
genomic: GGGCGGCCGAATCCGTGCCGGAGACCTCCATACACGAATTCACCGTCAAGgtgcggcgat ... cgtggagcagGATTGCAACGGCAAGGAAGTGAGCCTGGAAACCTACAAGGGGAAGGTCCTC

EST: gi|211341878|gb|FL422746.1|FL422746

EST:     GGGCGGCCGAATCCGTGCCGGAGACCTCCATACACGAATTCACCGTCAAG                         GATTGCAACGGCAAGGAAGTGAGCCTGGAAACCTACAAGGGGAAGGTCCTC
genomic: GGGCGGCCGAATCCGTGCCGGAGACCTCCATACACGAATTCACCGTCAAGgtgcggcgat ... cgtggagcagGATTGCAACGGCAAGGAAGTGAGCCTGGAAACCTACAAGGGGAAGGTCCTC

EST: gi|211209105|gb|FL370007.1|FL370007

EST:     GGGCGGCCGAATCCGTGCCGGAGACCTCCATACACGAATTCACCGTCAAG                         GATTGCAACGGCAAGGAAGTGAGCCTGGAAACCTACAAGGGGAAGGTCCTC
genomic: GGGCGGCCGAATCCGTGCCGGAGACCTCCATACACGAATTCACCGTCAAGgtgcggcgat ... cgtggagcagGATTGCAACGGCAAGGAAGTGAGCCTGGAAACCTACAAGGGGAAGGTCCTC

EST: gi|61236533|gb|DN586283.1|DN586283

EST:     GGGCGGCCGAATCCGTGCCGGAGACCTCCATACACGAATTCACCGTCAAG                         GATTGCAACGGCAAGGAAGTGAGCCTGGAAACCTACAAGGGGAAGGTCCTC
genomic: GGGCGGCCGAATCCGTGCCGGAGACCTCCATACACGAATTCACCGTCAAGgtgcggcgat ... cgtggagcagGATTGCAACGGCAAGGAAGTGAGCCTGGAAACCTACAAGGGGAAGGTCCTC

EST: gi|211506468|gb|FL386341.1|FL386341

EST:     GGGCGGCCGAATCCGTGCCGGAGACCTCCATACACGAATTCACCGTCAAG                         GATTGCAACGGCAAGGAAGTGAGCCTGGAAACCTACAAGGGGAAGGTCCTC
genomic: GGGCGGCCGAATCCGTGCCGGAGACCTCCATACACGAATTCACCGTCAAGgtgcggcgat ... cgtggagcagGATTGCAACGGCAAGGAAGTGAGCCTGGAAACCTACAAGGGGAAGGTCCTC

EST: gi|211455876|gb|FL373123.1|FL373123

EST:     GGGCGGCCGAATCCGTGCCGGAGACCTCCATACACGAATTCACCGTCAAG                         GATTGCAACGGCAAGGAAGTGAGCCTGGAAACCTACAAGGGGAAGGTCCTC
genomic: GGGCGGCCGAATCCGTGCCGGAGACCTCCATACACGAATTCACCGTCAAGgtgcggcgat ... cgtggagcagGATTGCAACGGCAAGGAAGTGAGCCTGGAAACCTACAAGGGGAAGGTCCTC

EST: gi|211266758|gb|FL409742.1|FL409742

EST:     GGGCGGCCGAATCCGTGCCGGAGACCTCCATACACGAATTCACCGTCAAG                         GATTGCAACGGCAAGGAAGTGAGCCTGGAAACCTACAAGGGGAAGGTCCTC
genomic: GGGCGGCCGAATCCGTGCCGGAGACCTCCATACACGAATTCACCGTCAAGgtgcggcgat ... cgtggagcagGATTGCAACGGCAAGGAAGTGAGCCTGGAAACCTACAAGGGGAAGGTCCTC

EST: gi|211221434|gb|FL386101.1|FL386101

EST:     GGGCGGCCGAATCCGTGCCGGAGACCTCCATACACGAATTCACCGTCAAG                         GATTGCAACGGCAAGGAAGTGAGCCTGGAAACCTACAAGGGGAAGGTCCTC
genomic: GGGCGGCCGAATCCGTGCCGGAGACCTCCATACACGAATTCACCGTCAAGgtgcggcgat ... cgtggagcagGATTGCAACGGCAAGGAAGTGAGCCTGGAAACCTACAAGGGGAAGGTCCTC

EST: gi|211081760|gb|FL378025.1|FL378025

EST:     GGGCGGCCGAATCCGTGCCGGATACCTCCATACACGAATTCACCGTCAAG                         GATTGCAACGGCAAGGAAGTGAGCCTGGAAACCTACAAGGGGAAGGTCCTC
genomic: GGGCGGCCGAATCCGTGCCGGAGACCTCCATACACGAATTCACCGTCAAGgtgcggcgat ... cgtggagcagGATTGCAACGGCAAGGAAGTGAGCCTGGAAACCTACAAGGGGAAGGTCCTC

EST: gi|211136736|gb|FL400349.1|FL400349

EST:     GGGCGGCCGAATCCGTGCCGGAGACCTCCATACACGAATTCACCGTCAAG                         GATTGCAACGGCAAGGAAGTGAGCCTGGAAACCTACAAGGGGAAGGTCCTC
genomic: GGGCGGCCGAATCCGTGCCGGAGACCTCCATACACGAATTCACCGTCAAGgtgcggcgat ... cgtggagcagGATTGCAACGGCAAGGAAGTGAGCCTGGAAACCTACAAGGGGAAGGTCCTC

EST: gi|211003170|gb|FL398082.1|FL398082

EST:     GGGCGGCCGAATCCGTGCCGGAGACCTCCATACACGAATTCACCGTCAAG                         GATTGCAACGGCAAGGAAGTGAGCCTGGAAACCTACAAGGGGAAGGTCCTC
genomic: GGGCGGCCGAATCCGTGCCGGAGACCTCCATACACGAATTCACCGTCAAGgtgcggcgat ... cgtggagcagGATTGCAACGGCAAGGAAGTGAGCCTGGAAACCTACAAGGGGAAGGTCCTC

EST: gi|211429343|gb|FL418455.1|FL418455

EST:     GGGCGGCCGAATCCGTGCCGGAGACCTCCATACACGAATTCACCGTCAAG                         GATTGCAACGGCAAGGAAGTGAGCCTGGAAACCTACAAGGGGAAGGTCCTC
genomic: GGGCGGCCGAATCCGTGCCGGAGACCTCCATACACGAATTCACCGTCAAGgtgcggcgat ... cgtggagcagGATTGCAACGGCAAGGAAGTGAGCCTGGAAACCTACAAGGGGAAGGTCCTC

EST: gi|211093343|gb|FL430023.1|FL430023

EST:     GGGSGGCCGAATCCGTGCCGGAGACCTCCATACACGAATTCACCGTCAAG                         GATTGCAACGGCAAGGAAGTGAGCCTGGAAACCTACAAGGGGAAGGTCCTC
genomic: GGGCGGCCGAATCCGTGCCGGAGACCTCCATACACGAATTCACCGTCAAGgtgcggcgat ... cgtggagcagGATTGCAACGGCAAGGAAGTGAGCCTGGAAACCTACAAGGGGAAGGTCCTC

EST: gi|211158277|gb|FL406080.1|FL406080

EST:     GGGCGGCCGAATCCGTGCCGGAGACCTCCATACACGAATTCACCGTCAAG                         GATTGCAACGGCAAGGAAGTGAGCCTGGAAACCTACAAGGGGAAGGTCCTC
genomic: GGGCGGCCGAATCCGTGCCGGAGACCTCCATACACGAATTCACCGTCAAGgtgcggcgat ... cgtggagcagGATTGCAACGGCAAGGAAGTGAGCCTGGAAACCTACAAGGGGAAGGTCCTC

EST: gi|211057368|gb|FL403435.1|FL403435

EST:     GGGCGGCCGAATCCGTGCCGGAGACCTCCATACACGAATTCACCGTCAAG                         GATTGCAACGGCMAGGAAGTGAGCCTGGAAACCTACAAGGGGAAGGTCCTC
genomic: GGGCGGCCGAATCCGTGCCGGAGACCTCCATACACGAATTCACCGTCAAGgtgcggcgat ... cgtggagcagGATTGCAACGGCAAGGAAGTGAGCCTGGAAACCTACAAGGGGAAGGTCCTC

EST: gi|211325357|gb|FL370094.1|FL370094

EST:     GGGCGGCCGAATCCGTGCCGGAGACCTCCATACACGAATTCACCGTCAAG                         GATTGCAACGGCAAGGAAGTGAGCCTGGAAACCTACAAGGGGAAGGTCCTC
genomic: GGGCGGCCGAATCCGTGCCGGAGACCTCCATACACGAATTCACCGTCAAGgtgcggcgat ... cgtggagcagGATTGCAACGGCAAGGAAGTGAGCCTGGAAACCTACAAGGGGAAGGTCCTC

EST: gi|211045305|gb|FL393094.1|FL393094

EST:     GGGCGGCCGAATCCGTGCCGGAGACCTCCATACACGAATTCACCGTCAAG                         GATTGCAACGGCAAGGAAGTGAGCCTGGAAACCTACAAGGGGAAGGTCCTC
genomic: GGGCGGCCGAATCCGTGCCGGAGACCTCCATACACGAATTCACCGTCAAGgtgcggcgat ... cgtggagcagGATTGCAACGGCAAGGAAGTGAGCCTGGAAACCTACAAGGGGAAGGTCCTC

EST: gi|211436512|gb|FL387571.1|FL387571

EST:     GGGCGGCCGAATCCGTGCCGGAGACCTCCATACACGAATTCACCGTCAAG                         GATTGCAACGGCAAGGAAGTGAGCCTGGAAACCTACAAGGGGAAGGTCCTC
genomic: GGGCGGCCGAATCCGTGCCGGAGACCTCCATACACGAATTCACCGTCAAGgtgcggcgat ... cgtggagcagGATTGCAACGGCAAGGAAGTGAGCCTGGAAACCTACAAGGGGAAGGTCCTC

EST: gi|9953563|gb|BE640146.1|BE640146

EST:     GGGCGGCCGAATCCGTGCCGGAGACCTCCATACACGAATTCACCGTCAAG                         GATTGCAACGGCAAGGAAGTGAGCCTGGAAACCTACAAGGGGAAGGTCCTC
genomic: GGGCGGCCGAATCCGTGCCGGAGACCTCCATACACGAATTCACCGTCAAGgtgcggcgat ... cgtggagcagGATTGCAACGGCAAGGAAGTGAGCCTGGAAACCTACAAGGGGAAGGTCCTC

EST: gi|211516379|gb|FL408121.1|FL408121

EST:     GGGCGGCCGAATCCGTGCCGGAGACCTCCATACACGAATTCACCGTCAAG                         GATTGCAACGGCAAGGAAGTGAGCCTGGAAACCTACAAGGGGAAGGTCCTC
genomic: GGGCGGCCGAATCCGTGCCGGAGACCTCCATACACGAATTCACCGTCAAGgtgcggcgat ... cgtggagcagGATTGCAACGGCAAGGAAGTGAGCCTGGAAACCTACAAGGGGAAGGTCCTC

EST: gi|211107550|gb|FL406867.1|FL406867

EST:     GGGCGGCCGAATCCGTGCCGGAGACCTCCATACACGAATTCACCGTCAAG                         GATTGCAACGGCAAGGAAGTGAGCCTGGAAACCTACAAGGGGAAGGTCCTC
genomic: GGGCGGCCGAATCCGTGCCGGAGACCTCCATACACGAATTCACCGTCAAGgtgcggcgat ... cgtggagcagGATTGCAACGGCAAGGAAGTGAGCCTGGAAACCTACAAGGGGAAGGTCCTC

EST: gi|211466205|gb|FL385417.1|FL385417

EST:     GGGCGG-CGAATCCGTGCCGGAGACCTCCATACACGAATTCACCGTCAAG                         GATTGCAACGGCAAGGAAGTGAGCCTGGAAACCTACAAGGGGAAGGTCCTC
genomic: GGGCGGCCGAATCCGTGCCGGAGACCTCCATACACGAATTCACCGTCAAGgtgcggcgat ... cgtggagcagGATTGCAACGGCAAGGAAGTGAGCCTGGAAACCTACAAGGGGAAGGTCCTC

EST: gi|211408331|gb|FL399287.1|FL399287

EST:     GGGCGGCCGAATCCGTGCCGGAGACCTCCATACACGAATTCACCGTCAAG                         GATTGCAACGGCAAGGAAGTGAGCCTGGAAACCTACAAGGGGAAGGTCCTC
genomic: GGGCGGCCGAATCCGTGCCGGAGACCTCCATACACGAATTCACCGTCAAGgtgcggcgat ... cgtggagcagGATTGCAACGGCAAGGAAGTGAGCCTGGAAACCTACAAGGGGAAGGTCCTC

EST: gi|211439776|gb|FL418972.1|FL418972

EST:     GGGCGGCCGAATCCGTGCCGGAGACCT-CATACACGAATTCACCGTCAAG                         GATTGCAACGGCAAGGAAGTGAGCCTGGAAACCTACAAGGGGAAGGTCCTC
genomic: GGGCGGCCGAATCCGTGCCGGAGACCTCCATACACGAATTCACCGTCAAGgtgcggcgat ... cgtggagcagGATTGCAACGGCAAGGAAGTGAGCCTGGAAACCTACAAGGGGAAGGTCCTC

EST: gi|211317842|gb|FL424596.1|FL424596

EST:     GGGCGGCCGAATCCGTGCCGGAGACCTCCATACACGAATTCACCGTCAAG                         GATTGCAACGGCAAGGAAGTGAGCCTGGAAACCTACAAGGGGAAGGTCCTC
genomic: GGGCGGCCGAATCCGTGCCGGAGACCTCCATACACGAATTCACCGTCAAGgtgcggcgat ... cgtggagcagGATTGCAACGGCAAGGAAGTGAGCCTGGAAACCTACAAGGGGAAGGTCCTC

EST: gi|211146309|gb|FL420905.1|FL420905

EST:     GGGCGGCCGAATCCGTGCCGGAGACCTCCATACACGAATTCACCGTCAAG                         GATTGCAACGGCAAGGAAGTGAGCCTGGAAACCTACAAGGGGAAGGTCGTC
genomic: GGGCGGCCGAATCCGTGCCGGAGACCTCCATACACGAATTCACCGTCAAGgtgcggcgat ... cgtggagcagGATTGCAACGGCAAGGAAGTGAGCCTGGAAACCTACAAGGGGAAGGTCCTC

EST: gi|211026994|gb|FL377496.1|FL377496

EST:     GGGCGGCCGAATCCGTGCCGGAGACCTCCATACACGAATTCACCGTCAAG                         GATTGCAACGGCAAGGAAGTGAGCCTGGAAACCTACAAGGGGAAGGTCCTC
genomic: GGGCGGCCGAATCCGTGCCGGAGACCTCCATACACGAATTCACCGTCAAGgtgcggcgat ... cgtggagcagGATTGCAACGGCAAGGAAGTGAGCCTGGAAACCTACAAGGGGAAGGTCCTC

EST: gi|211227878|gb|FL402241.1|FL402241

EST:     GGGCGGCCGAATCCGTGCCGGAGACCTCCATACACGAATTCACCGTCAAG                         GATTGCAACGGCAAGGAAGTGAGCCTGGAAACCTACAAGGGGAAGGTCCTC
genomic: GGGCGGCCGAATCCGTGCCGGAGACCTCCATACACGAATTCACCGTCAAGgtgcggcgat ... cgtggagcagGATTGCAACGGCAAGGAAGTGAGCCTGGAAACCTACAAGGGGAAGGTCCTC

RNA-Seq data

ATGC Supported by RNA-Seq exonic block that spans over the splice site

atgs Truncated intron sequence

Each block is as long as the maximal overhang of any read spanning the junction.
The score is the number of alignments spanning the junction.

Found data for 4 RNA-Seq libraries.

Block sizes: 49 (upstream exon), 49 (downstream exon)
Score: 223

GCCCCGTTCGGGTAGGGAAGGGAAGGAGAGGCGAAGCGGAGGCGAGATGGGGGCGGCCGAATCCGTGCCGGAGACCTCCATACACGAATTCACCGTCAAGgtgcggcgat ... cgtggagcagGATTGCAACGGCAAGGAAGTGAGCCTGGAAACCTACAAGGGGAAGGTCCTCCTTGTTGTTAACGTCGCCTCCAAATG

Block sizes: 49 (upstream exon), 49 (downstream exon)
Score: 256

Block sizes: 49 (upstream exon), 49 (downstream exon)
Score: 255

Block sizes: 49 (upstream exon), 49 (downstream exon)
Score: 287

atgc intronic sequence ATGC exonic sequence

Intronic sequence truncated to 55 bases.

ctttttctgattttttttcgcaaaaagataattttggggtttattcgtggagcagGATTGCAACGGCAAGGAAGTGAGCCTGGAAACCTACAAGGGGAAGGTCCTCCTTGTTGTTAACGTCGCCTCCAAATG