Skip to another splice site:
1  
 5'  3'   		2  
 5'  3'   		3  
 5'  3'   		4  
 5'  3'   		5  
 5'  3'   		6  
 5'  3'   

Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtacgtacgtacttgtgctgctattccatatggaacatttcctctgttttatgagctaaatctcgtcatgcatgttattgcaaccgacagAATAGGTACTATGATCTGATCATCTCCACGAGGCTGGCGGGGATCGGGCACGCGCTCTTCCTTTTCATGTCGTCGGCGCGCGACAAGGTCGGCTACGTTT

Basic information

species Zea mays
transcript GRMZM2G328908_T01
intron # 1
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GRMZM2G328908_T02 (Zea mays), 3'ss of exon 1
lower sequence: LOC_Os08g17390.1 (Oryza sativa), 3'ss of exon 1
-------gtacgtacgtacttgtgct-gctattccatatggaacatttcctctgtttta---tgagctaaatctcgtcatgcatgttattgcaaccgacagAATAGGTACTATGATCTGATCATCTCCACGAGGCTGGCGGGGATCGGGCACGCGCTCTTCCTTTTCATGTCGTCGGCGCGCGACAAGGTCGGCTACGTTT
        | |  ||  || | ||||   ||||     | ||  || |      |   |   | | | || |   |       |  | |||     | ||||| |||||||||||||||||||| || || | | |||| ||||| ||||||||||||||||| |||||||||||||| ||||||||||||||||| ||||
atgttgcttccccac-cacatatgctcagtattttgattagattatatttatcatgaaagattcaaccaactgaagcttgattttgtgttgaggttggcagAACAGGTACTATGATCTGATCATATCGACCAAGTTGGCCGGGATAGGGCACGCGCTCTTCCTCTTCATGTCGTCGGCCCGCGACAAGGTCGGCTATGTTT
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|148991813|gb|EE033399.2|EE033399
EST:     ACGACTGGCCGGAGCCCGCCGAATACACGCACATGCTCGGCGTCCTAAAG                         AATAGGTACTATGATCTGATCATCTCCACGAGGCTGGCGGGGATCGGGCAC
genomic: ACGACTGGCCGGAGCCCGCCGAATACACGCACATGCTCGGCGTCCTAAAGgtacgtacgt ... caaccgacagAATAGGTACTATGATCTGATCATCTCCACGAGGCTGGCGGGGATCGGGCAC
EST: gi|211358043|gb|FL050070.1|FL050070
EST:     ACGACTGGCCGGAGCCCGCCGAATA-ACGCACATGCTCGGCGTCCTAAAG                         AATAGGTACTATGATCTGATCATCCTC-ACGAGGCTGGCGGGGATCGG-CA
genomic: ACGACTGGCCGGAGCCCGCCGAATACACGCACATGCTCGGCGTCCTAAAGgtacgtacgt ... caaccgacagAATAGGTACTATGATCTGATCATC-TCCACGAGGCTGGCGGGGATCGGGCA
EST: gi|148947609|gb|EC893089.2|EC893089
EST:     ACGACTGGCCGGAGCCCGCCGAATACACGCACATGCTCGGCGTCCTAAAG                         AATAGGTACTATGATCTGATCATCTCCACGAGGCTGGCGGGGATCGGGCAC
genomic: ACGACTGGCCGGAGCCCGCCGAATACACGCACATGCTCGGCGTCCTAAAGgtacgtacgt ... caaccgacagAATAGGTACTATGATCTGATCATCTCCACGAGGCTGGCGGGGATCGGGCAC
EST: gi|148928663|gb|EC873223.2|EC873223
EST:     ACGACTGGCCGGAGCCCGCCGAATACACGCACATGCTCGGCGTCCTAAAG                         AATAGGTACTATGATCTGATCATCTCCACGAGGCTGGCGGGGATCGGGCAC
genomic: ACGACTGGCCGGAGCCCGCCGAATACACGCACATGCTCGGCGTCCTAAAGgtacgtacgt ... caaccgacagAATAGGTACTATGATCTGATCATCTCCACGAGGCTGGCGGGGATCGGGCAC
EST: gi|148941964|gb|EC886951.2|EC886951
EST:     ACGACTGGCCGGAGCCCGCCGAATACACGCACATGCTCGGCGTCCTAAAG                         AATAGGTACTATGATCTGATCATCTCCACGAGGCTGGCGGGGATCGGGCAC
genomic: ACGACTGGCCGGAGCCCGCCGAATACACGCACATGCTCGGCGTCCTAAAGgtacgtacgt ... caaccgacagAATAGGTACTATGATCTGATCATCTCCACGAGGCTGGCGGGGATCGGGCAC
EST: gi|13198763|gb|BG354565.1|BG354565
EST:     ACGACTGGCCGGAGCCCGCCGAATACACGCACATGCTCGGCGTCCTAAAG                         AATAGGTACTATGATCTGATCATCTCCACGAGGCTGGCGGGGATCGGGCAC
genomic: ACGACTGGCCGGAGCCCGCCGAATACACGCACATGCTCGGCGTCCTAAAGgtacgtacgt ... caaccgacagAATAGGTACTATGATCTGATCATCTCCACGAGGCTGGCGGGGATCGGGCAC
EST: gi|148956152|gb|EC901927.2|EC901927
EST:     ACGACTGGCCGGAGCCCGCCGAATACACGCACATGCTCGGCGTCCTAAAG                         AATAGGTACTATGATCTGATCATCTCCCCGAGGCTGGCGGGGATCGGGCAC
genomic: ACGACTGGCCGGAGCCCGCCGAATACACGCACATGCTCGGCGTCCTAAAGgtacgtacgt ... caaccgacagAATAGGTACTATGATCTGATCATCTCCACGAGGCTGGCGGGGATCGGGCAC
EST: gi|13490371|gb|BG517135.1|BG517135
EST:     ACGACTGGCCGGAGCCCGCCGAATACACGCACATGCTCGGCGTCCTAAAG                         AATAGGTACTATGATCTGATCATCTCCACGAGGCTGGCGGGGATCGGGCAC
genomic: ACGACTGGCCGGAGCCCGCCGAATACACGCACATGCTCGGCGTCCTAAAGgtacgtacgt ... caaccgacagAATAGGTACTATGATCTGATCATCTCCACGAGGCTGGCGGGGATCGGGCAC
EST: gi|148957850|gb|EC904001.2|EC904001
EST:     ACGACTGGCCGGAGCCCGCCGAATACACGCACATGCTCGGCGTCCTAAAG                         AATAGGTACTATGATCTGATCATCTCCACGAGGCTGGCGGGGATCGGGCAC
genomic: ACGACTGGCCGGAGCCCGCCGAATACACGCACATGCTCGGCGTCCTAAAGgtacgtacgt ... caaccgacagAATAGGTACTATGATCTGATCATCTCCACGAGGCTGGCGGGGATCGGGCAC
EST: gi|149081398|gb|EE170514.2|EE170514
EST:     ACGACTGGCCGGAGCCCGCCGAATACACGCACATGCTCGGCGTCCTAAAG                         AATAGGTACTATGATCTGATCATCTCCACGAGGCTGGCGGGGATCGGGCAC
genomic: ACGACTGGCCGGAGCCCGCCGAATACACGCACATGCTCGGCGTCCTAAAGgtacgtacgt ... caaccgacagAATAGGTACTATGATCTGATCATCTCCACGAGGCTGGCGGGGATCGGGCAC
EST: gi|149097400|gb|EE183253.2|EE183253
EST:     ACGACTGGCCGGAGCCCGCCGAATACACGCACATGCTCGGCGTCCTAAAG                         AATAGGTACTATGATCTGATCATCTCCACGAGGCTGGCGGGGATCGGGCAC
genomic: ACGACTGGCCGGAGCCCGCCGAATACACGCACATGCTCGGCGTCCTAAAGgtacgtacgt ... caaccgacagAATAGGTACTATGATCTGATCATCTCCACGAGGCTGGCGGGGATCGGGCAC
EST: gi|148996081|gb|EE035340.2|EE035340
EST:     ACGACTGGCCGGAGCCCGCCGAATACACGCACATGCTCGGCGTCCTAAAG                         AATAGGTACTATGATCTGATCATCTCCACGAGGCTGGCGGGGATCGGGCAC
genomic: ACGACTGGCCGGAGCCCGCCGAATACACGCACATGCTCGGCGTCCTAAAGgtacgtacgt ... caaccgacagAATAGGTACTATGATCTGATCATCTCCACGAGGCTGGCGGGGATCGGGCAC
EST: gi|116815101|gb|EC857735.1|EC857735
EST:     ACGACTGGCCGGAGCCCGCCGAATACACGCACATGCTCGGCGTCCTAAAG                         AATAGGTACTATGATCTGATCATCTCCACGAGGCTGGCGGGGATCGGGCAC
genomic: ACGACTGGCCGGAGCCCGCCGAATACACGCACATGCTCGGCGTCCTAAAGgtacgtacgt ... caaccgacagAATAGGTACTATGATCTGATCATCTCCACGAGGCTGGCGGGGATCGGGCAC
EST: gi|6827348|gb|AW330991.1|AW330991
EST:     ACGACTGGCCGGAGCCCGCCGAATACACGCACATGCTCGGCGTCCTAAAG                         AATAGGTACTATGATCTGATCATCTCCACGAGGCTGGCGGGGATCGGGCAC
genomic: ACGACTGGCCGGAGCCCGCCGAATACACGCACATGCTCGGCGTCCTAAAGgtacgtacgt ... caaccgacagAATAGGTACTATGATCTGATCATCTCCACGAGGCTGGCGGGGATCGGGCAC
EST: gi|148955410|gb|EC900982.2|EC900982
EST:     ACGACTGGCCGGAGCCCGCCGAATACACGCACATGCTCGGCGTCCTAAAG                         AATAGGTACTATGATCTGATCATCTCCACGAGGCTGGCGGGGATCGGGCAC
genomic: ACGACTGGCCGGAGCCCGCCGAATACACGCACATGCTCGGCGTCCTAAAGgtacgtacgt ... caaccgacagAATAGGTACTATGATCTGATCATCTCCACGAGGCTGGCGGGGATCGGGCAC
EST: gi|148934031|gb|EC878039.2|EC878039
EST:     ACGACTGGCCGGAGCCCGCCGAATACACGCACATGCTCGGCGTCCTAAAG                         AATAGGTACTATGATCTGATCATCTCCACGAGGCTGGCGGGGATCGGGCAC
genomic: ACGACTGGCCGGAGCCCGCCGAATACACGCACATGCTCGGCGTCCTAAAGgtacgtacgt ... caaccgacagAATAGGTACTATGATCTGATCATCTCCACGAGGCTGGCGGGGATCGGGCAC
EST: gi|149040129|gb|EE046780.2|EE046780
EST:     ACGACTGGCCGGAGCCCGCCGAATACACGCACATGCTCGGCGTCCTAAAG                         AATAGGTACTATGATCTGATCATCTCCACGAGGCTGGCGGGGATCGGGCAC
genomic: ACGACTGGCCGGAGCCCGCCGAATACACGCACATGCTCGGCGTCCTAAAGgtacgtacgt ... caaccgacagAATAGGTACTATGATCTGATCATCTCCACGAGGCTGGCGGGGATCGGGCAC


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

catttcctctgttttatgagctaaatctcgtcatgcatgttattgcaaccgacagAATAGGTACTATGATCTGATCATCTCCACGAGGCTGGCGGGGATCGGGCACGCGCTCTTCCTTTTCATGTCGTCGGCGCGCGACAAGGTCGGCTACGTTT
                  agctaaa  putative branch site (score: 3)
         tgttttat  TA-rich tract