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...cgtagtttggtctcagatcttgggctgggattttttttatttggaaaatgttttttttttgctaaattcatgtcgtgacgccgatgccacaacattgcagGACCATGGCAAGTGTCCCGCCACCAAGGAGGACCTCACCATGGATGATATCGTGCCGGTCAAGACCAACACG
species | Zea mays |
transcript | GRMZM2G324540_T02 |
intron # | 1 |
splice site | 3' |
intron type | U2 |
EST: CTCTCTCCCGCGCCCGACCTTGGCCCTCCCCTCCTCCATGATCTGCGCGA GACCATGGCAAGTGTCCCGCCACCAAGGAGGACCTCACCATGGATGATATCEST: gi|211137347|gb|FL244354.1|FL244354
genomic: CTCTCTCCCGCGCCCGACCTTGGCCCTCCCCTCCTCCATGATCTGCGCGAgtaatgcctc ... aacattgcagGACCATGGCAAGTGTCCCGCCACCAAGGAGGACCTCACCATGGATGATATC
EST: CTCTCTCCCGCGCCCGACCTTGGCCCTCCCCTCCTCCATGATCTGCGCGA GACCATGGCAAGTGTCCCGCCACCAAGGAGGACCTCACCATGGATGATATCEST: gi|211137349|gb|FL244356.1|FL244356
genomic: CTCTCTCCCGCGCCCGACCTTGGCCCTCCCCTCCTCCATGATCTGCGCGAgtaatgcctc ... aacattgcagGACCATGGCAAGTGTCCCGCCACCAAGGAGGACCTCACCATGGATGATATC
EST: CTCTCTCCCGCGCCCGACCTTGGCCCTCCCCTCCTCCATGATCTGCGCGA GACCATGGCAAGTGTCCCGCCACCAAGGAGGACCTCACCATGGATGATATCEST: gi|211137353|gb|FL244360.1|FL244360
genomic: CTCTCTCCCGCGCCCGACCTTGGCCCTCCCCTCCTCCATGATCTGCGCGAgtaatgcctc ... aacattgcagGACCATGGCAAGTGTCCCGCCACCAAGGAGGACCTCACCATGGATGATATC
EST: CTCTCTCCCGCGCCCGACCTTGGCCCTCCCCTCCTCCATGATCTGCGCGA GACCATGGCAAGTGTCCCGCCACCAAGGAGGACCTCACCATGGATGATATCEST: gi|211137348|gb|FL244355.1|FL244355
genomic: CTCTCTCCCGCGCCCGACCTTGGCCCTCCCCTCCTCCATGATCTGCGCGAgtaatgcctc ... aacattgcagGACCATGGCAAGTGTCCCGCCACCAAGGAGGACCTCACCATGGATGATATC
EST: CTCTCTCCCGCGCCCGACCTTGGCCCTCCCCTCCTCCATGATCTGCGCGA GACCATGGCAAGTGTCCCGCCACCAAGGAGGACCTCACCATGGATGATATC
genomic: CTCTCTCCCGCGCCCGACCTTGGCCCTCCCCTCCTCCATGATCTGCGCGAgtaatgcctc ... aacattgcagGACCATGGCAAGTGTCCCGCCACCAAGGAGGACCTCACCATGGATGATATC
aaatgttttttttttgctaaattcatgtcgtgacgccgatgccacaacattgcagGACCATGGCAAGTGTCCCGCCACCAAGGAGGACCTCACCATGGATGATATCGTGCCGGTCAAGACCAACACG
tgctaaa putative branch site (score: 1)
ttttttttttgctaaa TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| cgtagtttggtctcagatcttgggctgggattttttttatttggaaaatgttttttttttgctaaattcatgtcgtgacgccgatgccacaacattgcagGACCATGGCAAGTGTCCCGCCACCAAGGAGGACCTCACCATGGATGATATCGTGCCGGTCAAGACCAACACG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGGAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAGGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CATGGA
- - - - - - - - - - tgggctg
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -attcatg
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -gccgatg