1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' |
...tgtgtaaagtgggctgaccttttgatgtcattgacaagagtgaatgcacatgccatgttttattgcttctgatttatgctcattacttccatatctacagATCATCAACTAGAAAAGAATCGGTCCGATTGGATACTGAGCCATCTGTACCCTATCAACAAGTTCCAGATGCTGGTTCTGGCAGGCACTCTGATGACGAG
species | Zea mays |
transcript | GRMZM2G316635_T03 |
intron # | 1 |
splice site | 3' |
intron type | U2 |
EST: GGTGCAGAGTCTCTGGTGGAGGAGATCGCGTCACCAAGCGGGAGCTCAAG ATCATCAACTAGAAAAGAATCGGTCCGATTGGATGCTGAGCCATATATACCEST: gi|32935201|gb|CF040013.1|CF040013
genomic: GGTGCAGAGTCTCTGGTGGAGGAGATCGCGTCACCAAGTGGGAGCTCAAGgtacgaactc ... atatctacagATCATCAACTAGAAAAGAATCGGTCCGATTGGATACTGAGCCATCTGTACC
EST: GGTGCAGAGTCTCTGGTGGAGGAGATCGCGTCACCAAGCGGGAGCTCAAG ATCATCAACTAGAAAAGAATCGGTCCGATTGGATGCTGAGCCATATATACCEST: gi|32937955|gb|CF042774.1|CF042774
genomic: GGTGCAGAGTCTCTGGTGGAGGAGATCGCGTCACCAAGTGGGAGCTCAAGgtacgaactc ... atatctacagATCATCAACTAGAAAAGAATCGGTCCGATTGGATACTGAGCCATCTGTACC
EST: GGTGCAGAGTCTCTGGTGGAGGAGATCGCGTCACCAAGCGGGAGCTCAAG ATCATCAACTAGAAAAGAATCGGTCCGATTGGATGCTGAGCCATATATACC
genomic: GGTGCAGAGTCTCTGGTGGAGGAGATCGCGTCACCAAGTGGGAGCTCAAGgtacgaactc ... atatctacagATCATCAACTAGAAAAGAATCGGTCCGATTGGATACTGAGCCATCTGTACC
gcacatgccatgttttattgcttctgatttatgctcattacttccatatctacagATCATCAACTAGAAAAGAATCGGTCCGATTGGATACTGAGCCATCTGTACCCTATCAACAAGTTCCAGATGCTGGTTCTGGCAGGCACTCTGATGACGAG
ttctgat putative branch site (score: 3)
cttccat putative PPT
atgttttatt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| tgtgtaaagtgggctgaccttttgatgtcattgacaagagtgaatgcacatgccatgttttattgcttctgatttatgctcattacttccatatctacagATCATCAACTAGAAAAGAATCGGTCCGATTGGATACTGAGCCATCTGTACCCTATCAACAAGTTCCAGATGCTGGTTCTGGCAGGCACTCTGATGACGAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CAGATG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - ATGCTG
- - - - -tgggctg
- - - - - - - - - - tttgatg
- - - - - - - - - - - - - - - - - - - - tgaatgc
- - - - - - - - - - - - - - - - - - - - - - - -acatgcc
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - tatgctc